Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04004 and BL01124
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:03
# Commandline: needle
# -asequence dna-align/BSNT_04004___relA.1.5803.seq
# -bsequence dna-align/BL01124___relA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04004___relA-BL01124___relA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04004___relA-BL01124___relA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04004___relA
# 2: BL01124___relA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2214
# Identity: 1779/2214 (80.4%)
# Similarity: 1779/2214 (80.4%)
# Gaps: 21/2214 ( 0.9%)
# Score: 7086.0
#
#
#=======================================
BSNT_04004___ 1 ATGGCGAACGAACAAGTATTGACTGCCGAGCAAGTTATAGATAAAGCGCG 50
||||||||||||||||||||.||.||.||||||||.||.||.||.|||..
BL01124___rel 1 ATGGCGAACGAACAAGTATTAACCGCTGAGCAAGTCATTGAGAAGGCGAA 50
BSNT_04004___ 51 CAGCTATCTATCTGATGAGCATATCGCATTTGTCGAAAAAGCATATCTGT 100
.||.||.||.||.|||||.|||.|.||.|||.|..||||.||.||||.||
BL01124___rel 51 AAGTTACCTTTCCGATGAACATGTTGCTTTTATAAAAAAGGCTTATCAGT 100
BSNT_04004___ 101 ACGCTGAAGATGCTCATCGCGAGCAATACCGCAAATCGGGCGAGCCATAT 150
||||.|||||.||.||||||||.|||||||||||||||||||||||.|||
BL01124___rel 101 ACGCGGAAGACGCACATCGCGAACAATACCGCAAATCGGGCGAGCCGTAT 150
BSNT_04004___ 151 ATTATTCATCCGATTCAGGTTGCGGGGATTCTCGTCGATCTTGAAATGGA 200
|||||.||||||||.|||||.|||||.||.|||||||||.|.||||||||
BL01124___rel 151 ATTATCCATCCGATCCAGGTCGCGGGAATCCTCGTCGATTTAGAAATGGA 200
BSNT_04004___ 201 CCCTTCCACAATCGCGGGCGGATTTTTGCACGATGTCGTGGAAGATACAG 250
|||..|||||||.|||||.||||||.|.||.|||||.||||||||||| |
BL01124___rel 201 CCCCGCCACAATAGCGGGAGGATTTCTCCATGATGTGGTGGAAGATAC-G 249
BSNT_04004___ 251 A-TGTGACGCTCGATGACCTGAAAGAAGCATTTTCCGAAGAAGTGGCAAT 299
| .||.|||||.||.||..|.||.||||||||...|||||||||.||.||
BL01124___rel 250 AGCGTAACGCTTGAAGATTTAAAGGAAGCATTCAACGAAGAAGTTGCGAT 299
BSNT_04004___ 300 GCTTGTAGACGGCGTAACGAAACTCGGCAAAATTAAATATAAATCTCAAG 349
||||||.||||||||.|||||.||.||.|||||||||||||||||.||.|
BL01124___rel 300 GCTTGTCGACGGCGTCACGAAGCTTGGGAAAATTAAATATAAATCACAGG 349
BSNT_04004___ 350 AGGAACAGCAGGCGGAAAATCATCGCAAAATGTTTGTCGCTATGGCTCAA 399
|.|||||||||||.|||||||||||.|||||||||||.|||||||||||.
BL01124___rel 350 AAGAACAGCAGGCAGAAAATCATCGGAAAATGTTTGTGGCTATGGCTCAG 399
BSNT_04004___ 400 GATATCAGGGTCATATTGATCAAGCTGGCGGATCGTCTTCACAATATGCG 449
||.|||.|.|||||.|||||||||||||||||.||.||||||||.|||.|
BL01124___rel 400 GACATCCGCGTCATTTTGATCAAGCTGGCGGACCGCCTTCACAACATGAG 449
BSNT_04004___ 450 GACACTGAAACATCTGCCTCAGGAAAAACAGCGGAGAATCTCCAATGAAA 499
.||.|||||.||||||||.||||||||.|||||.|||||.||.|||||.|
BL01124___rel 450 AACCCTGAAGCATCTGCCGCAGGAAAAGCAGCGCAGAATTTCAAATGAGA 499
BSNT_04004___ 500 CGCTGGAAATTTTTGCTCCTTTGGCGCATCGTCTCGGGATTTCAAAAATT 549
||||.|||||.||||||||..||||.|||||.||.||||||||||||||.
BL01124___rel 500 CGCTTGAAATATTTGCTCCGCTGGCTCATCGCCTTGGGATTTCAAAAATA 549
BSNT_04004___ 550 AAGTGGGAATTGGAAGATACGGCGCTCCGTTATTTGAACCCTCAACAATA 599
||||||||..|.||.|||||.||..|.||.|||||.||.||.||.|||||
BL01124___rel 550 AAGTGGGAGCTTGAGGATACCGCTTTACGGTATTTAAATCCGCAGCAATA 599
BSNT_04004___ 600 TTACAGAATTGTCAACCTCATGAAGAAGAAACGTGCAGAACGTGAGCTTT 649
||||.|.||.|||||..|.||||||||.||.||.||.|||.|.||..|.|
BL01124___rel 600 TTACCGGATCGTCAATTTGATGAAGAAAAAGCGGGCCGAAAGGGAATTGT 649
BSNT_04004___ 650 ATGTTGATGAGGTTGTCAATGAAGTGAAGAAACGTGTCGAAGAAGTAAAT 699
|.||.||.|||||.||.||.||||||||.|..||.||||||||.||.|||
BL01124___rel 650 ACGTCGAAGAGGTCGTAAACGAAGTGAAAAGCCGCGTCGAAGAGGTCAAT 699
BSNT_04004___ 700 ATCAAGGCTGACTTCTCGGGACGCCCGAAACATATTTACAGCATTTATCG 749
||.||.||.|||||.||.||.||.|||||.||||||||||||||.||..|
BL01124___rel 700 ATTAAAGCGGACTTTTCCGGCCGGCCGAAGCATATTTACAGCATCTACAG 749
BSNT_04004___ 750 AAAAATGGTGCTGCAAAATAAGCAATTCAATGAGATTTACGATTTGCTGG 799
||||||||.|.|||||||.|||||||||||.||.||||||||.|||||.|
BL01124___rel 750 AAAAATGGCGATGCAAAACAAGCAATTCAACGAAATTTACGACTTGCTCG 799
BSNT_04004___ 800 CTGTCCGTATTCTTGTGAACAGCATAAAGGACTGCTACGCGGTGCTTGGC 849
|.|||||.||.||.||.||||||||.|||||||||||||||||..|.|||
BL01124___rel 800 CAGTCCGGATCCTCGTCAACAGCATCAAGGACTGCTACGCGGTTTTAGGC 849
BSNT_04004___ 850 ATCATTCACACATGCTGGAAACCGATGCCCGGCAGATTCAAAGATTATAT 899
||||||||.||.||||||||.||||||||.||||||||.|||||.|||||
BL01124___rel 850 ATCATTCATACGTGCTGGAAGCCGATGCCGGGCAGATTTAAAGACTATAT 899
BSNT_04004___ 900 CGCAATGCCGAAGCCGAATATGTATCAATCGCTTCATACAACGGTTATTG 949
||||||||||||||||||.|||||.||||||||.||.||.|||||.||.|
BL01124___rel 900 CGCAATGCCGAAGCCGAACATGTACCAATCGCTCCACACCACGGTCATCG 949
BSNT_04004___ 950 GGCCTAAAGGCGATCCGCTTGAAGTGCAGATCCGCACCTTTGAAATGCAT 999
|.||.||.|||||||||||.|||||.||||||.|.||.||||||||||||
BL01124___rel 950 GTCCGAAGGGCGATCCGCTGGAAGTCCAGATCAGGACGTTTGAAATGCAT 999
BSNT_04004___ 1000 GAAATAGCGGAATACGGGGTTGCGGCTCACTGGGCTTATAAAGAAGGAAA 1049
|||||.|||||.|||||..|.||.||.|||||||||||.||||||||.||
BL01124___rel 1000 GAAATTGCGGAGTACGGAATCGCTGCCCACTGGGCTTACAAAGAAGGCAA 1049
BSNT_04004___ 1050 AGCAGCCAATGAAGGTGCAACCTTTGAGAAAAAGCTTTCTTGGTTCCGTG 1099
|...||||||||||.|.|||.||||||.|||||||||||.||||||||.|
BL01124___rel 1050 AAATGCCAATGAAGATTCAAGCTTTGATAAAAAGCTTTCCTGGTTCCGCG 1099
BSNT_04004___ 1100 AAATTTTAGAATTTCAAAATGAATCGACAGATGCAGAAGAATTTATGGAA 1149
|||||||.||||||||.|||||.||||..|||||.|||||||||||||||
BL01124___rel 1100 AAATTTTGGAATTTCAGAATGAGTCGAGCGATGCCGAAGAATTTATGGAA 1149
BSNT_04004___ 1150 TCGCTCAAAATTGATTTGTTCTCTGATATGGTGTATGTCTTTACGCCAAA 1199
||.||.|||||.||||||||.||.||.|||||.|..||.||||||||.||
BL01124___rel 1150 TCTCTTAAAATCGATTTGTTTTCGGACATGGTATTCGTTTTTACGCCGAA 1199
BSNT_04004___ 1200 AGGAGATGTAATCGAGCTTCCGTCCGGTTCTGTTCCGATTGATTTTTCTT 1249
|||.||.||.|||||..|.|||||.||.||.||.|||||.||.|||||.|
BL01124___rel 1200 AGGGGACGTCATCGAATTGCCGTCAGGATCCGTGCCGATCGACTTTTCGT 1249
BSNT_04004___ 1250 ACCGGATTCACTCTGAAATCGGCAATAAAACAATCGGTGCCAAAGTAAAC 1299
||||.||.||.||.|||||.|||||||||||.|||||.||||||||||||
BL01124___rel 1250 ACCGAATCCATTCAGAAATAGGCAATAAAACGATCGGGGCCAAAGTAAAC 1299
BSNT_04004___ 1300 GGAAAAATGGTTACGCTTGACCATAAGCTTCGGACAGGTGATATCGTTGA 1349
||.||||||||.||.|||||..|.|||||.||.|||||.||||||||.||
BL01124___rel 1300 GGCAAAATGGTCACCCTTGATTACAAGCTGCGCACAGGGGATATCGTAGA 1349
BSNT_04004___ 1350 AATTCTCACCTCTAAGCATTCCTACGGTCCGAGCCAGGATTGGGTGAAGC 1399
||||||.||.||.||||||||.|||||||||||.|||||.|||.|.||.|
BL01124___rel 1350 AATTCTGACGTCCAAGCATTCGTACGGTCCGAGTCAGGACTGGATCAACC 1399
BSNT_04004___ 1400 TTGCCCAAACATCCCAAGCGAAGCATAAAATCCGTCAATTCTTTAAGAAA 1449
||||.||.|||||.|||||||||||||||||||||||.||||||||.||.
BL01124___rel 1400 TTGCGCAGACATCTCAAGCGAAGCATAAAATCCGTCAGTTCTTTAAAAAG 1449
BSNT_04004___ 1450 CAGCGGCGTGAAGAAAATGTCGAAAAAGGCCGTGAGTTGGTCGAAAAAGA 1499
|||||..|.||.||||||||||||||||||.|.||..||||.||||||||
BL01124___rel 1450 CAGCGCAGAGAGGAAAATGTCGAAAAAGGCAGAGAACTGGTTGAAAAAGA 1499
BSNT_04004___ 1500 AATTAAAAACCTGGATTTTGAATTGAAGGATGTTTTAAC-GCCGGAGAAT 1548
|||||||||||||||.||||||.|||||||.||.||||| ||| ||||||
BL01124___rel 1500 AATTAAAAACCTGGACTTTGAAGTGAAGGACGTCTTAACAGCC-GAGAAT 1548
BSNT_04004___ 1549 ATTCAAAAGGTTGCTGACAAATTTAATTTCTCAAATGAAGAGGATATGTA 1598
.|.||.|||||.||.||||||||.||.||..|.||||||||.||.|||||
BL01124___rel 1549 CTGCAGAAGGTCGCCGACAAATTCAACTTTGCCAATGAAGAAGACATGTA 1598
BSNT_04004___ 1599 CGCGGCGGTCGGTTACAACGGCATTACTG-CTCTGCAGGTGGCGAACCGC 1647
.||.||.|||||.||.|||||||||||.| |.|| ||.||.||.||||||
BL01124___rel 1599 TGCCGCTGTCGGCTATAACGGCATTACAGCCGCT-CAAGTTGCAAACCGC 1647
BSNT_04004___ 1648 CTAACAGAAAAAGAGAGAAAG--CAGCGCGATCAGGAAGAACAG--GAAA 1693
||.||.||||||||..|.||| || |.||||||||||||||| ||||
BL01124___rel 1648 CTTACGGAAAAAGAACGGAAGATCA--GAGATCAGGAAGAACAGGTGAAA 1695
BSNT_04004___ 1694 AGATCGTTCAGGAAGTTACTGGGGAACCTAAGCCGTACCCGCAA-GGAAG 1742
|| |||||||||.||.||....|||...||.||.||| ||| |||||
BL01124___rel 1696 AG--CGTTCAGGACGTAACGCCTGAAGTGAAACCTTAC---CAAGGGAAG 1740
BSNT_04004___ 1743 AAAACGGGAAGCTGGCGTTCGTGTCAAGGGCATCGACAACCTCCTTG-TC 1791
|||||.|||||.||.|||||.|||||.|||.|.|||||||| .||| ||
BL01124___rel 1741 -AAACGCGAAGCGGGTGTTCGCGTCAAAGGCGTTGACAACCT-TTTGATC 1788
BSNT_04004___ 1792 CGTTTATCAAAATGCTGCAATCCTGTGCCAGGTGATGATATTGTCGGCTT 1841
.|..|.||||||||||||||.|||||.||.||.|||...||.|||||.||
BL01124___rel 1789 AGGCTGTCAAAATGCTGCAACCCTGTTCCGGGAGATCCGATCGTCGGATT 1838
BSNT_04004___ 1842 TATCACAAAAGGCAGAGGGGTTTCGGTCCATCGCGAAGACTGTCCGAATG 1891
.||.|||||||||||.||.||.||.|||||||||||.|||||.|||||||
BL01124___rel 1839 CATTACAAAAGGCAGGGGCGTATCCGTCCATCGCGAGGACTGCCCGAATG 1888
BSNT_04004___ 1892 TCAAAACGAATGAAGCCCAAGAGCGGCTGATCCCGGTAGAGTGGGAGCAT 1941
|...|||.||||||||.|..||.|||||.||.|..|||||.|||||||||
BL01124___rel 1889 TTTTAACAAATGAAGCGCTCGACCGGCTCATTCAAGTAGAATGGGAGCAT 1938
BSNT_04004___ 1942 GAGTCACAGGTTCAAAAGCGCAAGGAATACAATGTTGAGATAGAGATTCT 1991
||..|.|||...||...|.|.||.|||||.||.||.||.||.||||||||
BL01124___rel 1939 GAACCGCAGACCCAGCGGAGAAAAGAATATAACGTCGAAATTGAGATTCT 1988
BSNT_04004___ 1992 TGGGTATGACCGCCGCGGATTGCTGAACGAGGTGCTGCAGGCAGTGAATG 2041
.||.||||||||||||||..|.||.||.||.||.||.||||||||.||||
BL01124___rel 1989 CGGCTATGACCGCCGCGGTCTTCTTAATGAAGTTCTACAGGCAGTTAATG 2038
BSNT_04004___ 2042 AAACGAAAACAAATATTTCATCTGTCTCTGGCAAATCGGATCGCAATAAA 2091
|.||.||||||||||||||||||||.||.||.||||||||.|||||||||
BL01124___rel 2039 AGACAAAAACAAATATTTCATCTGTTTCAGGTAAATCGGACCGCAATAAA 2088
BSNT_04004___ 2092 GTGGCAACCATTCATATGGCGATTTTTATTCAGAATATCAATCACTTGCA 2141
|||||.||.||.|||||||||||.||.|||||.|||||.||.||.|||||
BL01124___rel 2089 GTGGCGACGATCCATATGGCGATCTTCATTCAAAATATTAACCATTTGCA 2138
BSNT_04004___ 2142 CAAAGTCGTCGAGCGTATTAAACAGATTAGAGATATCTACTCTGTGCGCC 2191
.|||||.||.||.||.|||||.|||||.|.||||||.|||||.||||||.
BL01124___rel 2139 TAAAGTAGTTGAACGGATTAAGCAGATCAAAGATATTTACTCCGTGCGCA 2188
BSNT_04004___ 2192 GCGTCATGAACTAA 2205
|.||.|||||.||.
BL01124___rel 2189 GGGTGATGAATTAG 2202
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