Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04008 and BL01130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_04008___yrvD.1.5803.seq
# -bsequence dna-align/BL01130___yrvD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04008___yrvD-BL01130___yrvD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04008___yrvD-BL01130___yrvD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04008___yrvD
# 2: BL01130___yrvD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 346
# Identity: 218/346 (63.0%)
# Similarity: 218/346 (63.0%)
# Gaps: 74/346 (21.4%)
# Score: 656.5
#
#
#=======================================
BSNT_04008___ 1 ATGAATAAACAATGGACCATTATTTTC-GCACTTATTTTCACCTTAATTG 49
|||||.|||||||||| |.|||.||.| |||||||||||.||.|||||||
BL01130___yrv 1 ATGAACAAACAATGGA-CGTTAATTGCTGCACTTATTTTTACATTAATTG 49
BSNT_04008___ 50 TCGCTATTTTCGCAGTCATTAATGTTCGATCCGTAGAA-GTTGATTACCT 98
|.|||.|||||||.|||||||||||| ||.|||..||| |||||||..||
BL01130___yrv 50 TTGCTGTTTTCGCGGTCATTAATGTT-GAACCGGTGAAGGTTGATTTTCT 98
BSNT_04008___ 99 GTTTGGAAGATCAGAATGGCCGCTCATTCTTGTTATTTTGGGCTCAGTTT 148
.|||||.|.|.||||||||||..|.||.||.||.|||||||..||.||.|
BL01130___yrv 99 TTTTGGTACAGCAGAATGGCCTTTGATCCTGGTGATTTTGGTGTCGGTAT 148
BSNT_04008___ 149 TAATGGGAGCGCTGATCGTATTTTCTGTCGGCATTTTTCAGGTAATGAAA 198
|.|||||.|||||.|||.|....||.|.||||..|||.|||.|.||
BL01130___yrv 149 TGATGGGGGCGCTTATCATCGGCTCGGCCGGCGCTTTCCAGATCAT---- 194
BSNT_04008___ 199 TTGAAGCGG--GAAATAAAAACCT---TGCG-----GAAAGAAAATAGAA 238
|||| |||| |||.|.|| .||| |||||| ||||
BL01130___yrv 195 -----GCGGCTGAAA-AAAGAGCTCAAGGCGCTCAAGAAAGA----AGAA 234
BSNT_04008___ 239 C-AGCAATACATAAACAAGAGGATACTCATCTTGCTGATCAGACT----G 283
| .|||| || |||| |||| ||| |
BL01130___yrv 235 CGGGCAA------------AG------CATC---CTGA----ACTCGAAG 259
BSNT_04008___ 284 ACACACAGGATGCATCAGCCATGATTGAGAAA-----AAAGACTAG 324
.|..||.||..|| ||| .|||| |||||||||
BL01130___yrv 260 CCGAACCGGCGGC----GCC-------CGAAAACCAGAAAGACTAG 294
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