Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02998 and BL01180

See Amino acid alignment / Visit BSNT_02998 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:42
# Commandline: needle
#    -asequence dna-align/BSNT_02998___alsT.1.5803.seq
#    -bsequence dna-align/BL01180___alsT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02998___alsT-BL01180___alsT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02998___alsT-BL01180___alsT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02998___alsT
# 2: BL01180___alsT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1469
# Identity:    1019/1469 (69.4%)
# Similarity:  1019/1469 (69.4%)
# Gaps:         127/1469 ( 8.6%)
# Score: 3397.5
# 
#
#=======================================

BSNT_02998___      1 ATGGAGTCTTTTTT---CAATAGTTTGATTAATATTCCAAGTGATTTCAT     47
                     |||||.....||||   |.|.|   |.||.|||.|.||.||.|.|||.||
BL01180___als      1 ATGGAAGAAATTTTAAGCGAAA---TCATCAATGTCCCGAGCGGTTTTAT     47

BSNT_02998___     48 CTGGAAATACCTATTT----TATATTTTAATAGGGCTTGGATTATTTTTT     93
                     .|||    ||.|||||    |||||.||||||||..|.||..|.||.|| 
BL01180___als     48 TTGG----ACTTATTTAGTCTATATATTAATAGGAATAGGCCTGTTCTT-     92

BSNT_02998___     94 ACCATACGTT----------TTGGTTTTATCCAATTCCGTTATTTTATTG    133
                         ||||||          ||.|||     ||||||||.|||||..|.|
BL01180___als     93 ----TACGTTTAAATTGAAATTCGTT-----CAATTCCGCTATTTCTTCG    133

BSNT_02998___    134 AAATGTTCAGAATAGT---------AGGGGAGAAGCCGGAAGGAAATAAA    174
                     |.|||||..|.||.||         ||.|||||      |||||   |||
BL01180___als    134 AGATGTTTCGTATCGTCGGACAAAAAGAGGAGA------AAGGA---AAA    174

BSNT_02998___    175 GGTGTTTCATCTATGCAGGCATTCTTTATTTCGGCCGCATCCCGAGTCGG    224
                     ||.||.||.|||.|||||||||||||||||||.|||||.|||||.|||||
BL01180___als    175 GGCGTCTCGTCTTTGCAGGCATTCTTTATTTCCGCCGCTTCCCGTGTCGG    224

BSNT_02998___    225 CACAGGGAATTTGACTGGTGTAGC-CTTAGCAATTGCGACAGGCGGACCA    273
                     .||.||.||..||||.|||||.|| ||| ||..||||.|||||||||||.
BL01180___als    225 AACGGGTAACCTGACCGGTGTGGCGCTT-GCTGTTGCAACAGGCGGACCG    273

BSNT_02998___    274 GGCGCTGTATTTTGGATGTGGGTAGTAGCTGC-AGTAGGCATGGCTTCAA    322
                     ||.||.||.||||||||||||||.||.|| || .||.||.||||||||||
BL01180___als    274 GGAGCGGTCTTTTGGATGTGGGTCGTCGC-GCTTGTCGGAATGGCTTCAA    322

BSNT_02998___    323 GCTTTGTTGAGAGTACGTTAGCGCAGCTTTATAAGGTGAGAGACGGGGAG    372
                     |||||||.||.||||||.|.||.||..|.||.|||||.|.||||||.||.
BL01180___als    323 GCTTTGTGGAAAGTACGCTGGCTCAAGTCTACAAGGTCAAAGACGGCGAT    372

BSNT_02998___    373 GATTTCCGCGGAGGCCCGGCTTACTATATTCAAAAGGGTCTTGGTGCCAG    422
                     .|||||.|.||||||||.|||||.||.||..||||.|..||.||.|||||
BL01180___als    373 CATTTCAGAGGAGGCCCTGCTTATTACATGGAAAAAGCGCTGGGCGCCAG    422

BSNT_02998___    423 ATGGCTTGGCATCGTTTTTGCAATCTTAATTACTGTCTCATTCGGCTTGA    472
                     ||||.|.||.||..|.|||||..|.||||||||..|..||||||||||||
BL01180___als    423 ATGGATGGGGATTATCTTTGCCGTTTTAATTACAATTACATTCGGCTTGA    472

BSNT_02998___    473 TTTTTAACGCTGTTCAAACAAATACAATTGCTGGAGCATTGGAT----GG    518
                     |||||||.||.||||||.|.||.||.||.|..||    ||.|||    ||
BL01180___als    473 TTTTTAATGCGGTTCAAGCCAACACGATCGTCGG----TTCGATGCAAGG    518

BSNT_02998___    519 CGCATTCCATGTGAATAAAATAGTTGTAGCCATAGTTCTGGCGGTTTTAA    568
                     .||.|||.|..||.||||||.|||.||||.|||..|.||.||.|...|.|
BL01180___als    519 GGCTTTCAACCTGGATAAAACAGTGGTAGGCATCATCCTTGCTGCAATCA    568

BSNT_02998___    569 CTGCGTTTATCATTTTCGGCGGTTTAAAACGTGTTGTCGCTGTTTCACAG    618
                     |.|..|||||||||||||||||.||.|||||.|||||..|.|||||.|||
BL01180___als    569 CCGGATTTATCATTTTCGGCGGATTGAAACGCGTTGTGACAGTTTCGCAG    618

BSNT_02998___    619 TTAATTGTGCCGGTTATGGCAGGCATTTATATT---CTTATCGCTTTATT    665
                     ||.||.||.|||||.|||||...|||||||.||   |||   ||||||||
BL01180___als    619 TTGATCGTTCCGGTCATGGCGATCATTTATCTTGGACTT---GCTTTATT    665

BSNT_02998___    666 TGTTGTCATCACGAATATTACGGCTTTC-----CCTGGCGTTATCGCTAC    710
                     |||.||..|.|||||||||     |.||     ||.|.||||.||||.|.
BL01180___als    666 TGTCGTGCTGACGAATATT-----TCTCAAATACCGGCCGTTTTCGCGAT    710

BSNT_02998___    711 AATTGTTAAAAATGCTTTAGGTTTTGAACAAGTCGTCGGCGG--CGGAAT    758
                     .|||||.||..|||||||.||..|.||.||..|.|..||.||  ||  .|
BL01180___als    711 GATTGTGAAGGATGCTTTCGGGATCGAGCAGATTGCAGGGGGTACG--CT    758

BSNT_02998___    759 AGGCGGCATCATCGTTATCGGTGCGCAACGCGGACTTTTTTCAAACGAAG    808
                     .|||.|||||||..|||||||||||.|.|||||..|.|||||||||||||
BL01180___als    759 CGGCAGCATCATTATTATCGGTGCGAAGCGCGGTTTGTTTTCAAACGAAG    808

BSNT_02998___    809 CAGGAATGGGGAGCGCACCAAACGCGGCTGCGACGGCTCATGTATCCCAT    858
                     |.||||||||.|||||.||.|||||.||.|||||.||..||||.||.||.
BL01180___als    809 CCGGAATGGGAAGCGCGCCGAACGCAGCAGCGACTGCCAATGTCTCTCAC    858

BSNT_02998___    859 CCGGCAAAGCAAGGCTTTATTCAAACATTAGGCGTATTTTTCGATACATT    908
                     ||.||.||||||||||||||.|||||..|.||||||||.||.|||||..|
BL01180___als    859 CCCGCGAAGCAAGGCTTTATCCAAACGCTTGGCGTATTCTTTGATACGAT    908

BSNT_02998___    909 TATCATATGTACGT-CCACAGCATTTATTATTTTGCTGTACAGTGTAACG    957
                     ..||||.||.| || |.|||||.|||||.||..||||||.||.|.|.|||
BL01180___als    909 GGTCATCTGCA-GTGCAACAGCCTTTATGATCCTGCTGTTCAATCTGACG    957

BSNT_02998___    958 C----CAAAAGGC--GACGGCATCCAAGTCACACAGGCTGCTCTTAACCA   1001
                     |    ||||..||  ||||||||.|||.|.|||||.||.||..|..|.||
BL01180___als    958 CCTGGCAAAGAGCTTGACGGCATTCAAATTACACAAGCAGCCATGCAGCA   1007

BSNT_02998___   1002 TCATATTGGAGGCTGGGCGCCGACTTTCATCGCAGTCGCAATGTTCTTGT   1051
                     |||.||||||.||||||||||..|.||..|||||||.||.||.||..|||
BL01180___als   1008 TCACATTGGAAGCTGGGCGCCTGCATTTGTCGCAGTGGCGATTTTTCTGT   1057

BSNT_02998___   1052 TTGCATTCAGTTCAGTTGTCGGCAACTATTATTATGGCGAGACAAACATT   1101
                     |.||.|||||||||.|.|||||.|||||.||||||||.|||||.||||||
BL01180___als   1058 TCGCTTTCAGTTCAATCGTCGGAAACTACTATTATGGTGAGACGAACATT   1107

BSNT_02998___   1102 GAATTTATTAAAACAAGCAAAAC----ATGGCTGAACATTTACCGTATCG   1147
                     |||||||||||||..|||||.||    .|.||||    |||||||||..|
BL01180___als   1108 GAATTTATTAAAAAGAGCAAGACGGCGCTTGCTG----TTTACCGTACAG   1153

BSNT_02998___   1148 CTGTAATTGCTATGGTTGTGTATGGATCTTTATCAGGCTTCCAAATCGTT   1197
                     |.||..|.||.|||||..|.|..||||||.||||.||.|||||..|.||.
BL01180___als   1154 CCGTTGTAGCAATGGTGATCTTCGGATCTGTATCCGGTTTCCAGCTTGTG   1203

BSNT_02998___   1198 TGGGATATGGCGGACCTCTTTATGGGTATCATGGCGCTGATCAACTTAAT   1247
                     |||||.||||||||..|.||||||||..|.||||||.|.||.|||.|.||
BL01180___als   1204 TGGGACATGGCGGATTTATTTATGGGATTAATGGCGATCATTAACCTGAT   1253

BSNT_02998___   1248 TGTGATTACGCTGCTGTCAAACG---TTGCCTAC-AAAGTGTATAAAGAT   1293
                     ||.||||..|||.||.||   ||   ||| ||.| ||||||...|||||.
BL01180___als   1254 TGCGATTCTGCTTCTTTC---CGGAATTG-CTGCGAAAGTGCTGAAAGAC   1299

BSNT_02998___   1294 TACGCGAAACAGCGTAAACAAGGACTTGATCCTGTATTCAAAGCGAAAAA   1343
                     ||..|..|||||||.|||..||||....|.||.||.||.||.||   ||.
BL01180___als   1300 TATACTGAACAGCGCAAAGCAGGAAAGAACCCCGTCTTTAAGGC---AAG   1346

BSNT_02998___   1344 C---ATCCCAGGGCTGAAAAACGCTGAAACATGGGAAGATGAGAAACAA-   1389
                     |   ||.|||||.||||||||..|.||..|.||||||||.|||||..|| 
BL01180___als   1347 CTCGATTCCAGGTCTGAAAAATACAGAGGCTTGGGAAGACGAGAAGGAAA   1396

BSNT_02998___   1390 ----------GAAGTATAA   1398
                               |||  ||||
BL01180___als   1397 CATTGCAATCGAA--ATAA   1413


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