Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01756 and BL01113
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01756___yhfR.1.5803.seq
# -bsequence dna-align/BL01113___yhfR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01756___yhfR-BL01113___yhfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01756___yhfR-BL01113___yhfR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01756___yhfR
# 2: BL01113___yhfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity: 404/610 (66.2%)
# Similarity: 404/610 (66.2%)
# Gaps: 65/610 (10.7%)
# Score: 1215.0
#
#
#=======================================
BSNT_01756___ 1 ATGACAGCCGTTTGTTTAGTAAGACATGGAGAAACCGATTGGAACCTGC- 49
|||||.||..|||||||..|..|.||.||.||.||.||.||||| |||
BL01113___yhf 1 ATGACTGCGATTTGTTTGATCCGGCACGGCGAGACGGACTGGAA--TGCT 48
BSNT_01756___ 50 --AGCAAAAATGCCAAGGCAA-AACCGATATCCCGCTAAACGCAACAGGT 96
||.||||.||| |||.|| |||.||||||||..||||.|.|||.|||
BL01113___yhf 49 TTAGGAAAACTGC--AGGGAAGAACAGATATCCCTTTAAATGAAACCGGT 96
BSNT_01756___ 97 GAACGCCAAGCAAGAGAAACCGGAGAATATGT-AAAG-----GACTTTTC 140
.||...|||||||.|||||||||.|..|.|.| |||| |||
BL01113___yhf 97 AAAAAACAAGCAAAAGAAACCGGGGCGTTTTTGAAAGGGTCCGAC----- 141
BSNT_01756___ 141 TTGGGATATTATTGTGACGAGCCCGCTGAAAAGAGCGAAAAGAACCGCGG 190
|||||..|.||..|.||.|||||..|.|.||||||||||..||||||.|
BL01113___yhf 142 -TGGGACGTCATCATTACAAGCCCTTTAAGAAGAGCGAAAGAAACCGCTG 190
BSNT_01756___ 191 AAATTATTAATGAATATCT-GCATCTTCCGATAGTCGAGATGGATGATTT 239
||||.||.|||.||||.|| |.| |||...||..||||.|||||.|||||
BL01113___yhf 191 AAATCATCAATCAATACCTCGGA-CTTGAAATCATCGAAATGGAGGATTT 239
BSNT_01756___ 240 TA-----AGGAACGCGATTACGGCGACGCGGAGGGCATGCCGCTGGAGGA 284
.| |||| |||||||.||.||.||.||.|||||..|.||.||
BL01113___yhf 240 CATCGAGAGGA-----ATTACGGAGATGCAGAAGGAATGCCATTCGAAGA 284
BSNT_01756___ 285 ACGGACAAAGCGCTATCCAGATAACATCTATCCGAATATGGAAACCTTAG 334
|.|.|..|.||.||||||.|||||....|||||||||..||||.|...||
BL01113___yhf 285 AAGAATGAGGCTCTATCCTGATAAAGAATATCCGAATCAGGAATCAAAAG 334
BSNT_01756___ 335 AAGAACTCACTGACAGGCTGATGGGCG--GTTTGGCAAA-----AGTGAA 377
|||..||..|.||..|||||||||.|| ||| |||| |||||
BL01113___yhf 335 AAGCGCTTGCCGAACGGCTGATGGCCGGCGTT---CAAAAGGTCAGTGA- 380
BSNT_01756___ 378 CCAGGC-GTATCCAAACAAGAAGGTGCTGATCGTGGCGCACGGTGCGGCA 426
|| ||||||..||||.||.|||||||||||.||.|||||.||.||.
BL01113___yhf 381 ----GCGGTATCCGGACAAAAAAGTGCTGATCGTCGCACACGGAGCCGCG 426
BSNT_01756___ 427 ATTCACGCCCTGCTGACAGAAATATCCGGCGGTGACCCGGAGCTTCAAAG 476
||.|||||.||.|||.||.||||.||...|||.|||....|.||..|||.
BL01113___yhf 427 ATACACGCGCTTCTGTCAAAAATCTCAAACGGCGACATCAACCTGGAAAA 476
BSNT_01756___ 477 CACCCGTCTCGTCAACGCCTGCCTCAGCAACATTGAATTTGCA-GAAGAA 525
|||....||||||||.||||||||.||||||||..||||| || |||.|.
BL01113___yhf 477 CACGAAGCTCGTCAATGCCTGCCTAAGCAACATCAAATTT-CATGAAAAT 525
BSNT_01756___ 526 AAATGGCGGATAAAAGACTATAA--TATCAACAGCCACTTATCCGGCTTT 573
|||||||...|.||.||.||.|| |.|| ||| ||| |||
BL01113___yhf 526 AAATGGCATGTGAAGGATTACAACCTTTC-ACA-CCA----------TTT 563
BSNT_01756___ 574 ATCAAATAA- 582
.|||.||.|
BL01113___yhf 564 GTCAGATTAA 573
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