Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05695 and BL01174
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_05695___narJ.1.5803.seq
# -bsequence dna-align/BL01174___narJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05695___narJ-BL01174___narJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05695___narJ-BL01174___narJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05695___narJ
# 2: BL01174___narJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity: 391/602 (65.0%)
# Similarity: 391/602 (65.0%)
# Gaps: 106/602 (17.6%)
# Score: 1123.0
#
#
#=======================================
BSNT_05695___ 1 ----ATGAACACCACAGACCGGCAAATTACGTTCT--CCGCTCTATC-CA 43
|||.| ||||||...|||| .||||.| |||||||.|| .|
BL01174___nar 1 ATGGATGGA----ACAGACAAACAAA--CCGTTTTTGCCGCTCTTTCTTA 44
BSNT_05695___ 44 CTCTTCTCTCTTATCCGGATGAAGAGTGGAGAGCCGAGATTCCCGATTGG 93
| ||.|||||.||.||.|||||||||||||||...||...|.||||.|||
BL01174___nar 45 C-CTCCTCTCCTACCCTGATGAAGAGTGGAGAAAAGAACGTTCCGAATGG 93
BSNT_05695___ 94 AAG--GCTCTTATCCATGAAATC-AGC---AACCG--GCAAATCCGGGAG 135
.|| |.|| |||...|||||| ||| ||.|| |.|| |||
BL01174___nar 94 CAGCAGATC--ATCGGCGAAATCGAGCATGAAGCGCTGAAA-----GGA- 135
BSNT_05695___ 136 AAGCTGC-TGCACTTTTTCGAAGCGTCAGC-CAGCTT----TTCACCGGA 179
.|.|||| ||| |||.||.||| ||| |.|||| |||..|.||
BL01174___nar 136 CATCTGCTTGC-CTTCTTGGAA-----AGCGCGGCTTCCTATTCGTCTGA 179
BSNT_05695___ 180 AGCGCTGATTGAACAC-TATGTCTATACATTCGACTTTGGGAAAAAAACA 228
.|...|||||||| || ||.||.|||||.||.||.||.||.|||||||||
BL01174___nar 180 GGAATTGATTGAA-ACATACGTATATACGTTTGATTTCGGCAAAAAAACA 228
BSNT_05695___ 229 AATATGTATGTCACCTACTTTAACTCGGGCGAGCAAAGGGAACGCGGCGT 278
||..|.|||||||||||.||.|||||.|||||.||||||||.|||||..|
BL01174___nar 229 AACCTTTATGTCACCTATTTCAACTCCGGCGAACAAAGGGAGCGCGGTAT 278
BSNT_05695___ 279 TGAATTGCTGCATTTAAAAAACACATACGAGCAATCCGGTTTCCTGCCGA 328
||||||||||||..|.|||.|....||..||||.||||||||.|.|||||
BL01174___nar 279 TGAATTGCTGCAGCTGAAAGATCTGTATCAGCAGTCCGGTTTTCAGCCGA 328
BSNT_05695___ 329 CAGAGAAAGAGCTGCCTGATTATCTGCCGCTGATGCTGGAATTTGC---- 374
||||.|||||||||||.||||||||||||||.|||||.||||||||
BL01174___nar 329 CAGATAAAGAGCTGCCGGATTATCTGCCGCTCATGCTTGAATTTGCCGCA 378
BSNT_05695___ 375 --TGCGGCTGCAGAAATTGAAGCAGCGAGAAGCGTGTTTGAGAAATAT-- 420
|||||.|..||||| ||||.|| .|| |||||...|||.||
BL01174___nar 379 GTTGCGGATCAAGAAA---AAGCTGC----TGC-TGTTTTCCAAAAATAC 420
BSNT_05695___ 421 -CTGTCCAA---TGTGAGG----GAGCTGGCATCCCGTCTCGAAAAAAAT 462
|.| ||| || ||.| |||.|.|||.| |.|| |.|.|||
BL01174___nar 421 GCAG--CAAACCTG-GAAGAATTGAGATCGCAGC---TTTC--AGAGAAT 462
BSNT_05695___ 463 GACAG--TATATACGCTGAACTGCTGCACG------TGCTGCTGGCCGCG 504
||.|| |.|||||.|.| .|..||.||| |||||.|
BL01174___nar 463 GAAAGCATCTATACACCG--TTATTGGACGGATTAATGCTGAT------- 503
BSNT_05695___ 505 CTT-GAAAACATTGGCGTACGTGAAAGCGTTGAAGGGGCTGTTCAGGCAT 553
||| ||..|.|||||.|| |||||| ||| |||.|||.|||
BL01174___nar 504 CTTAGAGGAAATTGGTGT---TGAAAG----GAA-----TGTACAGCCAT 541
BSNT_05695___ 554 GA 555
||
BL01174___nar 542 GA 543
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