Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02998 and BL01180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_02998___alsT.1.5803.seq
# -bsequence dna-align/BL01180___alsT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02998___alsT-BL01180___alsT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02998___alsT-BL01180___alsT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02998___alsT
# 2: BL01180___alsT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1469
# Identity: 1019/1469 (69.4%)
# Similarity: 1019/1469 (69.4%)
# Gaps: 127/1469 ( 8.6%)
# Score: 3397.5
#
#
#=======================================
BSNT_02998___ 1 ATGGAGTCTTTTTT---CAATAGTTTGATTAATATTCCAAGTGATTTCAT 47
|||||.....|||| |.|.| |.||.|||.|.||.||.|.|||.||
BL01180___als 1 ATGGAAGAAATTTTAAGCGAAA---TCATCAATGTCCCGAGCGGTTTTAT 47
BSNT_02998___ 48 CTGGAAATACCTATTT----TATATTTTAATAGGGCTTGGATTATTTTTT 93
.||| ||.||||| |||||.||||||||..|.||..|.||.||
BL01180___als 48 TTGG----ACTTATTTAGTCTATATATTAATAGGAATAGGCCTGTTCTT- 92
BSNT_02998___ 94 ACCATACGTT----------TTGGTTTTATCCAATTCCGTTATTTTATTG 133
|||||| ||.||| ||||||||.|||||..|.|
BL01180___als 93 ----TACGTTTAAATTGAAATTCGTT-----CAATTCCGCTATTTCTTCG 133
BSNT_02998___ 134 AAATGTTCAGAATAGT---------AGGGGAGAAGCCGGAAGGAAATAAA 174
|.|||||..|.||.|| ||.||||| ||||| |||
BL01180___als 134 AGATGTTTCGTATCGTCGGACAAAAAGAGGAGA------AAGGA---AAA 174
BSNT_02998___ 175 GGTGTTTCATCTATGCAGGCATTCTTTATTTCGGCCGCATCCCGAGTCGG 224
||.||.||.|||.|||||||||||||||||||.|||||.|||||.|||||
BL01180___als 175 GGCGTCTCGTCTTTGCAGGCATTCTTTATTTCCGCCGCTTCCCGTGTCGG 224
BSNT_02998___ 225 CACAGGGAATTTGACTGGTGTAGC-CTTAGCAATTGCGACAGGCGGACCA 273
.||.||.||..||||.|||||.|| ||| ||..||||.|||||||||||.
BL01180___als 225 AACGGGTAACCTGACCGGTGTGGCGCTT-GCTGTTGCAACAGGCGGACCG 273
BSNT_02998___ 274 GGCGCTGTATTTTGGATGTGGGTAGTAGCTGC-AGTAGGCATGGCTTCAA 322
||.||.||.||||||||||||||.||.|| || .||.||.||||||||||
BL01180___als 274 GGAGCGGTCTTTTGGATGTGGGTCGTCGC-GCTTGTCGGAATGGCTTCAA 322
BSNT_02998___ 323 GCTTTGTTGAGAGTACGTTAGCGCAGCTTTATAAGGTGAGAGACGGGGAG 372
|||||||.||.||||||.|.||.||..|.||.|||||.|.||||||.||.
BL01180___als 323 GCTTTGTGGAAAGTACGCTGGCTCAAGTCTACAAGGTCAAAGACGGCGAT 372
BSNT_02998___ 373 GATTTCCGCGGAGGCCCGGCTTACTATATTCAAAAGGGTCTTGGTGCCAG 422
.|||||.|.||||||||.|||||.||.||..||||.|..||.||.|||||
BL01180___als 373 CATTTCAGAGGAGGCCCTGCTTATTACATGGAAAAAGCGCTGGGCGCCAG 422
BSNT_02998___ 423 ATGGCTTGGCATCGTTTTTGCAATCTTAATTACTGTCTCATTCGGCTTGA 472
||||.|.||.||..|.|||||..|.||||||||..|..||||||||||||
BL01180___als 423 ATGGATGGGGATTATCTTTGCCGTTTTAATTACAATTACATTCGGCTTGA 472
BSNT_02998___ 473 TTTTTAACGCTGTTCAAACAAATACAATTGCTGGAGCATTGGAT----GG 518
|||||||.||.||||||.|.||.||.||.|..|| ||.||| ||
BL01180___als 473 TTTTTAATGCGGTTCAAGCCAACACGATCGTCGG----TTCGATGCAAGG 518
BSNT_02998___ 519 CGCATTCCATGTGAATAAAATAGTTGTAGCCATAGTTCTGGCGGTTTTAA 568
.||.|||.|..||.||||||.|||.||||.|||..|.||.||.|...|.|
BL01180___als 519 GGCTTTCAACCTGGATAAAACAGTGGTAGGCATCATCCTTGCTGCAATCA 568
BSNT_02998___ 569 CTGCGTTTATCATTTTCGGCGGTTTAAAACGTGTTGTCGCTGTTTCACAG 618
|.|..|||||||||||||||||.||.|||||.|||||..|.|||||.|||
BL01180___als 569 CCGGATTTATCATTTTCGGCGGATTGAAACGCGTTGTGACAGTTTCGCAG 618
BSNT_02998___ 619 TTAATTGTGCCGGTTATGGCAGGCATTTATATT---CTTATCGCTTTATT 665
||.||.||.|||||.|||||...|||||||.|| ||| ||||||||
BL01180___als 619 TTGATCGTTCCGGTCATGGCGATCATTTATCTTGGACTT---GCTTTATT 665
BSNT_02998___ 666 TGTTGTCATCACGAATATTACGGCTTTC-----CCTGGCGTTATCGCTAC 710
|||.||..|.||||||||| |.|| ||.|.||||.||||.|.
BL01180___als 666 TGTCGTGCTGACGAATATT-----TCTCAAATACCGGCCGTTTTCGCGAT 710
BSNT_02998___ 711 AATTGTTAAAAATGCTTTAGGTTTTGAACAAGTCGTCGGCGG--CGGAAT 758
.|||||.||..|||||||.||..|.||.||..|.|..||.|| || .|
BL01180___als 711 GATTGTGAAGGATGCTTTCGGGATCGAGCAGATTGCAGGGGGTACG--CT 758
BSNT_02998___ 759 AGGCGGCATCATCGTTATCGGTGCGCAACGCGGACTTTTTTCAAACGAAG 808
.|||.|||||||..|||||||||||.|.|||||..|.|||||||||||||
BL01180___als 759 CGGCAGCATCATTATTATCGGTGCGAAGCGCGGTTTGTTTTCAAACGAAG 808
BSNT_02998___ 809 CAGGAATGGGGAGCGCACCAAACGCGGCTGCGACGGCTCATGTATCCCAT 858
|.||||||||.|||||.||.|||||.||.|||||.||..||||.||.||.
BL01180___als 809 CCGGAATGGGAAGCGCGCCGAACGCAGCAGCGACTGCCAATGTCTCTCAC 858
BSNT_02998___ 859 CCGGCAAAGCAAGGCTTTATTCAAACATTAGGCGTATTTTTCGATACATT 908
||.||.||||||||||||||.|||||..|.||||||||.||.|||||..|
BL01180___als 859 CCCGCGAAGCAAGGCTTTATCCAAACGCTTGGCGTATTCTTTGATACGAT 908
BSNT_02998___ 909 TATCATATGTACGT-CCACAGCATTTATTATTTTGCTGTACAGTGTAACG 957
..||||.||.| || |.|||||.|||||.||..||||||.||.|.|.|||
BL01180___als 909 GGTCATCTGCA-GTGCAACAGCCTTTATGATCCTGCTGTTCAATCTGACG 957
BSNT_02998___ 958 C----CAAAAGGC--GACGGCATCCAAGTCACACAGGCTGCTCTTAACCA 1001
| ||||..|| ||||||||.|||.|.|||||.||.||..|..|.||
BL01180___als 958 CCTGGCAAAGAGCTTGACGGCATTCAAATTACACAAGCAGCCATGCAGCA 1007
BSNT_02998___ 1002 TCATATTGGAGGCTGGGCGCCGACTTTCATCGCAGTCGCAATGTTCTTGT 1051
|||.||||||.||||||||||..|.||..|||||||.||.||.||..|||
BL01180___als 1008 TCACATTGGAAGCTGGGCGCCTGCATTTGTCGCAGTGGCGATTTTTCTGT 1057
BSNT_02998___ 1052 TTGCATTCAGTTCAGTTGTCGGCAACTATTATTATGGCGAGACAAACATT 1101
|.||.|||||||||.|.|||||.|||||.||||||||.|||||.||||||
BL01180___als 1058 TCGCTTTCAGTTCAATCGTCGGAAACTACTATTATGGTGAGACGAACATT 1107
BSNT_02998___ 1102 GAATTTATTAAAACAAGCAAAAC----ATGGCTGAACATTTACCGTATCG 1147
|||||||||||||..|||||.|| .|.|||| |||||||||..|
BL01180___als 1108 GAATTTATTAAAAAGAGCAAGACGGCGCTTGCTG----TTTACCGTACAG 1153
BSNT_02998___ 1148 CTGTAATTGCTATGGTTGTGTATGGATCTTTATCAGGCTTCCAAATCGTT 1197
|.||..|.||.|||||..|.|..||||||.||||.||.|||||..|.||.
BL01180___als 1154 CCGTTGTAGCAATGGTGATCTTCGGATCTGTATCCGGTTTCCAGCTTGTG 1203
BSNT_02998___ 1198 TGGGATATGGCGGACCTCTTTATGGGTATCATGGCGCTGATCAACTTAAT 1247
|||||.||||||||..|.||||||||..|.||||||.|.||.|||.|.||
BL01180___als 1204 TGGGACATGGCGGATTTATTTATGGGATTAATGGCGATCATTAACCTGAT 1253
BSNT_02998___ 1248 TGTGATTACGCTGCTGTCAAACG---TTGCCTAC-AAAGTGTATAAAGAT 1293
||.||||..|||.||.|| || ||| ||.| ||||||...|||||.
BL01180___als 1254 TGCGATTCTGCTTCTTTC---CGGAATTG-CTGCGAAAGTGCTGAAAGAC 1299
BSNT_02998___ 1294 TACGCGAAACAGCGTAAACAAGGACTTGATCCTGTATTCAAAGCGAAAAA 1343
||..|..|||||||.|||..||||....|.||.||.||.||.|| ||.
BL01180___als 1300 TATACTGAACAGCGCAAAGCAGGAAAGAACCCCGTCTTTAAGGC---AAG 1346
BSNT_02998___ 1344 C---ATCCCAGGGCTGAAAAACGCTGAAACATGGGAAGATGAGAAACAA- 1389
| ||.|||||.||||||||..|.||..|.||||||||.|||||..||
BL01180___als 1347 CTCGATTCCAGGTCTGAAAAATACAGAGGCTTGGGAAGACGAGAAGGAAA 1396
BSNT_02998___ 1390 ----------GAAGTATAA 1398
||| ||||
BL01180___als 1397 CATTGCAATCGAA--ATAA 1413
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