Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02101 and BL01147
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_02101___yjoA.1.5803.seq
# -bsequence dna-align/BL01147.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02101___yjoA-BL01147.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02101___yjoA-BL01147.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02101___yjoA
# 2: BL01147
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity: 308/516 (59.7%)
# Similarity: 308/516 (59.7%)
# Gaps: 102/516 (19.8%)
# Score: 866.5
#
#
#=======================================
BSNT_02101___ 1 ----------ATGAGCCAATCCAATCAAATTG-TCAGCCATTTTTTATCC 39
|.||.|..||| | |||| .|.|||.|.|||
BL01147 1 ATGGAACGGAAAGACCGCATC----------GTTCAG-GAATTTATGTCC 39
BSNT_02101___ 40 CATCGAAACGTGACCAATGAGCTTGC---CGAAAAAATCAGCAAAGACCA 86
||.||....|||||..|.||.|| | |.|||||.|.|..||| |.||
BL01147 40 CACCGCCTTGTGACAGAAGAACT--CATTCAAAAAATTGATGAAA-AACA 86
BSNT_02101___ 87 TTACAGCTACAAACCGGCAGAAACATCAATGTCAGCAGAAGAGCTGGTCA 136
|..|...|||||||||.|.|||||.||.|||.|||||.|.||.||.||||
BL01147 87 TCTCGATTACAAACCGACTGAAACGTCGATGCCAGCAAAGGAACTTGTCA 136
BSNT_02101___ 137 AACACATTCTTACGTCTTTCCA---CTT--GTTC----GCAAATGTCATT 177
..||.||.||....||||||.| ||| .||| |||
BL01147 137 CGCATATGCTGCAATCTTTCTATACCTTTGCTTCGGCGGCA--------- 177
BSNT_02101___ 178 AAAGAAGGCAATGCCTCACCTTTTCAAAACAAGCAGGAAGAAACAGAAAC 227
||.|||||.||.|.....||||||.||||.||||..||||||||||..||
BL01147 178 AAGGAAGGGAACGGAGAGCCTTTTAAAAAGAAGCCCGAAGAAACAGGGAC 227
BSNT_02101___ 228 A-----GATCTCAATGTTCTGGCAAAAACATATACAGAAAAAAC-----G 267
| ||.| |..||.||.|||||.|||||||||||||| .
BL01147 228 AAGCTTGAGC-----GAGCTTGCCAAAACGTATACAGAAAAAACAAAAAC 272
BSNT_02101___ 268 GCCGCT---ATCCTTGAACAGCTGACTGAAGAGCAGCTGGACAGAGAAAT 314
||.||| ||||||.| |.|| ||||| |..||||..|.|||.|
BL01147 273 GCTGCTTGAATCCTTTA----CGGA-TGAAG---AATTGGATCGTGAAGT 314
BSNT_02101___ 315 TGATCTGACATCCGCTTTCGGCAGAAAAGTCACAGGCCGCG---CGCTGC 361
.|||.||||...||..|||||..||||||| ||.|.||| .|||.|
BL01147 315 CGATTTGACCGGCGTCTTCGGACGAAAAGT---AGCCGGCGAACAGCTAC 361
BSNT_02101___ 362 TTCAGCTTGCAAT-GGAGCATGAAATTCACCATAAAGGCAACCTGTTCGT 410
|.|||||.||.|| ||| ||.|||||||||||.||||||||.|||||.||
BL01147 362 TGCAGCTCGCGATCGGA-CACGAAATTCACCACAAAGGCAATCTGTTTGT 410
BSNT_02101___ 411 GTATGTGCGGGAAATGGGCCACACTGAGCTTCCTTTCTATCAGCAGCGCA 460
.|||||.||.||||||||.|||||.||.||.||||| |.|
BL01147 411 TTATGTCCGTGAAATGGGACACACGGATCTGCCTTT-----------GTA 449
BSNT_02101___ 461 TGTAG----------- 465
||||.
BL01147 450 TGTAAAGATTCATTGA 465
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