Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04052 and BL01156

See Amino acid alignment / Visit BSNT_04052 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_04052___pheA.1.5803.seq
#    -bsequence dna-align/BL01156___pheA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04052___pheA-BL01156___pheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04052___pheA-BL01156___pheA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04052___pheA
# 2: BL01156___pheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 889
# Identity:     614/889 (69.1%)
# Similarity:   614/889 (69.1%)
# Gaps:          62/889 ( 7.0%)
# Score: 1924.0
# 
#
#=======================================

BSNT_04052___      1 ------ATGAAAGTCGGTTATTTAGGTCCAGCAGCTACATTTACACATCT     44
                           ||||.|||.||||||||||||||||.|||.||.|||||.||.||
BL01156___phe      1 ATGAGTATGAGAGTAGGTTATTTAGGTCCAGAAGCAACTTTTACGCACCT     50

BSNT_04052___     45 AGCAGTCAGTTCTTG-TTTTCAAAACGGCGCCGAACATGTTGC------T     87
                     .||.|||.|.||.|| ||||||    |..||.||.||    ||      |
BL01156___phe     51 TGCCGTCTGCTCCTGCTTTTCA----GATGCAGACCA----GCAAGCATT     92

BSNT_04052___     88 TACCGCACCATTCCGGAGTGTATAGATGCAGCCGTTGCA-GGCGAAGTTG    136
                     ||  .|||.||.||||..||.||.||||| |.||.||.| ||.||..|.|
BL01156___phe     93 TA--ACACGATACCGGCCTGCATGGATGC-GGCGATGAACGGGGAGATCG    139

BSNT_04052___    137 ATTTTGCTTTTGTTCCTTTGGAAAATGC-ATTAGAAGGATCTGTTAATCT    185
                     ||.|.|||.|.||.||..|.|||||||| ||| ||||||||.||.|||||
BL01156___phe    140 ATCTGGCTGTCGTCCCGCTTGAAAATGCGATT-GAAGGATCGGTGAATCT    188

BSNT_04052___    186 AACAATAGACTATTTAATACATGAACAGCC-CTTGCCA-ATCGTGGGTGA    233
                     .|||||||||||.|||||.||.|||||||| |||  .| ||.||.||.||
BL01156___phe    189 GACAATAGACTACTTAATTCACGAACAGCCTCTT--TATATTGTCGGAGA    236

BSNT_04052___    234 AATGA-CGTTGCCGATTCATCAGCACTTGCTCGTCCATCCCTCTAGAGAG    282
                     |||.| ||.| ||.||.|.||||||.|||||.||.|||||..|.|||.|.
BL01156___phe    237 AATCACCGCT-CCCATCCGTCAGCATTTGCTTGTGCATCCTACCAGAAAA    285

BSNT_04052___    283 AATGCATGGAAAGAGCTCGACAAAATTTACTCACATTCACACGCGATTGC    332
                     .|.||.|||.||||..|..|.||..||||.||.|||||.||.||.||.||
BL01156___phe    286 GAGGCTTGGGAAGACATTCAGAAGGTTTATTCCCATTCCCATGCCATCGC    335

BSNT_04052___    333 GCAATGCCATAAATTTCTTCATCGACATTTTCCTTCCGTTCCATATGAAT    382
                     ||||||||||||||||.|.||..|.|..||.|..|||.||||.|.|||||
BL01156___phe    336 GCAATGCCATAAATTTTTGCACAGCCGGTTCCGCTCCATTCCGTTTGAAT    385

BSNT_04052___    383 ACGCCAATTCTACCGGGGCGGCAGCAAAGTTTGTCAGTGACCATCCCGAG    432
                     |.||.|..||.|||||.||.||.|||||.|..||.||.||..||||.||.
BL01156___phe    386 ATGCGACATCCACCGGAGCAGCTGCAAAATACGTGAGCGAAAATCCGGAA    435

BSNT_04052___    433 CTGAATATCGGGGTCATTGCCAATGATATGGCAGCTTCTACATACGAATT    482
                     ..|||.|||||.||.||.||||||||.||||||||...|||.||||.|||
BL01156___phe    436 GAGAACATCGGCGTGATCGCCAATGAAATGGCAGCAGATACTTACGGATT    485

BSNT_04052___    483 AAAAATCGTGAAACGGGATATACAGGATTATAGGGACAATCATACAAGAT    532
                     |.|.|||||.|||.|.|||.|.||.||.|||....|||||||.||.||||
BL01156___phe    486 AGACATCGTCAAAAGAGATGTGCATGACTATGAATACAATCACACGAGAT    535

BSNT_04052___    533 TTGTTATCCTGTC-TCCTGAT---GAAAACATATCTTTTGAAGTGAA--T    576
                     ||||.||.|| || |||.|||   | |..|||..|.|..|  ||.||  .
BL01156___phe    536 TTGTGATGCT-TCATCCGGATCGCG-AGGCATCCCCTCCG--GTCAACCC    581

BSNT_04052___    577 TCAA---AATTGAGTTCTAGGCCCAAAACGACCTTAATGGTCATGCTGCC    623
                     ||||   ||..||     ||.||.||||||||.||..||||.|..||.||
BL01156___phe    582 TCAACTCAAGGGA-----AGACCGAAAACGACTTTGCTGGTGACCCTTCC    626

BSNT_04052___    624 GCAGGATGATCAG-TCCGGGGCGCTGCATAGAGTGCTGTCTGCATTTTCT    672
                     ...|||    ||| ||.||.||.||.||...|||||||||.||.||..|.
BL01156___phe    627 TTCGGA----CAGATCGGGAGCTCTCCACCAAGTGCTGTCGGCTTTCGCC    672

BSNT_04052___    673 TGGAGAAATTT-AAACTTGTCAAAAATTGAGTCACGTCCGACTAAAACCG    721
                     ||||||||||| ||.||| ||.||||||||.||.||.|||||.|||||||
BL01156___phe    673 TGGAGAAATTTGAATCTT-TCTAAAATTGAATCGCGGCCGACAAAAACCG    721

BSNT_04052___    722 GATTAGGCCATTATTTCTTTATTATTGATATTGAGAAAGCGTTTGATGAT    771
                     |..|.|||.||||||||||.||||||||||||||.|..||..|.|||||.
BL01156___phe    722 GTCTCGGCAATTATTTCTTCATTATTGATATTGAAATGGCCCTGGATGAC    771

BSNT_04052___    772 GTATTGATTCCAGGGGCCATGCAG--GAGCTTGAAGCACTCGGCTGCAAA    819
                     ||..||||||||||.||.||  ||  |||||||||||..|.||||||||.
BL01156___phe    772 GTGCTGATTCCAGGTGCAAT--AGCTGAGCTTGAAGCTTTGGGCTGCAAG    819

BSNT_04052___    820 GTGAGGCTTCTGGGTGCATACCAGTCTTACCAATTATAA    858
                     ||||...|.||.|||||.|||.|..|.||...|.|||||
BL01156___phe    820 GTGAAAATGCTCGGTGCCTACAACGCATATACACTATAA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04052 and BL01156

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
