Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04032 and BL01135

See Amino acid alignment / Visit BSNT_04032 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:05
# Commandline: needle
#    -asequence dna-align/BSNT_04032.1.5803.seq
#    -bsequence dna-align/BL01135___yrzF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04032-BL01135___yrzF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04032-BL01135___yrzF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04032
# 2: BL01135___yrzF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 722
# Identity:     442/722 (61.2%)
# Similarity:   442/722 (61.2%)
# Gaps:         145/722 (20.1%)
# Score: 1247.5
# 
#
#=======================================

BSNT_04032         1 ATGCTGACAAAAGCAGAGGCACTGGCCCATTCCGTCATATACCGCAAGAA     50
                        .|||.|||            |||.|||.||    |||.|    ||||
BL01135___yrz      1 ---GTGAAAAA------------GGCGCATACC----TATGC----AGAA     27

BSNT_04032        51 -CAGCAGA-TTTGAT--------AAAG-TCAAAGAG---------AAATC     80
                      |.|.|.| |.||||        |||| ||||..||         |||.|
BL01135___yrz     28 GCCGTAAAGTATGATACGAAAAAAAAGTTCAACAAGCTTATCCAAAAACC     77

BSNT_04032        81 CGAGGAATTAACACTAATCGGCAAGGGAAGAAGCGCCTATGTGTT-----    125
                     |||.||.||...|.|.|||||.||.||.||.|||||.||.||.||     
BL01135___yrz     78 CGATGACTTGGAATTGATCGGGAAAGGCAGGAGCGCATACGTTTTTAAGC    127

BSNT_04032       126 TGCCTTAACAGAAGGCGGTCGAAAAATGGCGCTGAAAGTATTTTTTCCGG    175
                     ||.||.|  |||.|||||..|..|||||||.||.|||||.||||||||.|
BL01135___yrz    128 TGACTGA--AGAGGGCGGCAGGGAAATGGCTCTTAAAGTCTTTTTTCCTG    175

BSNT_04032       176 AAT--------ATCGAGCGACAGCAGTCAAAGAAGCAGCGATCTATGAAA    217
                     |||        ||||     |.|||   |..|||||.|.|||.||..|||
BL01135___yrz    176 AATTTAAGAACATCG-----CCGCA---AGGGAAGCGGAGATTTACAAAA    217

BSNT_04032       218 AATTAGC---CGGGTCCGCATT-CTATCCTGACATTTACGAAAC-TGGCG    262
                         |||   |.|.|.||.||| .||||||||.||.||.||||| .|||.
BL01135___yrz    218 ----AGCTTTCTGATTCGAATTATTATCCTGATATATATGAAACAGGGCC    263

BSNT_04032       263 ATTCATTTATTCTCATGGAATATATTAAAGGTGAAACCTTTTATAACTGT    312
                     | ||||.||||.|.|||||.|||||||||||..|.||.||||||.|.|||
BL01135___yrz    264 A-TCATATATTTTAATGGAGTATATTAAAGGATATACTTTTTATGAGTGT    312

BSNT_04032       313 CTGAAGAAAGGCATTGCAATCAGTGATGACATGATTCAGC-AGG------    355
                     .|.||.|||||||||...|||..||||||||||| ||.|| |||      
BL01135___yrz    313 TTAAACAAAGGCATTCGGATCGATGATGACATGA-TCTGCGAGGTCGACC    361

BSNT_04032       356 -----TTGAA-GAAGCGCTTTCTGACGCCCGGGCAGCCGGACTGAACCCG    399
                          ||||| ||.||       ||.||   ||.|  .|||.||||.||.
BL01135___yrz    362 GCGCATTGAACGATGC-------GAGGC---GGAA--AGGATTGAATCCA    399

BSNT_04032       400 TCAGATATTCATTTGCGAAATCTGATATTGACAGAAACCGGGGCGGTGCG    449
                     ||.|||||.||..|.|||||.||||||.||||          ||.||..|
BL01135___yrz    400 TCCGATATCCACCTCCGAAACCTGATACTGAC----------GCCGTCTG    439

BSNT_04032       450 G----------GTGATTGATGTTGCGAGATTTGAGCAAACAAAAACATGC    489
                     |          ||.||.|||||.||.||||||..|||.||.|||..||||
BL01135___yrz    440 GAACAATCAAAGTCATCGATGTCGCCAGATTTTTGCAGACGAAAGAATGC    489

BSNT_04032       490 ACGCAGTGGGACGACTTAAAATCCGCATATCATGCACTCTACAAAAAA--    537
                     |.|||||||||.|||||||||.|.||.|||||..|.||.|||||||||  
BL01135___yrz    490 AGGCAGTGGGATGACTTAAAAACAGCCTATCAAACCCTTTACAAAAAAAG    539

BSNT_04032       538 CCGATATTCCCCAAAAAGATTCCGGGTT----TTTGGCTGGAGATCATCG    583
                     |||  .|||||..|.|.|.||||    |    |.|||.||||..|.||||
BL01135___yrz    540 CCG--TTTCCCGCAGAGGCTTCC----TAAGATGTGGATGGAATTGATCG    583

BSNT_04032       584 C--ATTTTTATATAAGAAAGATTGGTTTCAAAAGCATTTCGCACAGCGGA    631
                     |  ||.|||||| ||.|||| .|||.|||||||.||.|..|| |..|.||
BL01135___yrz    584 CTTATCTTTATA-AAAAAAG-CTGGCTTCAAAAACAATGGGC-CTCCAGA    630

BSNT_04032       632 AAAGAAAATATT-----CTTAA    648
                     ||| ||.|.|||     |.|||
BL01135___yrz    631 AAA-AACAAATTTCACCCGTAA    651


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