Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04048 and BL01155
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_04048___nadB.1.5803.seq
# -bsequence dna-align/BL01155___nadB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04048___nadB-BL01155___nadB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04048___nadB-BL01155___nadB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04048___nadB
# 2: BL01155___nadB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1770
# Identity: 1045/1770 (59.0%)
# Similarity: 1045/1770 (59.0%)
# Gaps: 369/1770 (20.8%)
# Score: 2835.5
#
#
#=======================================
BSNT_04048___ 1 ATGTCTAAAAAGACGATTGCAGTCATCGGTTCAGGGGCGGCGGCACTTTC 50
||||||.|..||||||||...||..||||..||||.||.||.||..|.||
BL01155___nad 1 ATGTCTCATCAGACGATTATTGTTGTCGGAGCAGGTGCCGCAGCGTTGTC 50
BSNT_04048___ 51 CTTAGCTGCAGCTTTCCCGCCCTCATACGAAGTGACTGTTATCACAAAAA 100
.||.||||||.|..|.|||||.||.||.||||||..|||.||.|| |
BL01155___nad 51 TTTTGCTGCATCCATTCCGCCGTCTTATGAAGTGGTTGTGATGAC----A 96
BSNT_04048___ 101 AAAGC----GTCAAAAACAGCAATTCTGTCTATGCACAAGGCGGGATTG- 145
||||| ||.|||.||||||||||...|...||.||.||.||.||||
BL01155___nad 97 AAAGCATCTGTAAAAGACAGCAATTCAACCCTCGCTCAGGGAGGAATTGC 146
BSNT_04048___ 146 --CTGCGGCCTATGCAAAAGATGACT--CGATTGAAGCC---------CA 182
||||.| ||| ||.|| ||||| || ||
BL01155___nad 147 ATCTGCTG--TAT--------TGCCTCGCGATT----CCTGGTCGCTTCA 182
BSNT_04048___ 183 TCTGGAGGATACGTTATACGCAGGGTGCGGCCATAAT--AATCTAGCTAT 230
|..|||.||.|||||.||.||.|||||||||||.||| ||||
BL01155___nad 183 TGCGGACGACACGTTGTATGCCGGGTGCGGCCACAATCAAATC------- 225
BSNT_04048___ 231 TGCAGCAGACGTATTACATGATGGAA--AAATGATGGTTCAAAGCC-TAT 277
|.|||.| |.|||||||..| ||| ||.|| .||..||| |.|
BL01155___nad 226 -GAAGCGG------TCCATGATGCCATTAAA-GACGG-ACAGCGCCTTGT 266
BSNT_04048___ 278 TG--GAGCGT---------GGATTTCCATT-------CGACCGCAATGAA 309
|| |||| | |.||||||.|| .||| |||
BL01155___nad 267 TGATGAGC-TGATCCTTCAGCATTTCCCTTTTGATACTGAC------GAA 309
BSNT_04048___ 310 CGAGG--CGGTGTTTGTCTTGGAAGAGAAGGGGCCCACTCATACAACCGC 357
..||| .|.|| .|.||.||||.||||||.||.||.||....|||.|.
BL01155___nad 310 TCAGGAAAGCTG--AGCCTCGGAAAAGAAGGCGCGCATTCGGTGAACAGA 357
BSNT_04048___ 358 ATATTTCATGCTGGCGGAGACGCAACAGG-CGGGCTGCTTATCGATTATT 406
||.||.|||||.||.|||||||||||||| |.|| |.|
BL01155___nad 358 ATTTTGCATGCCGGGGGAGACGCAACAGGACAGG-------------AGT 394
BSNT_04048___ 407 TGCTCAAACGGATCAACAGCAAAATCAAGTTAATCG-------------- 442
||.|| ||| .|.|||||||
BL01155___nad 395 TGATC---CGG---------------CACTTAATCGGACGGCTCGGTCCG 426
BSNT_04048___ 443 --------------AGAAT--GAAATGGCAGCAGATTTGCTTATAGAGGA 476
||||| ||||.|||.||.|||||....||.||.||
BL01155___nad 427 CACGTCGTGCTGAAAGAATACGAAACGGCGGCGGATTTATGGATTGAAGA 476
BSNT_04048___ 477 CGGACGATG-TATCGGCGTCATGACAAAAGACAGCAAAGGGCGGCTCAAG 525
||||||.|| |.| ||||||..|||.||||||||| |..|
BL01155___nad 477 CGGACGCTGCTGT-GGCGTCTGGACGAAAGACAGC-----------CGTG 514
BSNT_04048___ 526 GTAAGGCACG-----CAGA-----CGA---AGTTGTGCTGGCTGCCGGCG 562
|.||| ||| |||| ||| .||.||||||||.||.||.|
BL01155___nad 515 GGAAG--ACGTTTCTCAGAAAAGCCGATTTTGTCGTGCTGGCGGCAGGAG 562
BSNT_04048___ 563 GCTGTGGAAACCTGTTTC--TTCACCATACGAATGATCTCACTGTCACAG 610
||||.|||||.||.|||| .||| |.||||||.|.|...||||.|||.
BL01155___nad 563 GCTGCGGAAATCTATTTCAAATCA--ACACGAATAACCGTTCTGTGACAA 610
BSNT_04048___ 611 GTGACGGTCTTTCTCTGGCTTACCGGGCCGGGGCGGAATTAACGGATTTG 660
|.||.|...|||||.||||.||.|||||.||.||.||..|..|.||.|||
BL01155___nad 611 GCGATGCGATTTCTTTGGCGTATCGGGCAGGAGCAGAGCTCGCAGACTTG 660
BSNT_04048___ 661 GAGTTTACTCAGTTTCACCCGACACTGCTTGTGAAAAATGGTGTTTCCTA 710
||.||...|||.|||||.||.|||.|||||||.|||.|.||.....|..|
BL01155___nad 661 GAATTCGTTCAATTTCATCCTACATTGCTTGTCAAAGACGGGCGCGCGCA 710
BSNT_04048___ 711 CGGGCTTGTTTCAGAAGCTGTCAGAGGGGAAG--GCGGATGTTTAGTAGA 758
|||.|||||||||||||||||..|.||.|||| ||.| ||||.| |.||
BL01155___nad 711 CGGACTTGTTTCAGAAGCTGTGCGCGGAGAAGGTGCTG-TGTTGA-TTGA 758
BSNT_04048___ 759 CGAAAACGG-CCGCAGGATTATGGCTGAACGGCATCC---CTTAGGT-GA 803
.|||||||| |.|| ||.|.|||| |.|||||.| |||.|.| ||
BL01155___nad 759 TGAAAACGGACAGC-GGGTGATGG----AAGGCATACATTCTTTGCTGGA 803
BSNT_04048___ 804 CCTGGCTCCAAGAGATATTGTCTCACGGGTTATTCACGAAGAAATGGCAA 853
..|.||.||..|.||..||||.||.||||..||.||| |||
BL01155___nad 804 TTTAGCGCCGCGGGACGTTGTATCTCGGGCGATACAC----------CAA 843
BSNT_04048___ 854 AA----------GGAA--ATCGCGTTTATATAGACTTCAGTGCG-ATTTC 890
|| |||| |.||..|||.||.|.|.||| .|| ||.||
BL01155___nad 844 AAGCTTGCCTGCGGAAGCAGCGTATTTTTAGATATTTC---CCGCATATC 890
BSNT_04048___ 891 TGATTTTGAAACGCGTTTCCCTACCATCACCGCTATTTGTGAAAAAGCAG 940
.||.|||.|||..||.||||||||.||..|..||.||||.||||||||.|
BL01155___nad 891 AGACTTTAAAAGCCGCTTCCCTACGATTTCTTCTCTTTGCGAAAAAGCCG 940
BSNT_04048___ 941 GGGTTGATATCCACAG--------CGGAAAAATTCCTGTTGCTCCGGGAA 982
| .||.||||..| ||| |||||.|||.|.|||||.|
BL01155___nad 941 G----TATTTCCATTGAAGAGGGCCGG----ATTCCGGTTTCACCGGGCA 982
BSNT_04048___ 983 TGCATTTCTTAATGGGAGGTGTTTCAGTTAATCGCTGGGGAGAAACGACA 1032
|||||||.||||||||.||.|||||.||.|||...||||||||||||.|.
BL01155___nad 983 TGCATTTTTTAATGGGGGGCGTTTCTGTGAATAAATGGGGAGAAACGGCT 1032
BSNT_04048___ 1033 GTGCCGGGGCTTTATGCGATTGGCGAGACAGCATGCTCCGGTTTACATGG 1082
||.||....||||.||.|||.||.||..|.||.|||.||||.||.||.||
BL01155___nad 1033 GTTCCAAACCTTTTTGTGATCGGGGAAGCCGCTTGCACCGGCTTTCACGG 1082
BSNT_04048___ 1083 AGCAAACCGGCTTGCAAGCAATTCTTTATTGGAA-GCGCTGGTATTTGGA 1131
.||.|||||.||.||||||||||||.|.|||||| || .|.||.||.|||
BL01155___nad 1083 TGCCAACCGTCTGGCAAGCAATTCTCTCTTGGAATGC-ATCGTCTTCGGA 1131
BSNT_04048___ 1132 AAAAGGGCAGCAGAGCATATT------ATCCAAAAACCG--GTTTATAAC 1173
|..||.||.||.||||..||| ..|||||||||| |..|.|.|.
BL01155___nad 1132 AGGAGAGCGGCGGAGCGGATTCAAGCCTGCCAAAAACCGGAGCCTGTCAG 1181
BSNT_04048___ 1174 AGG-CAATATCAATCAGGGCT-AGAAACCAGTGTCGTCTAC--------- 1212
||| ||||.|| .||| |.|| |||| .|||.|||.|.|
BL01155___nad 1182 AGGCCAATCTC-CTCA-GCCTGAGAA---TGTGACGTATTCTGTTCCTTT 1226
BSNT_04048___ 1213 ----GAGGTGCCGGATAT--AGAGGTGTATGAACTGCAAAGCAAAATGAC 1256
||.|||..|||||| ||| ||| |||||||
BL01155___nad 1227 GACAGATGTGAAGGATATTCAGA--------AAC---------AAATGAC 1259
BSNT_04048___ 1257 AAGCCACATGTCTATTTTGCGG-GAAC-----AAAGCAGTTTG-ATTG-- 1297
| .|||.||||| ||.| .|.|.||..|| ||||
BL01155___nad 1260 A-----------GATTATGCGGCGATCGTGCGTACGGAGGATGAATTGAC 1298
BSNT_04048___ 1298 --AGCT--TAGCATCTGGCTTCATACGC---TGCCTTTTCAGGAA--GTG 1338
||.| .||.| ||||||.| || ||||..|||| || ||.
BL01155___nad 1299 GAAGGTGAAAGAA--TGGCTTGA---GCGAATGCCGGTTCA--AATCGTA 1341
BSNT_04048___ 1339 AATGTGAAGGATATCACAATTCGGCAGATGGAGCTTTCTCATCTATGGCA 1388
||||||||.||.||||||||....|||.|.|||||..|||||.|||||||
BL01155___nad 1342 AATGTGAAAGAAATCACAATAGAACAGCTCGAGCTAGCTCATTTATGGCA 1391
BSNT_04048___ 1389 AACTGCAAAGCTGATGACGTTTTCTGCGCTTTTGCGGGAGGAAAGCAGAG 1438
.|||||.||.|.|||||||...||.||.||..|.||....||||||||.|
BL01155___nad 1392 GACTGCCAAACAGATGACGGCCTCGGCACTGCTTCGTACAGAAAGCAGGG 1441
BSNT_04048___ 1439 G-GGCTCACTTCCGCACCGATTTTC---CTCATGCTGAGGTGAGCTGGCA 1484
| ||| ||.|.|||..|.||||.|| |.|.||.|||....|.||||||
BL01155___nad 1442 GCGGC-CATTACCGTTCGGATTGTCCGGCGCCTGATGATAAAAACTGGCA 1490
BSNT_04048___ 1485 AGG-AAGACAAATTGTCCATACAAAAAAAGGAACGAAGATCAGAAAAAAC 1533
.|| ||| |||||.||.||.||||||...||.|..|||||||||.|||||
BL01155___nad 1491 CGGCAAG-CAAATCGTTCACACAAAAGGCGGGATCAAGATCAGACAAAAC 1539
BSNT_04048___ 1534 GAGGGGATTTGGAACAATGAA-----TCAT--TTACAGCTGAAAAAATTA 1576
||.||||||..|||..|||.| |||| |||.
BL01155___nad 1540 GAAGGGATTGTGAAATATGCAGCGGTTCATACTTAG-------------- 1575
BSNT_04048___ 1577 CTGAATCACTTTTTTCTTGA 1596
BL01155___nad 1575 -------------------- 1575
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