Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04058 and BL01160

See Amino acid alignment / Visit BSNT_04058 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_04058___rpmA.1.5803.seq
#    -bsequence dna-align/BL01160___rpmA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04058___rpmA-BL01160___rpmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04058___rpmA-BL01160___rpmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04058___rpmA
# 2: BL01160___rpmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     256/285 (89.8%)
# Similarity:   256/285 (89.8%)
# Gaps:           3/285 ( 1.1%)
# Score: 1176.0
# 
#
#=======================================

BSNT_04058___      1 ATGCTTAGATTAGATCTTCAGTTTTTCGCTTCTAAAAAAGGAGTAGGTTC     50
                     |||||.||||||||||||||||||||.||.||||||||||||||||||||
BL01160___rpm      1 ATGCTAAGATTAGATCTTCAGTTTTTTGCATCTAAAAAAGGAGTAGGTTC     50

BSNT_04058___     51 TACAAAGAACGGACGTGACTCTGAGGCTAAACGTTTAGGTGCTAAACGTG    100
                     .||.||.||||||||||||||||||||.||.||..|||||||||||||||
BL01160___rpm     51 AACGAAAAACGGACGTGACTCTGAGGCGAAGCGCCTAGGTGCTAAACGTG    100

BSNT_04058___    101 CTGACGGTCAATTCGTAACAGGCGGTTCTATCCTTTACCGTCAACGCGGA    150
                     |.|||||||||||||||.|.||||||||.||||||||.|||||.||||||
BL01160___rpm    101 CAGACGGTCAATTCGTATCTGGCGGTTCAATCCTTTATCGTCAGCGCGGA    150

BSNT_04058___    151 ACAAAAATTTACCCAGGTGAAAACGTGGGCCGCGGCGGAGATGACACTCT    200
                     ||||||||.||.||||||||||||||.||.||||||||||||||||||||
BL01160___rpm    151 ACAAAAATCTATCCAGGTGAAAACGTTGGGCGCGGCGGAGATGACACTCT    200

BSNT_04058___    201 ATTTGCGAAAATCGACGGAACTGTTAAATTCGAACGTTTCGGCCGTGACC    250
                     ||.|||.|||.|||||||||||||||||||||||||||||||||||.|||
BL01160___rpm    201 ATATGCAAAAGTCGACGGAACTGTTAAATTCGAACGTTTCGGCCGTAACC    250

BSNT_04058___    251 GCAAAAAAGTGAGCGTATATCCTGTAGCTCAATAA    285
                     ||||||||||||||||||||||||||||..||   
BL01160___rpm    251 GCAAAAAAGTGAGCGTATATCCTGTAGCCTAA---    282


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