Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01721 and BL01105
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_01721___yhfA.1.5803.seq
# -bsequence dna-align/BL01105___yhfA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01721___yhfA-BL01105___yhfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01721___yhfA-BL01105___yhfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01721___yhfA
# 2: BL01105___yhfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1503
# Identity: 945/1503 (62.9%)
# Similarity: 945/1503 (62.9%)
# Gaps: 240/1503 (16.0%)
# Score: 2804.0
#
#
#=======================================
BSNT_01721___ 1 ATGATGGAAGTCGGGATT---TT---GTCTGTCCATGTTCTGTATGTGTT 44
|||||| ||| || |||.||.||..||.|.|||.||..
BL01105___yhf 1 ---ATGGAA------ATTGAATTAACGTCCGTTCACTTTTTATATTTGGG 41
BSNT_01721___ 45 TTTTATCGGTGCAATTATCCTATTTATGCTGCTGAGAAAAGACACGACAT 94
.|||||.|..||.|||.||..|||||||||.||..|....||.||.||.|
BL01105___yhf 42 CTTTATTGCAGCTATTCTCGCATTTATGCTACTTCGTCTTGATACCACCT 91
BSNT_01721___ 95 TTATTTCTCTATTCGGCATTTTTATCATATCGCTATGGGCCAGCCAATCA 144
||||.||.||..||||.||||||.||||.||..||...||.|.|||.|||
BL01105___yhf 92 TTATATCGCTTGTCGGGATTTTTTTCATCTCATTAGCCGCGACCCATTCA 141
BSNT_01721___ 145 CTTTCA--GCTTCTGTCA---GCA-GTTTATTCCACAGCTTTATCTATGC 188
.||| ||.|||||.| ||| ||||| |||||||.|||||.||
BL01105___yhf 142 --GTCATGGCGTCTGTGATGGGCATGTTTA----ACAGCTTAATCTACGC 185
BSNT_01721___ 189 GGCCGGCGAACTGCTGCCCACGATTTTCATCATTTGCTTTATCGTTTCAA 238
.|||||.|||||.||.||.||.|||||||||||.|||||||.||||||.|
BL01105___yhf 186 CGCCGGGGAACTTCTTCCGACTATTTTCATCATCTGCTTTACCGTTTCGA 235
BSNT_01721___ 239 TGAGTGATTTGTTAAC----AAAAACAGGGATAAATGAAGCGATGATTTC 284
|||||||..| || |||.||.||..|.||||||||.|||.|..|
BL01105___yhf 236 TGAGTGAGCT----ACTGGTAAAGACCGGCGTCAATGAAGCAATGGTCAC 281
BSNT_01721___ 285 TCCCTTTGC--AAGCCTTG--TGAGAGGGCCTGTGACT--GCCTATTGGC 328
|||..|.|| || || |||.|||.||||| || |||||.|||.
BL01105___yhf 282 TCCGATCGCCAAA----TGGATGAAAGGCCCTGT--CTTGGCCTACTGGA 325
BSNT_01721___ 329 TGATTGGGGGCCTGATGTTCGCCATTTCTCTC-TTCTTCTGGCCTTCTCC 377
|.|..||.|...|.|||||...||||||| || ||.||.|||||.||.||
BL01105___yhf 326 TCACCGGAGCTTTAATGTTTATCATTTCT-TCATTTTTTTGGCCCTCCCC 374
BSNT_01721___ 378 GGGTGTCGCTTTGATCGGCGCCGTCCTGCTCCCCGCAGCCGCACGT---- 423
||.||||||.|||.|||||||||||||.||.||| |||||.| |
BL01105___yhf 375 GGCTGTCGCATTGGTCGGCGCCGTCCTCCTGCCC---GCCGCGC-TGAAA 420
BSNT_01721___ 424 GCCGGTTTGACGCCTCTTGCC----GCGG--CCATG-GCCATGAACTTAT 466
|||| ||||||..|| |||| .|.|| ||||||||.||||
BL01105___yhf 421 GCCG-------GCCTCTCCCCGATGGCGGTAGCGTGCGCCATGAATTTAT 463
BSNT_01721___ 467 TCGGACACGGTTTTGCCCTGTCAGGAGACTTTGTCATTCAGGCGGCGCCA 516
||||.||||||||.||..|.|||||.||.|...||||.|||||.|||||.
BL01105___yhf 464 TCGGCCACGGTTTCGCTTTATCAGGCGATTACATCATCCAGGCAGCGCCT 513
BSNT_01721___ 517 AAGCTGACTGCAGATGCAGCAGGCATTCCAGTCG-----GTGATGTCGTC 561
||..||||.|.|||||||||.||..|.||.||.| ||||||
BL01105___yhf 514 AAATTGACCGGAGATGCAGCCGGGCTGCCCGTTGCGGAAGTGATG----- 558
BSNT_01721___ 562 TCGGCCAGCATTCCGCTTGTGCTGATTATGGGTGTGACAACAACAACCGC 611
||.||.|||.|||||||.||..||||.|||||..|..|.|||||....||
BL01105___yhf 559 TCTGCAAGCGTTCCGCTCGTCTTGATCATGGGCTTTTCGACAACGGGGGC 608
BSNT_01721___ 612 TGCCTTTATCATGATTC----AGCGCGAACGCAAAAAA--------CAG- 648
.||||||.|.|||.|.| ||.| .||.||||.|.| |||
BL01105___yhf 609 AGCCTTTTTGATGCTCCGGAAAGAG-AAAGGCAATAGAGCAGCGGCCAGT 657
BSNT_01721___ 649 GAGCATC-----------CC------GCTTCTTTTTCCCCCGTTCTTTCC 681
.||||.| || ||||||| ||||
BL01105___yhf 658 AAGCAGCTGCAAAGCGAGCCTGAGTGGCTTCTT----CCCC--------- 694
BSNT_01721___ 682 GGCGAACAAGACAACTCGCTGTACTTGCCAAAACGCCT-GCGGTCCATAC 730
|||| ||| |.| ||||.|.|| ||| |
BL01105___yhf 695 --------AGAC--CTC-CAG--------AAAATGGCTCGCG-------C 718
BSNT_01721___ 731 TGGCTTTTTTGATTCCGCTTGCCTTTCTT--GCAGATATCGCCTGC-ATG 777
|| |||||||||.| |.|||.|| |.|||||||||| || |||
BL01105___yhf 719 TG------TTGATTCCGGT--CATTTTTTTAGGAGATATCGCC-GCGATG 759
BSNT_01721___ 778 CTCTTGTTTAACCTACAAGGAAATGATGCCACCGCGTTAATTGGCGGGTC 827
||..|.||..|.||.||.||..|.||.||.||.|||.|..|.||.||..|
BL01105___yhf 760 CTGATATTGGAACTGCAGGGGGACGAAGCGACGGCGCTTGTCGGAGGAAC 809
BSNT_01721___ 828 TGCAATTTGTATCCTCTTTACCGTTCATTTTTTCGTGTATAAGCATAAAG 877
.|||.|.|...||.|..||..|.||||||||.||||..|.||.||.....
BL01105___yhf 810 GGCAGTCTTCGTCATGATTCTCATTCATTTTATCGTCCACAAACACCGGC 859
BSNT_01721___ 878 GGCTTGAAAAAATCACCGGCTATTTTATTGACGGATTTAAGTTCGGTTTT 927
|.|||||.|||||||||||||||||.|||..|||||||.||||.||.|||
BL01105___yhf 860 GTCTTGAGAAAATCACCGGCTATTTCATTAGCGGATTTCAGTTTGGCTTT 909
BSNT_01721___ 928 AAGGTTTTCGGCCCCGTCATCCCGATTGCCGCTTTCTTTTATCTT-GGCG 976
||.||.||.|.|||||||||.||.||.|||||.||.||||| ||| ||||
BL01105___yhf 910 AAAGTGTTTGCCCCCGTCATTCCAATCGCCGCCTTTTTTTA-CTTGGGCG 958
BSNT_01721___ 977 ACTCAGGCTATGAAAGCATACTGGGCACTTCACTCCCTAAAGGTTCCC-- 1024
|..|.||.|.|||||...||||| ||..| |.||.|||||
BL01105___yhf 959 ATGCGGGTTTTGAAAAAGTACTG--------ACAGC--AGAGATTCCCGG 998
BSNT_01721___ 1025 --------ACGGCATTGTCAACGATCTCGGCATTGCTTTATCCCATATGA 1066
|..|.||.||..|.||.||||||...||.||..||||.|...
BL01105___yhf 999 TTTTTCTAATAGGATCGTGCAGGACCTCGGCTCGGCCTTTGCCCACAGCG 1048
BSNT_01721___ 1067 TGCCTATGTCAAAGGAGCTTGCCGCCGCTGCATTAACTGCCGCTGGAGCC 1116
|.||..|.||...|||..|.|||||.|.|||..|.||||.|.|.|||||.
BL01105___yhf 1049 TTCCGCTCTCTCCGGAAATCGCCGCTGTTGCGCTCACTGTCACAGGAGCG 1098
BSNT_01721___ 1117 ATAACAGGCCTTGACGGCTCAGGATTTTCTGGCATTTCTCTCGCCGGCTC 1166
.|.||.||.||||||||.||.||||||||.||.|||||||||||.||.||
BL01105___yhf 1099 GTGACCGGTCTTGACGGATCCGGATTTTCGGGGATTTCTCTCGCAGGATC 1148
BSNT_01721___ 1167 CATCGCAAAGCTCTTTTCGTCCGCTCTCCATG------------------ 1198
|| ||||| ||.|||
BL01105___yhf 1149 --------AG----------CCGCT-TCGATGTTTGCTGCGGCGGTTGAC 1179
BSNT_01721___ 1199 -CCGATCCCGCCGTTCTGACCGCGCTCGGACAAATCTCTGCCATCTGGGT 1247
.|.||||.|||||||||||.||||||||.||||||||.|||||.|||||
BL01105___yhf 1180 AGCAATCCAGCCGTTCTGACTGCGCTCGGCCAAATCTCAGCCATTTGGGT 1229
BSNT_01721___ 1248 GGGCGGAGGAACACTGATCCCATGGGCGTTGATTCCCGCCGCGGCCATTT 1297
.|||||.||.||.||..|.|||||||||.|.|||||.|..||.||.||||
BL01105___yhf 1230 CGGCGGCGGTACGCTTGTGCCATGGGCGCTCATTCCAGTTGCAGCGATTT 1279
BSNT_01721___ 1298 GCAAAGTTGATCCTTTTGAGCTTGCCAGAAAAAACTTCATTCCCGTCGC- 1346
||||||||||.||.||.||.|||||||||||||||||.|||||.||.||
BL01105___yhf 1280 GCAAAGTTGACCCGTTCGATCTTGCCAGAAAAAACTTTATTCCTGTAGCT 1329
BSNT_01721___ 1347 ----GATTGGCCTTTTGGTGACAACCATCGCAGCTGTGATGATGCTTTGA 1392
||||..|| ||.|||||.||.||.|| .||..|.|||..|
BL01105___yhf 1330 GCCGGATTAACC-----GTCACAACGATTGCCGC---CATTTTTCTTCTA 1371
BSNT_01721___ 1392 --- 1392
BL01105___yhf 1372 TAA 1374
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