Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04056 and BL01158
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_04056___spo0B.1.5803.seq
# -bsequence dna-align/BL01158___spo0B.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04056___spo0B-BL01158___spo0B.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04056___spo0B-BL01158___spo0B.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04056___spo0B
# 2: BL01158___spo0B
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 404/613 (65.9%)
# Similarity: 404/613 (65.9%)
# Gaps: 68/613 (11.1%)
# Score: 1243.0
#
#
#=======================================
BSNT_04056___ 1 ATGAAGGATGTTTCAAAAAATCAAGAAGAAAATATAAGCGACACGGCATT 50
|||.|.||...|||.|||||.|.||||.|.|||||...|||.|.|||.||
BL01158___spo 1 ATGGAAGAAACTTCGAAAAAACGAGAAAAGAATATGGACGATAAGGCTTT 50
BSNT_04056___ 51 AACAAACGAACTGATTCATCTGCTTGGCCATTCCCGGCATGATTGGATGA 100
.||..|.||.||.||.||||||||..||||.||..||||.||.|||||||
BL01158___spo 51 GACCCATGAGCTTATCCATCTGCTCAGCCACTCAAGGCACGACTGGATGA 100
BSNT_04056___ 101 ATAAGCTGCAGCTGATTAAAGGAAACTTAAGCTTACAGAAGTATGACCGT 150
||||.|||||..||||||||||||||||||..|||.|.|||||||||||.
BL01158___spo 101 ATAAACTGCAATTGATTAAAGGAAACTTAACATTAAAAAAGTATGACCGC 150
BSNT_04056___ 151 GTCTTTGAAATGATTGAAGAAATGGTTATAGACGCAAAGCACGAATCAAA 200
||.||||||||.||.||.|||.||||.||.||.||..||||.||||||||
BL01158___spo 151 GTATTTGAAATTATCGATGAAGTGGTCATCGAAGCTCAGCATGAATCAAA 200
BSNT_04056___ 201 GCTCTCAAACCTGAAAACACCGCATTTGGCGTTTGATTTTCTTACGTTTA 250
|||.||||||||.|.||..||||....|||||.|||..|.|||||.||||
BL01158___spo 201 GCTTTCAAACCTTAGAATCCCGCGCGCGGCGTATGAGCTGCTTACATTTA 250
BSNT_04056___ 251 ATTGGAAAACCCATTATATGACGCTTGAATATGAAGTTCTCGGAGAAATT 300
|.||||...||||||...||||||||||||||||.||..||||..||.|.
BL01158___spo 251 ACTGGATGGCCCATTCGCTGACGCTTGAATATGAGGTGATCGGTCAAGTC 300
BSNT_04056___ 301 AAGGATTTGTCGGCTTATGATCAAAAGCT-GGCGAAACTGATGAGAAAGC 349
|||||||||||.||||||||..|||.||| |.|| ..||.||.|||||||
BL01158___spo 301 AAGGATTTGTCAGCTTATGAAGAAAGGCTCGTCG-TTCTCATCAGAAAGC 349
BSNT_04056___ 350 TGTTTCATCTGTTTGATCAAGCAGTCAGCAGAGAGAGTGAAAATCATTTA 399
|||||....|.|||||..|.||.||....|.||..||.||.||||||.|.
BL01158___spo 350 TGTTTGGGATTTTTGACGATGCCGTTTTGAAAGGCAGCGACAATCATCTG 399
BSNT_04056___ 400 ACGGTTTCGCTTCAAACGGATCATCCTGACAGACAGC----TGATTCTGT 445
|||.|..||||.||.|||||...|||.||| |||.|| |.| |||.|
BL01158___spo 400 ACGATCACGCTGCAGACGGACGGTCCGGAC-GACCGCCTCGTCA-TCTTT 447
BSNT_04056___ 446 ACCTTGATTTTCACGGCGCCTT--------TG-CCGATCCATC--TGCTT 484
||.|||||.|||||||..|| || |||.| ||| .|..|
BL01158___spo 448 --CTCGATTTCCACGGCGTATTCACAAAGCTGACCGGT--ATCAAAGACT 493
BSNT_04056___ 485 TTGATGATATTC---GGCAGAATGGATATGAGGACATTGATATCATGCGT 531
||.|| .|||| |||.||.| |.| .|||.||||.|||.
BL01158___spo 494 TTCAT--CATTCACTGGCCGACT---TTT-------ATGAAATCAAGCGG 531
BSNT_04056___ 532 TTTGAAATCAC-------GAGT-CA----CGAATGTTTGATTGAAATTGG 569
|||||..|.|| |||| || |||| |||.|.||
BL01158___spo 532 TTTGATGTAACAGACCGTGAGTGCATCGCCGAA------ATTCATAT--- 572
BSNT_04056___ 570 GTTGGACTAG--- 579
|.||
BL01158___spo 573 ------CAAGTAA 579
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