Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04023 and BL01144
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:05
# Commandline: needle
# -asequence dna-align/BSNT_04023___ruvA.1.5803.seq
# -bsequence dna-align/BL01144___ruvA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04023___ruvA-BL01144___ruvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04023___ruvA-BL01144___ruvA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04023___ruvA
# 2: BL01144___ruvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 462/613 (75.4%)
# Similarity: 462/613 (75.4%)
# Gaps: 14/613 ( 2.3%)
# Score: 1717.0
#
#
#=======================================
BSNT_04023___ 1 GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATAT 50
.||||.|||||.||.|||||||||||||||||||||||.|||||||||||
BL01144___ruv 1 TTGATCGAATTCGTAAAAGGGACGATTGATTATGTATCGCCCCAATATAT 50
BSNT_04023___ 51 TGTCATAGAGAACGGCGGCATCGGCTATCAGATTTTCACGCCGAATCCGT 100
||||||.||.||||||||.||||||||||||||.||||||||.|||||||
BL01144___ruv 51 TGTCATTGAAAACGGCGGGATCGGCTATCAGATCTTCACGCCAAATCCGT 100
BSNT_04023___ 101 TTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATC 150
||||.||||||.|.|..|||.|.|||||.||.|.||||||||||.||.|.
BL01144___ruv 101 TTATTTATAAGAAAAACAGCAAAGAAACAATCTATACATACCATTATGTA 150
BSNT_04023___ 151 AGAGAGGATGCTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGC 200
|||||.||..|...|.||||.|||||.|||||.|||||.||.||.||...
BL01144___ruv 151 AGAGAAGACACGAATGCGCTGTACGGCTTTTCGACAAGGGAAGAAAAAAT 200
BSNT_04023___ 201 GCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCGAAAGGAGCAC 250
|||.|||||.||..||.|.||.||.||.||.||.|||||.||||||||.|
BL01144___ruv 201 GCTGTTTACGAAAATGCTGAATGTTACGGGGATCGGCCCAAAAGGAGCGC 250
BSNT_04023___ 251 TTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAA 300
||||.|||.|.|..||.||.|||||.||||||||.||..||||.||.||.
BL01144___ruv 251 TTGCGATCCTCGCTTCCGGCGATCCGGGAGCGGTGATTGAAGCGATCGAG 300
BSNT_04023___ 301 AATGAAGATGAAGCTTTTTTGGTCAAGTTTCCTGGAGTAGGAAAGAAAAC 350
|||||.||.|||||.|||.|.|||||.|||||.||.|||||.||.|||||
BL01144___ruv 301 AATGAGGACGAAGCATTTCTCGTCAAATTTCCCGGCGTAGGCAAAAAAAC 350
BSNT_04023___ 351 CGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC 400
.|||.|.|||||.||.||.||..|.|||||.|||||.||.||||..||.|
BL01144___ruv 351 GGCAAGGCAGATCATCCTTGACCTGAAAGGGAAGCTTGCGGATGCCGTTC 400
BSNT_04023___ 401 CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAA 450
|||||||...||...||||||||||.||||||||..|| .|||||
BL01144___ruv 401 CTGAAATCGCTGCCGATCTGTTTAACCATGAAGAGCGG------GAGCAA 444
BSNT_04023___ 451 A------CAGCGGAAACGGCTCTTGAAGAAGCACTTGAAGCCCTCAGGGT 494
| .|||||.||||||||||||.|||||.||||||||..|.||||.
BL01144___ruv 445 ATTCATGAAGCGGCAACGGCTCTTGAGGAAGCGCTTGAAGCATTGAGGGC 494
BSNT_04023___ 495 TCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAG 544
.|||||.|||.|.||....|||||.|||||.||.|..||||| .||.||.
BL01144___ruv 495 GCTCGGCTATTCCGATCGGGAAATTAAAAAAGTCCAGCCTCA-TTTGAAA 543
BSNT_04023___ 545 AAGAAATTGG-GCTGACAACAGACCAATATGTGAAAAAAGCATTACAAAA 593
|||.||..|| |||..|.|||||.|||||.||.|||||||||||.|||||
BL01144___ruv 544 AAGGAAGAGGCGCTTTCGACAGATCAATACGTTAAAAAAGCATTGCAAAA 593
BSNT_04023___ 594 ACTATTAAAGTAA 606
|.|.|||||||||
BL01144___ruv 594 ATTGTTAAAGTAA 606
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