Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04000 and BL01122
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_04000___hisS.1.5803.seq
# -bsequence dna-align/BL01122___hisS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04000___hisS-BL01122___hisS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04000___hisS-BL01122___hisS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04000___hisS
# 2: BL01122___hisS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1298
# Identity: 991/1298 (76.3%)
# Similarity: 991/1298 (76.3%)
# Gaps: 46/1298 ( 3.5%)
# Score: 3707.5
#
#
#=======================================
BSNT_04000___ 1 ATGGGATATAACATTCCGAGAGGAACACAGGATATTCTGCCTGGAGAATC 50
|||||||.|||.|||||.||.||||||||.||||||||.||.||||||||
BL01122___his 1 ATGGGATTTAATATTCCAAGGGGAACACAAGATATTCTCCCCGGAGAATC 50
BSNT_04000___ 51 AGATCGCTGGCAGTATGTTGAACAAATTATGAGAGACACTTGCCGCACTT 100
.||.||||||||.|||||.|||.|.|||..||||||.||.||.|...|.|
BL01122___his 51 GGAACGCTGGCAATATGTCGAAAAGATTGCGAGAGAAACGTGTCATGCGT 100
BSNT_04000___ 101 ATCAATATAAAGAAATCCGCACACCGATTTTTGAGCATACAGAACTGTTT 150
|||||||||||||||||||.||.||.||||||||.|||||||||||.|||
BL01122___his 101 ATCAATATAAAGAAATCCGGACGCCTATTTTTGAACATACAGAACTATTT 150
BSNT_04000___ 151 GCCAGAGGCGTCGGAGAATCAACGGATATCGTACAAAAAGAAATGTATAC 200
.||.|.||.||.||||||||.||.|||||.||.|||||||||||||||||
BL01122___his 151 TCCCGCGGGGTGGGAGAATCGACCGATATTGTGCAAAAAGAAATGTATAC 200
BSNT_04000___ 201 CTTCGAGGACCGCAAAGGCAGAAGCCTGACGCTTCGTCCGGAGGGAACAG 250
.||||..|||...|||||.||||||||||||||||||||.||.||.||.|
BL01122___his 201 ATTCGCAGACAAAAAAGGAAGAAGCCTGACGCTTCGTCCTGAAGGCACTG 250
BSNT_04000___ 251 CTGCTGCGGTTCGCGCTTTTAATGAAAACAAGCTGTTCGCAAATCCTGTA 300
|..||||.||.|||.|||||...||||||||.||.||.||||||||.||.
BL01122___his 251 CATCTGCAGTACGCTCTTTTGTGGAAAACAAACTTTTTGCAAATCCGGTT 300
BSNT_04000___ 301 CAGCCGACAAAGCTTTATTATGTCGGGCCGATGTTCCGTTATGAACGTCC 350
||||||||.||||||||.||..|.||.|||||||||||.||||||.|.||
BL01122___his 301 CAGCCGACGAAGCTTTACTACATTGGACCGATGTTCCGCTATGAAAGGCC 350
BSNT_04000___ 351 TCAGACGGGCCGTTACCGCCAGTTTTATCAGTTTGGAATTGAAGCGATTG 400
.|||||||||||.||||||||.||||||||.||.||.||.||||||||.|
BL01122___his 351 GCAGACGGGCCGCTACCGCCAATTTTATCAATTCGGCATCGAAGCGATCG 400
BSNT_04000___ 401 GTTCGAAAGACCCTGCAATCGACGCTGAAGTAATGGCGCTTGCGATGAGT 450
|||||||.||.||.||.||.|||||.||.||.||.||..|.|||||||||
BL01122___his 401 GTTCGAACGATCCGGCGATTGACGCGGAGGTCATTGCTTTGGCGATGAGT 450
BSNT_04000___ 451 ATTTATGAAAAAGCAGGT-TTAGAAAACGTTAAGCTTGTCATAAACAGTC 499
.|.||....|||||.||| |.|| .|||.|.|||||||||||.|||||.|
BL01122___his 451 GTATACCGGAAAGCGGGTCTCAG-CAACCTGAAGCTTGTCATTAACAGCC 499
BSNT_04000___ 500 TCGGCGATCAAGATAGCCGCAAAAGCT-ACAGAGAAGCGCTTGTGAAACA 548
|||||||..||||.||||| ||..||| |||||||||||||..|....||
BL01122___his 500 TCGGCGACAAAGAGAGCCG-AACCGCTCACAGAGAAGCGCTGATCCGCCA 548
BSNT_04000___ 549 CTTCGAGCCTCGCATCGAAGAATTTTGTTCAGACTGCCAGTCCCGGCT-- 596
|||.|||||.||.|||||.||.||||||||||||||.||....|||||
BL01122___his 549 CTTTGAGCCGCGGATCGACGAGTTTTGTTCAGACTGTCAAAAACGGCTCC 598
BSNT_04000___ 597 -GCACACGAACCCGCTTAGAATCTTGGACTGCAAAAAAGACCGAGATCAT 645
||| .||||||||..|.||..|||||||||||||||||.|.||||||
BL01122___his 599 GGCA---AAACCCGCTGCGGATTCTGGACTGCAAAAAAGACAGGGATCAT 645
BSNT_04000___ 646 GAGCTGATGAAATCGGCACCTTCGATT-TTGACATATTTAAATGAAGAAT 694
||.|||.|||||.||||.||.|||||| ||||| ||.|||||||||||||
BL01122___his 646 GAACTGCTGAAAACGGCTCCGTCGATTCTTGAC-TACTTAAATGAAGAAT 694
BSNT_04000___ 695 CAGCCGCTTATTTTGACAAA-GTGAAACAATACTTAAATGATCTTGGCAT 743
|....||.||||||| |||| ||..|.|||||..|.|..||..|.|||||
BL01122___his 695 CTAAAGCATATTTTG-CAAAGGTACAGCAATATCTGACGGACATCGGCAT 743
BSNT_04000___ 744 TTCGTATGAAATCGATCCGAACCTTGTGAGAGGGCTGGATTATTACAACC 793
|.|.|.|||..||||||||||.||.|||||||||||.||.||||||||.|
BL01122___his 744 TGCATTTGAGGTCGATCCGAATCTGGTGAGAGGGCTTGACTATTACAATC 793
BSNT_04000___ 794 ACACCGCATTTGAAATTATGAGCAATGCGGAAGGCTTTGGCGCGATTACG 843
||||.||.||||||||.|||||||||||.||||||||.||.|||||||||
BL01122___his 794 ACACGGCCTTTGAAATCATGAGCAATGCCGAAGGCTTCGGAGCGATTACG 843
BSNT_04000___ 844 ACACTTGCCGGCGGCGGACGCTACGACGGGCTTGTCGAACAGATCGGCGG 893
||.|||||||||||.||.|||||.|||||.|||..|||..||.|||||||
BL01122___his 844 ACGCTTGCCGGCGGGGGGCGCTATGACGGCCTTACCGAGGAGTTCGGCGG 893
BSNT_04000___ 894 ACCTGAAGCACCGGGCATCGGATTTGCGATGAGCATCGAACGCTTGCTTG 943
.||..||||.|||||||||||.|||||||||||||||||||||.|.||.|
BL01122___his 894 TCCGAAAGCGCCGGGCATCGGCTTTGCGATGAGCATCGAACGCCTTCTCG 943
BSNT_04000___ 944 CCGCAATTGATGCTGAA-----AAAAG--AGAGCTGCCTGTTGATAAGGG 986
|||||.|.||||||||| ||||| .|||| .|||.|.||
BL01122___his 944 CCGCACTGGATGCTGAAAATGTAAAAGTCGGAGC-------GGATGAAGG 986
BSNT_04000___ 987 AATCGACTGCTATATCGTCACACTCGGCGAAAAAGCAAAGGATTATTCTG 1036
.||.||||||||||||||.|||||.|||||.|||||.||.||.|||||.|
BL01122___his 987 CATTGACTGCTATATCGTGACACTTGGCGACAAAGCCAAAGACTATTCCG 1036
BSNT_04000___ 1037 TTTCATTGGTGTACAAACTGAGAGAAGCAGGCATTTCCAGTGAAATCGAT 1086
|.||..|..|.||.||||||||||||||.||.||.|||...||||||||.
BL01122___his 1037 TATCCCTTCTCTATAAACTGAGAGAAGCGGGGATATCCGCGGAAATCGAC 1086
BSNT_04000___ 1087 TATGAAAATAAGAAAATGAAAGGCCAGTTTAAAACAGCTGATCGCTTAAA 1136
||||||.|.||.|||||||||||||||||||||.|.||.||.||..|.||
BL01122___his 1087 TATGAACAGAAAAAAATGAAAGGCCAGTTTAAATCCGCCGACCGTCTCAA 1136
BSNT_04000___ 1137 TGCCAGATTTATTGCGATTTTGGGTGAAGATGAGCTTGCCCAAAACAAAA 1186
|||.|.||.|||.||..|||||||.||.|||||.||...||||||..|||
BL01122___his 1137 TGCGAAATATATCGCTGTTTTGGGCGAGGATGAACTGAACCAAAATCAAA 1186
BSNT_04000___ 1187 TCAATGTAAAGGATGCACAGACGGGCG---AACAG---ATTGAAGTGGCA 1230
|.|||||.||.||||...|.||.||.| ||||| || .|||
BL01122___his 1187 TTAATGTCAAAGATGGGAAAACAGGAGATCAACAGGCCAT-----CGGC- 1230
BSNT_04000___ 1231 CTTGATGAATTTATACATGTGATGAAGGCAAAC---CAAAAGGGATAA 1275
||||||||.||.||.|.|.|..||||..||||| .||| |.|||
BL01122___his 1231 CTTGATGATTTCATCCGTTTTTTGAAAACAAACACTGAAA---GTTAA 1275
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