Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01729 and BL01075
See
Amino acid alignment /
Visit
BSNT_01729 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01729___yhgD.1.5803.seq
# -bsequence dna-align/BL01075___yhgD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01729___yhgD-BL01075___yhgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01729___yhgD-BL01075___yhgD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01729___yhgD
# 2: BL01075___yhgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 601
# Identity: 410/601 (68.2%)
# Similarity: 410/601 (68.2%)
# Gaps: 53/601 ( 8.8%)
# Score: 1334.0
#
#
#=======================================
BSNT_01729___ 1 ATGT---CAATAGATCGAAAAAAGCTCATTTTGGAGGCGGCTACAAAGTC 47
|| ||| ||||||||||...||.|||||.||.|||||.|||||.||
BL01075___yhg 1 --GTGAGCAA-AGATCGAAAAGCACTGATTTTAGAAGCGGCGACAAAATC 47
BSNT_01729___ 48 TTTCACGCAGTTCGGGTATAAAGCGACGACAATGGATCTTGTCGCAAAAC 97
.||.||.||.|||||.||.|||||||||||.||||||||.||.||.||.|
BL01075___yhg 48 GTTTACACAATTCGGCTACAAAGCGACGACGATGGATCTGGTGGCGAAGC 97
BSNT_01729___ 98 TTGCGAACGTGGGGAAGGGAACCATTTATACTTTTTTCAAAAACAAAGAA 147
||||.||.||.||.|||||.||.||.|||||.||||||||.||.|||||.
BL01075___yhg 98 TTGCCAATGTCGGCAAGGGTACGATCTATACCTTTTTCAAGAATAAAGAG 147
BSNT_01729___ 148 GAGCTGTTTGACGAGATT-----TTCACTACTTTATTAAAGGAAATGAAG 192
||.|||||.||.||.||| |||.||.| |.||| |||||||||
BL01075___yhg 148 GAACTGTTCGATGACATTTTTTCTTCGCTTC-TGATT----GAAATGAAG 192
BSNT_01729___ 193 CAAAAAGCGGATGAAGCGATGGAGCCGAACCTTCCGTTCCATGAAAATGT 242
||||..||.|||.|||||||.||.||..|.||.||.||.||.|||||||.
BL01075___yhg 193 CAAACGGCTGATCAAGCGATTGACCCTGATCTGCCTTTTCACGAAAATGC 242
BSNT_01729___ 243 GCACAGAGCGCTGTTTGCCATTCTGGAGTTCAGGAAAACACATCAGCTGA 292
.||..|.|||.||.|.||.||..||||||.|||.||.|..||.|||||||
BL01075___yhg 243 CCATCGCGCGATGATGGCGATATTGGAGTACAGAAAGAGGCACCAGCTGA 292
BSNT_01729___ 293 CGATTAAAATTTTCCAAGAGAATGCCGAGATTGGTACAATGGCAGTTCAG 342
|.|||||.||.||.||.||....||.|||.|.||.|||..|||.|..|..
BL01075___yhg 293 CCATTAAGATCTTTCAGGAAGGCGCGGAGCTCGGCACACCGGCGGCCCGC 342
BSNT_01729___ 343 GAAGTGATCCAGAAAA--TGGAGCGAGCCATACTGTC-----TTATATCA 385
||.||||| .||||| ||||.|| ||| .||| .|||||.|
BL01075___yhg 343 GAGGTGAT--TGAAAAGCTGGAACG---CAT--GGTCATCGGCTATATTA 385
BSNT_01729___ 386 AAAGTAAGATTGAAGACGGGATCAAAAGCGGCGCAATCAAGCCGTGCGAC 435
|.||.||.|||.||||.|..||.||||..|.||..||.|..|||||.|||
BL01075___yhg 386 AGAGAAAAATTAAAGAAGCAATTAAAAATGACGATATTAGACCGTGTGAC 435
BSNT_01729___ 436 CCTGAACTGACAGCCTTTGTGATGCTGAAGCTTTATATCGCGCTCATTTT 485
||.||.||||..||.|||||.||..|.||||||||.|||||||||||.||
BL01075___yhg 436 CCAGAGCTGAACGCGTTTGTCATCTTCAAGCTTTACATCGCGCTCATCTT 485
BSNT_01729___ 486 TGACTGGGAAAAACAACACCCCCCGCT---TGATAAAGAGACAATTG--C 530
|||||||||||||.|.||....||||| .|||.||||| ||| .
BL01075___yhg 486 TGACTGGGAAAAAAACCATGAACCGCTGAAAGATGAAGAG----TTGGCA 531
BSNT_01729___ 531 GGGACTGCTTGAATTGTATGTTGTCAAAGGATT-----GTCAGCGAACTA 575
|.|| ||||..||.|||||.||.|.|||||||| ||.||
BL01075___yhg 532 GAGA-TGCTGAAAATGTATATTTTAAAAGGATTATCTCGTTAG------- 573
BSNT_01729___ 576 G 576
BL01075___yhg 573 - 573
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.