Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01743 and BL01080

See Amino acid alignment / Visit BSNT_01743 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_01743___yhfL.1.5803.seq
#    -bsequence dna-align/BL01080___yhfL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01743___yhfL-BL01080___yhfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01743___yhfL-BL01080___yhfL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01743___yhfL
# 2: BL01080___yhfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1654
# Identity:    1102/1654 (66.6%)
# Similarity:  1102/1654 (66.6%)
# Gaps:         176/1654 (10.6%)
# Score: 3594.0
# 
#
#=======================================

BSNT_01743___      1 TTGGCTTCAATAATGAATGACTATTCATTCACTTTAAGGGGTGGGAGAAT     50
                                                                     ||
BL01080___yhf      1 ------------------------------------------------AT      2

BSNT_01743___     51 GAATCTTGTTTCAAAATTGGAAGAAACAGC---ATCTGAGAAGCCCGACA     97
                     ||||.|.|||||||||||.|..||||||||   |||   .|||||.||||
BL01080___yhf      3 GAATTTAGTTTCAAAATTAGGGGAAACAGCTCAATC---AAAGCCTGACA     49

BSNT_01743___     98 GCATCGCATGCAGGTTTAAAGATC--------ACAT------GATGACGT    133
                     |.|.|||.|..|..|||..|||.|        ||||      |||..|  
BL01080___yhf     50 GAACCGCTTATATTTTTGGAGAGCAAACGGAAACATACGGGGGATTGC--     97

BSNT_01743___    134 ATCAAGAGCTGAATGAATATATTCAGCGATTTGCGGACGGCCTTCAGGAG    183
                           |||.|||  |||..|||    |.|||||.||.||.||.|..||.
BL01080___yhf     98 ------AGCAGAA--AATTGATT----GCTTTGCCGAAGGGCTGCGCGAA    135

BSNT_01743___    184 GCCGGTATGGAGAAAGGG-GACCATCTAGCTTTGCTGCTTGGCAATTCGC    232
                     ..|||..|||| |||||| ||.|||.|.||||||||.||.||||||.|.|
BL01080___yhf    136 ATCGGGGTGGA-AAAGGGAGATCATGTCGCTTTGCTACTCGGCAATACAC    184

BSNT_01743___    233 CTGATTTTATCATCGCGTTTTTTGGCGCTTTAAAAGCTGGGATCGTGGTT    282
                     |..|||||.|.||.|||||||..|||||..|.||.||.|||...||.||.
BL01080___yhf    185 CGCATTTTGTGATTGCGTTTTACGGCGCGCTGAAGGCCGGGGCTGTCGTC    234

BSNT_01743___    283 GTTCCCATCAATCCGTTGTACACGCCGACAGAAATTGGTTATATGCTGAC    332
                     .|.||.|||||||||...||.||||||||.||.||.||.|||||||||||
BL01080___yhf    235 ATACCGATCAATCCGGCCTATACGCCGACTGAGATCGGCTATATGCTGAC    284

BSNT_01743___    333 AAATGGCGATGTAAAGGCGATCGTGGGCGTTAGCCAGCTTTTGCCGCTTT    382
                     |||||||||||.|||.|.||||||||...|..|.|||||..|.|||||||
BL01080___yhf    285 AAATGGCGATGCAAAAGTGATCGTGGCTCTGGGACAGCTGCTTCCGCTTT    334

BSNT_01743___    383 ATGAGAGCATGCATGAATCGCTGCCAAAGGTTGAGCT-CGTCATTTTATG    431
                     |.||.|...||||||||||.||.||.||.||.| ||| ||||.|..|.||
BL01080___yhf    335 ACGAAAAGGTGCATGAATCCCTTCCGAAAGTCG-GCTGCGTCGTGCTTTG    383

BSNT_01743___    432 CCAGACGGGGGAGGCAGAGCC------GGAAGCTGCGGACCCAGAGGTCA    475
                     |.|.||.||      ||||||      ||||.|.|...||.|||||||.|
BL01080___yhf    384 CGAAACTGG------AGAGCCGCTTCAGGAACCGGAAAACACAGAGGTTA    427

BSNT_01743___    476 GGATGAAAATGACAACGTTTGCAAAAATATTG------------CGGCCG    513
                     .|||||||.|||.|.|||||.|||..||..||            ||||||
BL01080___yhf    428 AGATGAAATTGAAATCGTTTACAAGCATTATGAAACCTCCTGTCCGGCCG    477

BSNT_01743___    514 ACATCTGCTGCTAAACAAAACCAAGAACTTGTCCCTGATGATACCGCGGT    563
                        |.|.|||      |||.|.|.||         .||.|||||.||.|.
BL01080___yhf    478 ---TTTCCTG------AAATCGATGA---------CGAAGATACGGCCGC    509

BSNT_01743___    564 TATTTTATATACGTCAGGAACGACTGGAAAACCGAAAGGCGCAATGCTGA    613
                     .||..|.|||||||||||.||.||.||||.|||.|||||.||.|||||.|
BL01080___yhf    510 CATCCTCTATACGTCAGGCACCACGGGAAGACCAAAAGGGGCGATGCTCA    559

BSNT_01743___    614 CTCATCAGAAT---TTGTACAGC-AATGCCAACGATGTCGCAGGCTATTT    659
                     |.|||||.|||   ||.|    | |||||.||.|||...||..|||||.|
BL01080___yhf    560 CACATCAAAATCTATTTT----CGAATGCAAATGATACAGCCCGCTATCT    605

BSNT_01743___    660 GGGAATGGATGAGAGGGACAATGTGGTCTGCGCTCTTCCCATGTTTCACG    709
                     |..||||.||||....|||..|||.|||..|||.||.||.|||||.||||
BL01080___yhf    606 GACAATGAATGAATCTGACCTTGTCGTCGCCGCCCTGCCGATGTTCCACG    655

BSNT_01743___    710 TGTTTTGTTTAACCGTCTGTATGAATGCACCGCTGATGAGCGGCGCAACT    759
                     |.|||||||||||.|||||.||||||||||||||.||||.|||||||.|.
BL01080___yhf    656 TTTTTTGTTTAACGGTCTGCATGAATGCACCGCTCATGAACGGCGCAGCG    705

BSNT_01743___    760 GTCTTGATTGAGCCTCAATTCAGTCCGGCATCTGTTTTTAAGCTTGTTAG    809
                     .|.|||||.|.|||..||||||||||.||....|||||.|||||..|||.
BL01080___yhf    706 ATTTTGATCGTGCCGAAATTCAGTCCCGCCGAGGTTTTCAAGCTGATTAA    755

BSNT_01743___    810 GCAGCAGCAGGCGACCATTTTTGCCGGTGTGCCTACAATGTATAACTACT    859
                     ..||||.||||||||.||.||..|.||.||.||.||||||||.||.|||.
BL01080___yhf    756 AAAGCATCAGGCGACGATCTTCTCAGGCGTTCCGACAATGTACAATTACC    805

BSNT_01743___    860 TGTTTCAGCATGAA--AACGGAAAGAAAGATGATTTTTC-TTCGATCCGG    906
                     |||..|||.|||||  |.||| |.||||.|.|  .|||| .||.|||.||
BL01080___yhf    806 TGTACCAGTATGAAGGAGCGG-ATGAAACAGG--CTTTCGGTCCATCAGG    852

BSNT_01743___    907 CTGTGCATTTCGGGAGGCGCGGCCATGCCAGTCGCGTTGCTG-ACGGCGT    955
                     ||.|||||.||.||.||.|||||||||||.|||||..|.||| |..|| |
BL01080___yhf    853 CTTTGCATCTCAGGCGGAGCGGCCATGCCTGTCGCTCTCCTGAAAAGC-T    901

BSNT_01743___    956 TTGAAGAAAAATTCGGTGTTACCATTTTGGAAGGCTACGGGCTCTCGGAA   1005
                     |||||||||..|||||.||...|.||||.|||||||||||..|.|||||.
BL01080___yhf    902 TTGAAGAAAGGTTCGGCGTCCTCGTTTTAGAAGGCTACGGCTTGTCGGAG    951

BSNT_01743___   1006 GCATCACCCGTCACGTGCTTTAACCCGTTTGACAGGGGCAGGAAGCCGGG   1055
                     ||.||.||.||.||.||||||||||||||...||..|||.|.|||||.||
BL01080___yhf    952 GCTTCTCCTGTTACATGCTTTAACCCGTTCAGCACCGGCCGCAAGCCAGG   1001

BSNT_01743___   1056 CTCCATCGGGAC-AAGTATCTTACATGTCGAAAACAAGGTCGTAGATCCG   1104
                     .||.|||||.|| ||...|||.| ||||..|||||||.|||||..||...
BL01080___yhf   1002 ATCGATCGGCACGAACATTCTCA-ATGTGAAAAACAAAGTCGTCAATGAA   1050

BSNT_01743___   1105 CTCGGACGCGAGCTGCCCGCTCACCAGGTCGGCGAATTGATCGTGAAAGG   1154
                     |||||....||||||||.||...|||.||||||||..|||||||.|||||
BL01080___yhf   1051 CTCGGGGAAGAGCTGCCTGCCGGCCAAGTCGGCGAGCTGATCGTTAAAGG   1100

BSNT_01743___   1155 CCCCAATGTGATGAAGGGCTATTATAAAATGCC-GATGGAAACAGAGCAT   1203
                     .||.|||||.|||||.||.||.||.|||||||| ||| ||.||.|..|||
BL01080___yhf   1101 GCCTAATGTCATGAAAGGGTACTACAAAATGCCGGAT-GAGACGGCCCAT   1149

BSNT_01743___   1204 GCATTAAAAGACGGGTGGCTTTATACGGGGGACTTGGCAAGACGGGATGA   1253
                     .|..||||||||||.|||||.|||||.||.||.|||||||.|||||||||
BL01080___yhf   1150 ACGATAAAAGACGGATGGCTGTATACAGGTGATTTGGCAAAACGGGATGA   1199

BSNT_01743___   1254 GGACGGCTATTTTTACATTGTTGACCGGAAAAAAGACATGATCATTGTAG   1303
                     .|||||.||||||||.||.||.|||.|.||||||||.|||||.||.||.|
BL01080___yhf   1200 AGACGGTTATTTTTATATCGTCGACAGAAAAAAAGATATGATTATCGTCG   1249

BSNT_01743___   1304 GAGGATACAATGTGTATCCGCGGGAGGTGGAGGAGGTGCTGTACAGCCAT   1353
                     |.||.||.|||||.||||||.||||..|.||.||||||||.|||..||||
BL01080___yhf   1250 GCGGCTATAATGTCTATCCGAGGGAAATCGAAGAGGTGCTCTACCTCCAT   1299

BSNT_01743___   1354 CCGGACGTCAAGGAGGCGGTTGTCATCGGCGTGCCGGACCCCCAAAGCGG   1403
                     ||..|..||...||.||||||||.|||||.|||||.|| .||.||..|||
BL01080___yhf   1300 CCAAAAATCGCAGAAGCGGTTGTGATCGGAGTGCCCGA-TCCGAATACGG   1348

BSNT_01743___   1404 G-GAAGCGGTAAAGGGATATGTGGTGCCG-------AAACGCTCTGGGGT   1445
                     | |||||.||..|..|.|||||.||.|||       ||||||       |
BL01080___yhf   1349 GAGAAGCCGTTCATTGCTATGTCGTTCCGAAGGATAAAACGC-------T   1391

BSNT_01743___   1446 AACAGAGGAGGACATCATGCAGCACTGTGAAAAGCATCTGGCAAAATACA   1495
                     .|||||||||||..||.||..||||||..||||||||||.||.|||||||
BL01080___yhf   1392 GACAGAGGAGGATGTCTTGTCGCACTGCAAAAAGCATCTTGCCAAATACA   1441

BSNT_01743___   1496 AGCGGCCTGCCGCCATTACGTTT--CTTGACGATATTCCGAAAAATGCGA   1543
                     ||||.||..|.||.||  |||||  .|.||.||.|||||||||||..|||
BL01080___yhf   1442 AGCGCCCGTCGGCGAT--CGTTTTCATGGATGAAATTCCGAAAAACTCGA   1489

BSNT_01743___   1544 CGGGGAAAATGCTCAGACGGGCACTGAGAGATATTTTGCCCCAATAA---   1590
                     |.||.|||||..|.||.||.||..|.|.|||.|||.|| .|.||.||   
BL01080___yhf   1490 CCGGCAAAATTTTAAGGCGCGCTTTAAAAGACATTCTG-ACAAACAAATC   1538

BSNT_01743___   1590 ----   1590
                         
BL01080___yhf   1539 TTGA   1542


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