Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01743 and BL01080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01743___yhfL.1.5803.seq
# -bsequence dna-align/BL01080___yhfL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01743___yhfL-BL01080___yhfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01743___yhfL-BL01080___yhfL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01743___yhfL
# 2: BL01080___yhfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1654
# Identity: 1102/1654 (66.6%)
# Similarity: 1102/1654 (66.6%)
# Gaps: 176/1654 (10.6%)
# Score: 3594.0
#
#
#=======================================
BSNT_01743___ 1 TTGGCTTCAATAATGAATGACTATTCATTCACTTTAAGGGGTGGGAGAAT 50
||
BL01080___yhf 1 ------------------------------------------------AT 2
BSNT_01743___ 51 GAATCTTGTTTCAAAATTGGAAGAAACAGC---ATCTGAGAAGCCCGACA 97
||||.|.|||||||||||.|..|||||||| ||| .|||||.||||
BL01080___yhf 3 GAATTTAGTTTCAAAATTAGGGGAAACAGCTCAATC---AAAGCCTGACA 49
BSNT_01743___ 98 GCATCGCATGCAGGTTTAAAGATC--------ACAT------GATGACGT 133
|.|.|||.|..|..|||..|||.| |||| |||..|
BL01080___yhf 50 GAACCGCTTATATTTTTGGAGAGCAAACGGAAACATACGGGGGATTGC-- 97
BSNT_01743___ 134 ATCAAGAGCTGAATGAATATATTCAGCGATTTGCGGACGGCCTTCAGGAG 183
|||.||| |||..||| |.|||||.||.||.||.|..||.
BL01080___yhf 98 ------AGCAGAA--AATTGATT----GCTTTGCCGAAGGGCTGCGCGAA 135
BSNT_01743___ 184 GCCGGTATGGAGAAAGGG-GACCATCTAGCTTTGCTGCTTGGCAATTCGC 232
..|||..|||| |||||| ||.|||.|.||||||||.||.||||||.|.|
BL01080___yhf 136 ATCGGGGTGGA-AAAGGGAGATCATGTCGCTTTGCTACTCGGCAATACAC 184
BSNT_01743___ 233 CTGATTTTATCATCGCGTTTTTTGGCGCTTTAAAAGCTGGGATCGTGGTT 282
|..|||||.|.||.|||||||..|||||..|.||.||.|||...||.||.
BL01080___yhf 185 CGCATTTTGTGATTGCGTTTTACGGCGCGCTGAAGGCCGGGGCTGTCGTC 234
BSNT_01743___ 283 GTTCCCATCAATCCGTTGTACACGCCGACAGAAATTGGTTATATGCTGAC 332
.|.||.|||||||||...||.||||||||.||.||.||.|||||||||||
BL01080___yhf 235 ATACCGATCAATCCGGCCTATACGCCGACTGAGATCGGCTATATGCTGAC 284
BSNT_01743___ 333 AAATGGCGATGTAAAGGCGATCGTGGGCGTTAGCCAGCTTTTGCCGCTTT 382
|||||||||||.|||.|.||||||||...|..|.|||||..|.|||||||
BL01080___yhf 285 AAATGGCGATGCAAAAGTGATCGTGGCTCTGGGACAGCTGCTTCCGCTTT 334
BSNT_01743___ 383 ATGAGAGCATGCATGAATCGCTGCCAAAGGTTGAGCT-CGTCATTTTATG 431
|.||.|...||||||||||.||.||.||.||.| ||| ||||.|..|.||
BL01080___yhf 335 ACGAAAAGGTGCATGAATCCCTTCCGAAAGTCG-GCTGCGTCGTGCTTTG 383
BSNT_01743___ 432 CCAGACGGGGGAGGCAGAGCC------GGAAGCTGCGGACCCAGAGGTCA 475
|.|.||.|| |||||| ||||.|.|...||.|||||||.|
BL01080___yhf 384 CGAAACTGG------AGAGCCGCTTCAGGAACCGGAAAACACAGAGGTTA 427
BSNT_01743___ 476 GGATGAAAATGACAACGTTTGCAAAAATATTG------------CGGCCG 513
.|||||||.|||.|.|||||.|||..||..|| ||||||
BL01080___yhf 428 AGATGAAATTGAAATCGTTTACAAGCATTATGAAACCTCCTGTCCGGCCG 477
BSNT_01743___ 514 ACATCTGCTGCTAAACAAAACCAAGAACTTGTCCCTGATGATACCGCGGT 563
|.|.||| |||.|.|.|| .||.|||||.||.|.
BL01080___yhf 478 ---TTTCCTG------AAATCGATGA---------CGAAGATACGGCCGC 509
BSNT_01743___ 564 TATTTTATATACGTCAGGAACGACTGGAAAACCGAAAGGCGCAATGCTGA 613
.||..|.|||||||||||.||.||.||||.|||.|||||.||.|||||.|
BL01080___yhf 510 CATCCTCTATACGTCAGGCACCACGGGAAGACCAAAAGGGGCGATGCTCA 559
BSNT_01743___ 614 CTCATCAGAAT---TTGTACAGC-AATGCCAACGATGTCGCAGGCTATTT 659
|.|||||.||| ||.| | |||||.||.|||...||..|||||.|
BL01080___yhf 560 CACATCAAAATCTATTTT----CGAATGCAAATGATACAGCCCGCTATCT 605
BSNT_01743___ 660 GGGAATGGATGAGAGGGACAATGTGGTCTGCGCTCTTCCCATGTTTCACG 709
|..||||.||||....|||..|||.|||..|||.||.||.|||||.||||
BL01080___yhf 606 GACAATGAATGAATCTGACCTTGTCGTCGCCGCCCTGCCGATGTTCCACG 655
BSNT_01743___ 710 TGTTTTGTTTAACCGTCTGTATGAATGCACCGCTGATGAGCGGCGCAACT 759
|.|||||||||||.|||||.||||||||||||||.||||.|||||||.|.
BL01080___yhf 656 TTTTTTGTTTAACGGTCTGCATGAATGCACCGCTCATGAACGGCGCAGCG 705
BSNT_01743___ 760 GTCTTGATTGAGCCTCAATTCAGTCCGGCATCTGTTTTTAAGCTTGTTAG 809
.|.|||||.|.|||..||||||||||.||....|||||.|||||..|||.
BL01080___yhf 706 ATTTTGATCGTGCCGAAATTCAGTCCCGCCGAGGTTTTCAAGCTGATTAA 755
BSNT_01743___ 810 GCAGCAGCAGGCGACCATTTTTGCCGGTGTGCCTACAATGTATAACTACT 859
..||||.||||||||.||.||..|.||.||.||.||||||||.||.|||.
BL01080___yhf 756 AAAGCATCAGGCGACGATCTTCTCAGGCGTTCCGACAATGTACAATTACC 805
BSNT_01743___ 860 TGTTTCAGCATGAA--AACGGAAAGAAAGATGATTTTTC-TTCGATCCGG 906
|||..|||.||||| |.||| |.||||.|.| .|||| .||.|||.||
BL01080___yhf 806 TGTACCAGTATGAAGGAGCGG-ATGAAACAGG--CTTTCGGTCCATCAGG 852
BSNT_01743___ 907 CTGTGCATTTCGGGAGGCGCGGCCATGCCAGTCGCGTTGCTG-ACGGCGT 955
||.|||||.||.||.||.|||||||||||.|||||..|.||| |..|| |
BL01080___yhf 853 CTTTGCATCTCAGGCGGAGCGGCCATGCCTGTCGCTCTCCTGAAAAGC-T 901
BSNT_01743___ 956 TTGAAGAAAAATTCGGTGTTACCATTTTGGAAGGCTACGGGCTCTCGGAA 1005
|||||||||..|||||.||...|.||||.|||||||||||..|.|||||.
BL01080___yhf 902 TTGAAGAAAGGTTCGGCGTCCTCGTTTTAGAAGGCTACGGCTTGTCGGAG 951
BSNT_01743___ 1006 GCATCACCCGTCACGTGCTTTAACCCGTTTGACAGGGGCAGGAAGCCGGG 1055
||.||.||.||.||.||||||||||||||...||..|||.|.|||||.||
BL01080___yhf 952 GCTTCTCCTGTTACATGCTTTAACCCGTTCAGCACCGGCCGCAAGCCAGG 1001
BSNT_01743___ 1056 CTCCATCGGGAC-AAGTATCTTACATGTCGAAAACAAGGTCGTAGATCCG 1104
.||.|||||.|| ||...|||.| ||||..|||||||.|||||..||...
BL01080___yhf 1002 ATCGATCGGCACGAACATTCTCA-ATGTGAAAAACAAAGTCGTCAATGAA 1050
BSNT_01743___ 1105 CTCGGACGCGAGCTGCCCGCTCACCAGGTCGGCGAATTGATCGTGAAAGG 1154
|||||....||||||||.||...|||.||||||||..|||||||.|||||
BL01080___yhf 1051 CTCGGGGAAGAGCTGCCTGCCGGCCAAGTCGGCGAGCTGATCGTTAAAGG 1100
BSNT_01743___ 1155 CCCCAATGTGATGAAGGGCTATTATAAAATGCC-GATGGAAACAGAGCAT 1203
.||.|||||.|||||.||.||.||.|||||||| ||| ||.||.|..|||
BL01080___yhf 1101 GCCTAATGTCATGAAAGGGTACTACAAAATGCCGGAT-GAGACGGCCCAT 1149
BSNT_01743___ 1204 GCATTAAAAGACGGGTGGCTTTATACGGGGGACTTGGCAAGACGGGATGA 1253
.|..||||||||||.|||||.|||||.||.||.|||||||.|||||||||
BL01080___yhf 1150 ACGATAAAAGACGGATGGCTGTATACAGGTGATTTGGCAAAACGGGATGA 1199
BSNT_01743___ 1254 GGACGGCTATTTTTACATTGTTGACCGGAAAAAAGACATGATCATTGTAG 1303
.|||||.||||||||.||.||.|||.|.||||||||.|||||.||.||.|
BL01080___yhf 1200 AGACGGTTATTTTTATATCGTCGACAGAAAAAAAGATATGATTATCGTCG 1249
BSNT_01743___ 1304 GAGGATACAATGTGTATCCGCGGGAGGTGGAGGAGGTGCTGTACAGCCAT 1353
|.||.||.|||||.||||||.||||..|.||.||||||||.|||..||||
BL01080___yhf 1250 GCGGCTATAATGTCTATCCGAGGGAAATCGAAGAGGTGCTCTACCTCCAT 1299
BSNT_01743___ 1354 CCGGACGTCAAGGAGGCGGTTGTCATCGGCGTGCCGGACCCCCAAAGCGG 1403
||..|..||...||.||||||||.|||||.|||||.|| .||.||..|||
BL01080___yhf 1300 CCAAAAATCGCAGAAGCGGTTGTGATCGGAGTGCCCGA-TCCGAATACGG 1348
BSNT_01743___ 1404 G-GAAGCGGTAAAGGGATATGTGGTGCCG-------AAACGCTCTGGGGT 1445
| |||||.||..|..|.|||||.||.||| |||||| |
BL01080___yhf 1349 GAGAAGCCGTTCATTGCTATGTCGTTCCGAAGGATAAAACGC-------T 1391
BSNT_01743___ 1446 AACAGAGGAGGACATCATGCAGCACTGTGAAAAGCATCTGGCAAAATACA 1495
.|||||||||||..||.||..||||||..||||||||||.||.|||||||
BL01080___yhf 1392 GACAGAGGAGGATGTCTTGTCGCACTGCAAAAAGCATCTTGCCAAATACA 1441
BSNT_01743___ 1496 AGCGGCCTGCCGCCATTACGTTT--CTTGACGATATTCCGAAAAATGCGA 1543
||||.||..|.||.|| ||||| .|.||.||.|||||||||||..|||
BL01080___yhf 1442 AGCGCCCGTCGGCGAT--CGTTTTCATGGATGAAATTCCGAAAAACTCGA 1489
BSNT_01743___ 1544 CGGGGAAAATGCTCAGACGGGCACTGAGAGATATTTTGCCCCAATAA--- 1590
|.||.|||||..|.||.||.||..|.|.|||.|||.|| .|.||.||
BL01080___yhf 1490 CCGGCAAAATTTTAAGGCGCGCTTTAAAAGACATTCTG-ACAAACAAATC 1538
BSNT_01743___ 1590 ---- 1590
BL01080___yhf 1539 TTGA 1542
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