Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05707 and BL01166
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05707___narK.1.5803.seq
# -bsequence dna-align/BL01166___narK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05707___narK-BL01166___narK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05707___narK-BL01166___narK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05707___narK
# 2: BL01166___narK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1236
# Identity: 805/1236 (65.1%)
# Similarity: 805/1236 (65.1%)
# Gaps: 159/1236 (12.9%)
# Score: 2640.5
#
#
#=======================================
BSNT_05707___ 0 -------------------------------------------------- 0
BL01166___nar 1 ATGGCAAATCGTCAAAAAATACAATTACCGCTGCAGTCATTTAGTTTAGT 50
BSNT_05707___ 1 ----------ATGGTTTGGGTGCTGATTTCATCACTCATTTCCCAAAT-- 38
|||||||||||..|||||||.|| ||| |||
BL01166___nar 51 CGCAGGATTTATGGTTTGGGTATTGATTTCCTC-----TTT----AATGC 91
BSNT_05707___ 39 --CACATTAGATATTCATTTAAGCAAGG------------------GTGA 68
|||| |||||| ||| |.||
BL01166___nar 92 CCCACA------------TTAAGC-AGGACATCGCCCTGACAGACAGCGA 128
BSNT_05707___ 69 GATTTCTTTAGTGACCGCGATTCCTGTGATCCTCGGGTCGCTTCTCCGCA 118
|.|.||..|.||.||.||.|||||.||.||.|||||||||||||||.|.|
BL01166___nar 129 GGTCTCCCTTGTTACGGCCATTCCGGTCATACTCGGGTCGCTTCTCAGGA 178
BSNT_05707___ 119 TTCCTTTAGGGTATTTAACGAACAGGTTTGGCGCGCGGCTCATGTTTATG 168
||||..|.||.||.|..||||||||.|||||.||..|..|.|..||.|||
BL01166___nar 179 TTCCGCTGGGCTACTACACGAACAGATTTGGAGCAAGAATTACATTCATG 228
BSNT_05707___ 169 GTCAGCTTCATCCTGCTTTTATTTCCTGTATTTTGGATCAGTATCGCGGA 218
.|||||||..|.||||||.|.||.||.||.|||||||||||.|..||.||
BL01166___nar 229 ATCAGCTTTTTGCTGCTTCTGTTCCCGGTTTTTTGGATCAGCACAGCCGA 278
BSNT_05707___ 219 TTCTCTGTTTGATTTAATCGCAGGCGGCTTTTTCTTAGGGATCGGGGGAG 268
|||.|||||.||.||.|||...||||||||.|||.|.||.|||||.||||
BL01166___nar 279 TTCGCTGTTCGACTTGATCCTTGGCGGCTTCTTCCTCGGCATCGGCGGAG 328
BSNT_05707___ 269 CGGTGTTTTCCATTGGAGTGACCTCCCTCCCGAAATATTATCCGAAAGAA 318
||||.||||||||.||.||.||.||.||.||||||||.||.||.||||||
BL01166___nar 329 CGGTCTTTTCCATCGGGGTCACATCACTGCCGAAATACTACCCTAAAGAA 378
BSNT_05707___ 319 AAGCACGGTGTCGTCAATGGGATTTACGGTGCAGGAAATATCGGGACAGC 368
||||||||..|.|||||||||||.|||||.||.||.||..||||.|||||
BL01166___nar 379 AAGCACGGGTTTGTCAATGGGATCTACGGCGCTGGGAACGTCGGTACAGC 428
BSNT_05707___ 369 CGTTACGACATTTGCAGCGCCGGTTATCGCTCAAGCCGTCGGGTGG--AA 416
..||||.||.|||||.||.||.|||.||||..||.|||.||||||| ||
BL01166___nar 429 GATTACTACGTTTGCCGCTCCTGTTGTCGCAAAAACCGCCGGGTGGGAAA 478
BSNT_05707___ 417 ATCAACCGTGCAGATGTATCTGATTTTGCTGGCTGTCTTTGCCTTACTGC 466
|| ||.||||.||||||..|..|.||..|.||.||.||.||.|||.||.
BL01166___nar 479 AT--ACGGTGCGGATGTACATCGTGTTAGTCGCCGTATTCGCTTTATTGA 526
BSNT_05707___ 467 ACGTGTTGTTTGGCGACAGGCAT-GAGAAGAAGGTCAAA-------GTTT 508
||.|..|..||||.| || ||.||||| .|||| ||.|
BL01166___nar 527 ACTTTATCCTTGGAG------ATCGAAAAGAA--ACAAAAGTTACGGTAT 568
BSNT_05707___ 509 CTGTTA-AGACTCAAATCAAAGCCGTTTACCGAAAT----CATGTGCTAT 553
||||.| ||| .|||||.||.||.||.||||||||| ||| |||
BL01166___nar 569 CTGTAACAGA-GCAAATGAAGGCAGTCTACCGAAATCAGACAT----TAT 613
BSNT_05707___ 554 GGTTTCTGAGCCTGTTTTATTTTATTACGTTCGGTGCCTTTGTCGCCTTC 603
|||||.|.|||.|||||||.||.|||||.|||||..|.||.|||||.||.
BL01166___nar 614 GGTTTTTAAGCTTGTTTTACTTCATTACATTCGGATCTTTCGTCGCGTTT 663
BSNT_05707___ 604 ACTATCTATCTGCCGAACTTTCTGGTGGAGCATTTTGGGCTGAATCCTGC 653
||.||.|||||.|||||||||||.||..|.||.||.|||||..||||.|.
BL01166___nar 664 ACGATTTATCTTCCGAACTTTCTTGTTAATCACTTCGGGCTTGATCCCGT 713
BSNT_05707___ 654 AGATGCCGGCTTGCGGACGGCTGGCTTTATTGCGGTTTCTACGCTGCTCA 703
.|||.|.||..||.|.||.||.||.|||||.||.||..|.||..|.||.|
BL01166___nar 714 CGATTCAGGGCTGAGAACCGCCGGATTTATCGCTGTCGCCACTTTTCTGA 763
BSNT_05707___ 704 GGCCTGCAGGCGGATTCCTGGCTGATAAAATGAGCCCGCTCCGCA--TCT 751
||||||..|||||.|..|||||.||.|||.|.|.|||||| |.| |.|
BL01166___nar 764 GGCCTGTCGGCGGCTGGCTGGCAGACAAATTCAACCCGCT--GAAGCTGT 811
BSNT_05707___ 752 TGATGTTTGTTTTTGCCGG--GCTTACATTATCAGGCATTATCCTATCAT 799
||||||.|||.|||||||| || ||.||.|||||.|||.|..|..|.|
BL01166___nar 812 TGATGTATGTATTTGCCGGCTGC--ACCTTGTCAGGGATTTTATTGGCCT 859
BSNT_05707___ 800 TCTCGCCGACAATCGGCCTTTATACGTTTGGATCATTAACCGTGGCTGTC 849
|.|||||||...||||.||.||...||||||...|||||||||.||.||.
BL01166___nar 860 TTTCGCCGAGCCTCGGACTGTACGGGTTTGGGGTATTAACCGTTGCCGTG 909
BSNT_05707___ 850 TGCTCAGGCATAGGAAACGGGACTGTTTTTAAACTGGTGCCTTTCTATTT 899
|||.|.||..|.||||||||||...|.|||||.||.|||||..|.|||||
BL01166___nar 910 TGCGCCGGACTCGGAAACGGGATCATCTTTAAGCTCGTGCCGCTTTATTT 959
BSNT_05707___ 900 TTCCAAGCAAGCGGGGATTGCCAATGGGATTGTGTCTGCCATGGGCGGAT 949
|||.||.||.||.||.||.|..||||||||.||.||.||.||||||||.|
BL01166___nar 960 TTCAAATCAGGCCGGCATCGTTAATGGGATCGTATCAGCGATGGGCGGCT 1009
BSNT_05707___ 950 TAGGCGGCTTTTTTCCTCCGCTCATATTGGCGAGTGTATTTCAGGCAACA 999
|.||.||.|||||.||.||.|||||..||.|.||.||.|||||||||||.
BL01166___nar 1010 TGGGAGGATTTTTCCCGCCTCTCATCCTGTCAAGCGTTTTTCAGGCAACC 1059
BSNT_05707___ 1000 GGCCAGTACGCGATCGGGTTTATGGCGCTTTCAGAGGTGGCGTTAGCCAG 1049
|||||.||.||||||||.||.||||||||.|||||.|.|||..|.||.||
BL01166___nar 1060 GGCCATTATGCGATCGGATTCATGGCGCTGTCAGAAGCGGCTCTTGCAAG 1109
BSNT_05707___ 1050 TTTTGTCCTTGTCATATGGATGTATTGGCAGGAA-AGAATGAAAACA--- 1095
.|||||..|.||..|.||||||||||..|||||| .||| .||||||
BL01166___nar 1110 CTTTGTGATCGTGGTCTGGATGTATTTTCAGGAAGTGAA-CAAAACATCG 1158
BSNT_05707___ 1096 ---CACACGGAGAGAAACAGCCAGAGCATCAACTAA 1128
.|.|||.|| |||| |.|||..| |||
BL01166___nar 1159 TCCAAAACGAAG-------GCCA-ACCATTTA-TAA 1185
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