Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01765 and BL01089

See Amino acid alignment / Visit BSNT_01765 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01765___yhxC.1.5803.seq
#    -bsequence dna-align/BL01089___yhxC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01765___yhxC-BL01089___yhxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01765___yhxC-BL01089___yhxC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01765___yhxC
# 2: BL01089___yhxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 885
# Identity:     650/885 (73.4%)
# Similarity:   650/885 (73.4%)
# Gaps:          54/885 ( 6.1%)
# Score: 2309.0
# 
#
#=======================================

BSNT_01765___      1 TTG-GCGAATCA----AAAAAAGAAAACATTACCGCCT---CAGCAACAG     42
                     ||| || ||.||    ||.||||       |||.||||   |||||.|| 
BL01089___yhx      1 TTGAGC-AAGCAGCCGAAGAAAG-------TACTGCCTCCCCAGCACCA-     41

BSNT_01765___     43 AAC-CAGCAGCCTGGTTTTGAATATCTTATGGACCCGCGTCCGGTTTTTG     91
                     ||| ||||..||.||.||.||.|||.|.|||||.||.||.||.|||||.|
BL01089___yhx     42 AACACAGCGTCCCGGATTGGAGTATTTGATGGATCCCCGGCCCGTTTTCG     91

BSNT_01765___     92 ATAAGCCGAA--GAAAGCGAAAAAATTAGAGGGCAAAACCGCTATTATTA    139
                     |...||||||  ||.||||  ||||.|.|..||.||||||||.|||||||
BL01089___yhx     92 ACCGGCCGAAACGAGAGCG--AAAACTGGCTGGGAAAACCGCGATTATTA    139

BSNT_01765___    140 CTGGAGGAGACAGCGGGATTGGACGCGCTGTCTCGGTGTTATTCGCAAAA    189
                     |.||||||||||||||.||.||.||.||.||.||.||.||.||.||.||.
BL01089___yhx    140 CGGGAGGAGACAGCGGAATCGGCCGTGCCGTGTCCGTTTTGTTTGCGAAG    189

BSNT_01765___    190 GAAGGGGCTAATGTGGTCATTGTTTATTTGAATGAACATCAGGACGCCGA    239
                     |||||.||.||.||.|||||.|||||.||.||||||||.|..||.||.||
BL01089___yhx    190 GAAGGCGCGAACGTTGTCATCGTTTACTTAAATGAACACCGCGATGCAGA    239

BSNT_01765___    240 GGAAACAAAGCAGTATGTAGAAAAGGAAGGGGTAAAATGCCTGCTGATTG    289
                     .|||||||||..||||||.|||||.|||||.||...||||..||||||||
BL01089___yhx    240 AGAAACAAAGGGGTATGTGGAAAAAGAAGGCGTCGGATGCAAGCTGATTG    289

BSNT_01765___    290 CAGGAGATGTCGGGGATGAAGCGTTTTGCAATGATGTGGT----CGGGCA    335
                     ||||.||..|||||||.||.||.||||||||.||||||||    ||||||
BL01089___yhx    290 CAGGGGACATCGGGGACGAGGCTTTTTGCAACGATGTGGTGCGCCGGGCA    339

BSNT_01765___    336 GGCAAGCCAAGTGTTTCCATCCATTGATATATTGGTTAACAATGCAGCTG    385
                        ||| .|||..||.|||.|.||.|||||..|.||.||.|||||.||||
BL01089___yhx    340 ---AAG-GAAGCATTCCCAACGATCGATATTCTCGTCAATAATGCGGCTG    385

BSNT_01765___    386 AGCAGCATGTCCAGCCCA---GCATTGAAAAAATCACCAGCCACCAGCTG    432
                     |.||||||   |.||..|   |.||.|||||||||||.|||||.||||||
BL01089___yhx    386 AACAGCAT---CCGCAAAAGGGAATCGAAAAAATCACGAGCCATCAGCTG    432

BSNT_01765___    433 ATCAGAACCTTCCAAACAAACATTTTTTCTATGTTTTACTTAACAAAGGC    482
                     |||.||||.||.||.||.||.||||||||.||||||||.||.|||||.||
BL01089___yhx    433 ATCCGAACGTTTCAGACGAATATTTTTTCCATGTTTTATTTGACAAAAGC    482

BSNT_01765___    483 AGTGCTGCCTCATTTAAAAAAAGGGAGCTCTATTATTAATACCGCTTCAA    532
                     .||||||||.|||||.||||||||.|||||.||.||.|||||..|.||.|
BL01089___yhx    483 TGTGCTGCCGCATTTGAAAAAAGGCAGCTCAATCATCAATACGACCTCGA    532

BSNT_01765___    533 TTACCGCCTATAAAGGCAATAAAACGCTGATCGATTATTCAGCGACAAAA    582
                     ||||.||.|||...||||||.|||.|||||||||||||||..||||.|||
BL01089___yhx    533 TTACGGCTTATGCCGGCAATGAAAGGCTGATCGATTATTCTTCGACGAAA    582

BSNT_01765___    583 GGCGCGATCGTTA---CGTTTAC----AAGGTCCCTTTCCCAGTCGCTTG    625
                     ||.||||   |||   |.|||||    ..|.||.||||    ||||||||
BL01089___yhx    583 GGAGCGA---TTACATCATTTACGCGTTCGCTCGCTTT----GTCGCTTG    625

BSNT_01765___    626 TTCAGCAGGGCATACGGGTCAATGCAGTGGCACCGGGTCCCATTTGGACA    675
                     |..|.||||||||.||.||.||.|..|||||||||||.||.||||||||.
BL01089___yhx    626 TCGATCAGGGCATTCGTGTGAACGGTGTGGCACCGGGGCCGATTTGGACG    675

BSNT_01765___    676 CCGCTTATCCCGGCCAGCTTTGCCGCAAAAGACGTGGAAGTGTTTGGTTC    725
                     ||||||||.|||.|.|..|||.|.|..|.|||.||.|||.|.||.|||||
BL01089___yhx    676 CCGCTTATACCGTCGACGTTTACTGAGAGAGAGGTCGAAATATTCGGTTC    725

BSNT_01765___    726 A--GACGTGCCGATGGAACGCCCGGGACAGCCGGTCGAAGTGGCGCCAAG    773
                     |  .||  ||||||||||||.|||||||||||.|..|||||||||||.||
BL01089___yhx    726 AACAAC--GCCGATGGAACGGCCGGGACAGCCTGCTGAAGTGGCGCCGAG    773

BSNT_01765___    774 CTATCTATACCTTGCCAGCGACGATTCCACATACGTCACAGGGCAGACGA    823
                     ||||||.|..||.||||||||||||||..|.|||.|.||.||.|||..|.
BL01089___yhx    774 CTATCTGTTTCTAGCCAGCGACGATTCTTCCTACATGACGGGCCAGGTGC    823

BSNT_01765___    824 TTCACGTCAATGGCGGAACAATTGTGAACGGATAA    858
                     |.||.|||||.||||||||.|||.|.|||||||||
BL01089___yhx    824 TCCATGTCAACGGCGGAACGATTATTAACGGATAA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01765 and BL01089

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
