Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05713 and BL01169
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:50
# Commandline: needle
# -asequence dna-align/BSNT_05713___albA.1.5803.seq
# -bsequence dna-align/BL01169.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05713___albA-BL01169.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05713___albA-BL01169.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05713___albA
# 2: BL01169
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1611
# Identity: 658/1611 (40.8%)
# Similarity: 658/1611 (40.8%)
# Gaps: 771/1611 (47.9%)
# Score: 1056.0
#
#
#=======================================
BSNT_05713___ 1 TTGTTTATAGAGCAGATGTTTCCATTTATTAATGAAAGTGTAAGGGTTCA 50
BL01169 0 -------------------------------------------------- 0
BSNT_05713___ 51 CCAGCTTCCTGAGGGCGGCGTGTTAGAAATCGACTAC-TTGCG----CGA 95
|| || ||| ||||| |||
BL01169 1 ----------------------------AT-GA-TACTTTGCGATTTCGA 20
BSNT_05713___ 96 TAATGTCTCCATTTCTGACTTTGAGT-ATTT-GGATCTCAACAAAACGGC 143
.|| ||||||.|||.| .|| |||| |||.|| .|.||.|||
BL01169 21 CAA-GTCTCCGTTTAT-------CGTCATTTGGGAGCT---GACAAGGGC 59
BSNT_05713___ 144 TTACGAGCT------------TTGCATGCGCATGGATGGC-CAAA--AAA 178
||.|||||| |||| .|.|||| .||| |||| |||
BL01169 60 TTGCGAGCTCAAGTGCCTTCATTGC-CGGGCAT---CGGCTCAAAATAAA 105
BSNT_05713___ 179 CAGCTGAGCAGATTTT----AGCTGAGCAATGTGCAGTGTATGATGAATC 224
| || |||..| |||| |||
BL01169 106 C------GC-GATCCTCGGGAGCT-----------------------ATC 125
BSNT_05713___ 225 ACCGGAAGACCATAAAGATTGGTATTACGACATGCTCAA---CATGCTCC 271
.|.|.||||....||||||| ||.| ||| |||| |||||
BL01169 126 CCTGAAAGAGGGAAAAGATT--TAAT-CGA-----TCAAATTCATGC--- 164
BSNT_05713___ 272 AGA---ACAAGCAGGTTATTCAGCTT---GGAAACCGGGCCAGCCGCCAT 315
|| ||||.|...|..|...|||| ||| |||.|.|| |
BL01169 165 -GATGGACAATCCCCTCCTCGTGCTTACAGGA-----GGCGATCC----T 204
BSNT_05713___ 316 ACAATCACCACGAG----------CGGAAGCAATGAATTTCCGATGCC-- 353
..|||.| ||| ||..|..|.||||| |||||
BL01169 205 TTAATGA----GAGACGACGTATTCGCCATTATTGAAT-----ATGCCGT 245
BSNT_05713___ 354 CC---------TGCACGCCACCTTTGAACTGACGCACCGCTGTAATTTGA 394
|| |.|.||.|.|| .||| |.|||
BL01169 246 CCAAAAAGGGGTTCGCGTCTCC------ATGA--CCCCG----------- 276
BSNT_05713___ 395 AATG---CGCCCACTGTTATTTGGAAAGCTCACCTGAAGCGCTCGGCACC 441
|.|| ||||.|.||||| ||...||||||.|
BL01169 277 AGTGCCACGCCGAATGTTA-----------CAAGAGAAGCGAT------- 308
BSNT_05713___ 442 GTGTCGATTGAGCAATTCAAAAAAACGGCTGAT----ATG------CTGT 481
|| |.|.||||| ||.|||.|||.|.|| ||| |.|.
BL01169 309 ---TC-AATCAGCAA---AAGAAATCGGGTTATCCCGATGGGCGTTCAGC 351
BSNT_05713___ 482 TTGATAAC-----------GGTGTATTGACATGCGAAATCACAGGCGGAG 520
||| .|| ||.| ||| |||| ||||....|||.|
BL01169 352 TTG--GACGGCCCGACCCGGGAG-ATT--CATG----ATCATTTTCGGGG 392
BSNT_05713___ 521 AA--------ATTTTTGTCCATCCAAACGCCAATGAGATTCTTGACTATG 562
|| ..|||||.|| ||||||||
BL01169 393 AACGGACGGGTCTTTTGACC----------------------TGACTATG 420
BSNT_05713___ 563 TGTGTAAAAAGTTCAAAAAAGTCGCTGTCTTAACAAACGGAACACTCATG 612
|||..| |.||||| |||.|||||
BL01169 421 --------AAGGCC-----ATTCGCT---------------ACATTCATG 442
BSNT_05713___ 613 CGAAAAGAGAGC-----CTGGAGCTTTTGAAGGCTTACAAGCAAAAAATC 657
||.|..||| |||.||.|| |||
BL01169 443 ---AATGTCAGCTGCCTCTGCAGATT--------------------AAT- 468
BSNT_05713___ 658 ATCGTCGGCATTTCTCTTGATAGTGTCAATTCCGAGGTCC-ATGAC-TCC 705
|.|||| ||| ||| ||| ||.|| ||.
BL01169 469 ACCGTC-------------ATA--------TCC----TCCTATAACATCG 493
BSNT_05713___ 706 TTTAGAGGGA-GAAAAGGCTCTTTTGCCCAAA-CTTGTAAAACGATAAAA 753
.|||...||| ||||.|| |||| ||..|.|||..||..||
BL01169 494 ATTACCTGGATGAAATGG----------CAAAGCTGATCAAAGAATTGAA 533
BSNT_05713___ 754 TTG-------TTGAGTGACCACGGTATATTTGTCAGAGTC-------GCC 789
.|| |.||||| .|| |.|||.|| ||| |||
BL01169 534 CTGCGTACTATGGAGTG-----TGT-TTTTTCTC---GTCCCGACAGGCC 574
BSNT_05713___ 790 ATGTCTGTCTTCGAAAAAAACATGTGGGAAATCCACGATATG----GCCC 835
..| |||| |.||||| |||||| .|||
BL01169 575 GCG--------CGAA--------GCGGGAA------GATATGATTTCCCC 602
BSNT_05713___ 836 AAAAGGTTCGGGATCTCGGAGCGAAGGCGTTTTCTTACAATTGGGTT--G 883
||| |||.|..|.| .|||.|.||.||| ||.| |
BL01169 603 ----GGT---GGACCATGAA--AAAGTCTTTCTCT--------GGCTCAG 635
BSNT_05713___ 884 ACGATTTCGG---AAGAGGCAGGGATATT---ATCCATCCAACGAAAGAC 927
.|| ||.|| ||||.|| |..|.|| |||.| |||||.||..
BL01169 636 CCG--TTTGGCAAAAGAAGC--GCCTTTTGACATCAA---AACGACAGCA 678
BSNT_05713___ 928 GCCGAGCAGCACC-GCAAGTTTATGGAATACG------AGCAAAATGTGA 970
|||.||||..||| ||..|| || |||||||..||.
BL01169 679 GCCCAGCACTACCGGCGGGT----------CGTCATTCAGCAAAAAATGC 718
BSNT_05713___ 971 TTGATGAGTTTAAAGATCTGATTCC-----GATTATTCCCTATGAGAGAA 1015
..||.|.| |||||.| || ||..||.|.|||||
BL01169 719 GGGAAGCG---AAAGACC-----CCCACATGAAAATCCGCTATG------ 754
BSNT_05713___ 1016 AACGCGCGGCAAATTGCGGCGCTGGCTGGAAGTCCATTGTGATCAGCCCG 1065
|||.||| ||| ||.|...|||| .|.|| ||| |||
BL01169 755 AACACGC-----ATT-----GCAGAAAGGAA---AAATG-GAT--GCC-- 786
BSNT_05713___ 1066 TTCGGCGAAGTACGTCCTTGCGCC---CTCTTTCCAAAGGAATTTTCATT 1112
.||||||.| |||.||| ||| |.||||| |
BL01169 787 ATCGGCGGA--------TTGGGCCGGGCTC---CGAAAGG---------T 816
BSNT_05713___ 1113 GGGAAATATTTTTCATGATTCCTATG--AAAG----CATCTTTAACTCCC 1156
|.||| |.||| ||.| |||.||||.|||||
BL01169 817 GTGAA----------------CGATGGCAACGGGTTCATGTTTATCTCCC 850
BSNT_05713___ 1157 CTCTCG----------TCCA-----------------TAAA--CTGTGGC 1177
.|.||| |||| |||| | ||.
BL01169 851 ATATCGGTGATGTATATCCAAGCGGACTCCTGCCGGTTAAAGCC---GGA 897
BSNT_05713___ 1178 AA-----GCG--CAGGCG--------------CCGCGGTTCAGCGAACAT 1206
|| ||| |||.|| |||||..|||.|||.|.|
BL01169 898 AACATCCGCGAACAGCCGCTGGCTGAGATTTACCGCGAATCACCGATCTT 947
BSNT_05713___ 1207 T--GCAT----GAAA----GAC------------AAATGC---------- 1224
| |.|| |||| ||| ||||||
BL01169 948 TAAGGATCTTCGAAATCCGGACGGATTTAAAGGGAAATGCGGCGTCTGTG 997
BSNT_05713___ 1225 ----CCGTTCA-----GCGGCTATT-------GCG--------------G 1244
||| ||| |||||..|| ||| .
BL01169 998 AATTCCG-TCATGTGTGCGGCGGTTCGCGCTCGCGTGCTTATGCTCTGAC 1046
BSNT_05713___ 1245 AGGCTGTTACTTAAAA--------GGGCTGAACTCTAACAAATATCACCG 1286
||||..||||.||.|| |.||||.|.| .|||| .|||
BL01169 1047 AGGCGATTACCTAGAAAGCGATCCGAGCTGCATT------TATAT-TCCG 1089
BSNT_05713___ 1287 AAAAAACATTTGCTCTTGGGCGAAAAATGAACAATTAGAAGACGTGGTCC 1336
|| .||| |||.||.||
BL01169 1090 AA--------GGCT-TTGCGCTAA-------------------------- 1104
BSNT_05713___ 1337 AGCTTATTTAG 1347
BL01169 1104 ----------- 1104
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