Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05355 and BL01065
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_05355___yvkC.1.5803.seq
# -bsequence dna-align/BL01065.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05355___yvkC-BL01065.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05355___yvkC-BL01065.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05355___yvkC
# 2: BL01065
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3176
# Identity: 1464/3176 (46.1%)
# Similarity: 1464/3176 (46.1%)
# Gaps: 1234/3176 (38.9%)
# Score: 2622.5
#
#
#=======================================
BSNT_05355___ 1 ----------ATGTATTCTGTTTTATTTCGCCAGGCAGAAGAGTCCAGCC 40
|||||||..|.||| ||..||| ||.|.|.
BL01065 1 ATGGGACACTATGTATTGGGCTTT-----------CATGAGA-TCGATCG 38
BSNT_05355___ 41 AGCTG-------GCT----GGAGCAAAAGGAATGAATTTGATTAAATTGA 79
|.|.| ||| ||||.||||||..||||.|||....|||||.
BL01065 39 AACCGATTTGCCGCTTATCGGAGGAAAAGGGCTGAACTTGGGCGAATTGT 88
BSNT_05355___ 80 CCAAA---CACGGTCTTCC-TGTTCCGGACGGGTTTATTAT--------- 116
|.||| .|||| |.||| .||.||...|||.|||..|||
BL01065 89 CAAAAATGGACGG-CATCCAAGTGCCTCCCGGTTTTTGTATAACAACAAA 137
BSNT_05355___ 117 -----------------TC-----AAACGA-------------------- 124
|| ||||||
BL01065 138 AGCATATGAAAAGATGATCGGTGAAAACGATAAGGTCAGTGAACAGATTG 187
BSNT_05355___ 125 ATGCGCTCGCACGTTTTA----TGGAGGAC---AACCAG----------- 156
||..|||..|.| ||||| ||.||||| ||.|||
BL01065 188 ATCAGCTGTCTC-TTTTAAAAGTGAAGGACAGAAAACAGATTAACGATCT 236
BSNT_05355___ 157 ----CTTCAAGAGAC-------TAGTGAAAACGTCGAAAGCGGGATCATT 195
|||| |||..| ||.|||||..|.|||||.||
BL01065 237 TGCCCTTC-AGATCCGCAATGGTATTGAAAGGGCCGAAATCG-------- 277
BSNT_05355___ 196 TCTGGAACATTTTCGGATGAGCTGAAAGATGAGCTGACTAGTTCCTTTTA 245
|.||.|||.|.||||| |||.| |||
BL01065 278 -------------CCGAAGAGATCAAAGA--AGCGG-----------TTA 301
BSNT_05355___ 246 TAAGCTTAGAG---AATCATAT--------CGATCCGTAGCCGTGCGTTC 284
.|||| | |.|||.|| ||||.|.|| ||||.||
BL01065 302 AAAGC-----GCTCACTCAAATGCTGGCGGCGATGCATA----TGCGGTC 342
BSNT_05355___ 285 TTCG-TC---TGCTTCG---GAAGATTTAGAAGGC-----GCCTCATTCG 322
|| || .|||.|| |||||||| || |||||.||||
BL01065 343 --CGATCAAGCGCTACGGCAGAAGATTT-----GCCTCATGCCTCTTTCG 385
BSNT_05355___ 323 CGGGTCAATATGAAACCTACTTAAATATCAAAACAGAGGAAGAGTTTCTG 372
|.||.||..|.||.||.||.||||||||.|| |||||.|| .|
BL01065 386 CCGGGCAGCAAGATACGTATTTAAATATAAA-----AGGAATAG----AG 426
BSNT_05355___ 373 GCTAAAGTGAA-------AG--AATGCTGGGCCTCATTTTTTTCTGGGCG 413
||.|...|||| || ||||||||||.|||.|.|||.|.|.|||
BL01065 427 GCGATCTTGAAGCATATCAGCAAATGCTGGGCTTCACTGTTTACAGAGCG 476
BSNT_05355___ 414 GGTCAGCAGCTATAAGAAAAAAA-------TGAACAATCAAATCGCAGAG 456
||.|...|.|||...||...||| |||.| |.||||.||
BL01065 477 GGCCGTGATCTACCGGATTCAAAACGGTTTTGACC------ACCGCAAAG 520
BSNT_05355___ 457 --CCGTTAATGGGAATAGTCGTTCAG-----GGGCTGATC---GATTCAG 496
|..|||..|| |.|||||.||| || ||.|| |||.|
BL01065 521 TTCAATTATCGG---TCGTCGTCCAGCAGATGG--TGTTCCCGGATGC-- 563
BSNT_05355___ 497 AAATGTCAGGTGTTATCTTCAGCCGCA-ACCCTGTTAC--CCA------- 536
|||.||..||.|.||.| |.||| |.|||.|||| |||
BL01065 564 ----GTCCGGCATTTTGTTTA-CGGCAGATCCTATTACATCCAACCGGAA 608
BSNT_05355___ 537 ------------TGATG-ATAGAGAGCTTTTAATCAGCGCCAGCTACGGG 573
||||| | |||||| |||
BL01065 609 GGTCACCTCGATTGATGCA-----AGCTTT------------GCT----- 636
BSNT_05355___ 574 TTGGGTGAAGCTGTTGTTTCAGGAAGTGTTACCCCAGACACGTTCATTGT 623
|||||.||.||..||||.||.||.|..|||.|..||||||..|.||..||
BL01065 637 TTGGGAGAGGCGCTTGTATCTGGTACAGTTTCAGCAGACAACTACAAGGT 686
BSNT_05355___ 624 TAATAA-------ATCTTCGTTTGAGATTCAGAA-----------AGAAA 655
|..|.| ||| |||||.|| |||||
BL01065 687 TCGTGAAGGCGCGATC----------ATTCAAAAAACGATTTCCGAGAAA 726
BSNT_05355___ 656 TAGGTGCAAAGGAAATCTA---CATGG--AGTCTGCGGCA---------- 690
.|| |.||.|.|||| ..||| || |.||||||
BL01065 727 AAG-----ACGGCAGTCTATTCTTTGGAAAG-CGGCGGCACTGAGGCGCG 770
BSNT_05355___ 691 -GAAG--GAA------TTGCTGAAAAAGAAACGAGTGAAGACATGCGCAG 731
|||| ||| |..|.||||.||.|| ||||
BL01065 771 CGAAGTCGAAGCGGGCTGCCGGAAAGAGCAA---------ACAT------ 805
BSNT_05355___ 732 CCGTTTTTGCCTTACAGATGAACAAGTGATTGAAT-TGGC-TGAAATCAC 779
|.||||||||||| ||| .|| .||| ||||| .||
BL01065 806 -----------TAACAGATGAACA---GAT--CATCCGGCTTGAAA-AAC 838
BSNT_05355___ 780 ----AAAAAAAACCGAAGACCTGTACGGATATCCTGTCGATATAGAATTT 825
||..|.||.|||||.||..|.|||.|.|||....|||||.||||..
BL01065 839 TGGGAAGGAGAATCGAAGCCCATTTCGGTTTTCCGCAGGATATTGAATGG 888
BSNT_05355___ 826 GGAATTGCTGATCATCAAATATACCTTCTGCA-AGCTCGCCCGATTACAA 874
.|..|.||||||....||.|.|.|.||.|.|| ||| ||.||.||.||.|
BL01065 889 TGTCTGGCTGATGGCGAATTTTTCTTTGTCCAGAGC-CGGCCTATAACGA 937
BSNT_05355___ 875 CCATTG-------ATCAGGACAAAAAG-GCGGCAGAAGAAAAACGCAGCT 916
||||| .||.| |||.|| || ||.||.| ||||
BL01065 938 -CATTGTTTCCTCTTCCG---AAACAGAGC----GATGACA-----AGCT 974
BSNT_05355___ 917 TCATGATTACCGACACTGATATGAATGATTTCTGGC-TTAACATGGAGTC 965
||..|..| |||||..|| ||.||| |.|.||
BL01065 975 TCGCGTCT----------ATATGTCTG---TCGGGCATCAGCA------- 1004
BSNT_05355___ 966 TAATATTGA-AGGTCCGGTGAGTC------------CGTTATT----TTC 998
|||..||| ||..|||.|.|.|| ||||.|| ||.
BL01065 1005 -AATGATGACAGAACCGATCAATCCGCTTGGAATATCGTTTTTCGGGTTG 1053
BSNT_05355___ 999 ATC----------------CTTCATCGTGCCGGCATTGGAA-------TA 1025
||| ||| |||||||| |||| ||
BL01065 1054 ATCTCGGATTATGAGCTGACTT----GTGCCGGC---GGAAGGCTTTTTA 1096
BSNT_05355___ 1026 TGGCTTGA--AGAAGA----GCA-----TGCA------AAAGT-TTCCGA 1057
|.|.||.| |.|.|| ||| |||| ||||| .|||
BL01065 1097 TTGATTTATCACACGATTTGGCATCTTTTGCAGGGCGGAAAGTCGTCC-- 1144
BSNT_05355___ 1058 TTGGT--GTA-GTTGTTGATGAAGTAAAA-----CTTT-----ATCGCGG 1094
| ||| |..|..|| |||| |||| ||.|||.
BL01065 1145 ----TCAGTACGGCGGGGA------AAAATGATCCTTTCATGCATAGCGC 1184
BSNT_05355___ 1095 ACAT----ATTTATTCCAAAAACCAAGGTGGACAGCAGCCTCCTTCTGAA 1140
.|.| ||||.||..||| ||.||.|| |||.|.||
BL01065 1185 TCTTGTGAATTTTTTGAAAA----------GAAAGGAG----CTTGTCAA 1220
BSNT_05355___ 1141 GA--CTGCGGCAAAG---AGCTTTTCCCGAT-TTTA---TCGGAGCATAT 1181
.| ||||.| |||| || |.||| |||| |.||.|| |
BL01065 1221 AACCCTGCCG-AAAGGGAAG------CGGATGTTTAGATTAGGGGC---T 1260
BSNT_05355___ 1182 GTA----TGACATCATCAATCACACATACCTCCC---------------T 1212
|.| ||.|||..|| .||.|| .
BL01065 1261 GAAGGGCTGTCATGGTC-----------GCTGCCGGGTGATGCGCTGAAG 1299
BSNT_05355___ 1213 TTTTACCGGACACTGGAC-CAGCTCGCA--CAAACTGAGCATACCGCAGA 1259
.|||||||||.|...||| |||.| |.| |||||.|..||| |..||
BL01065 1300 ATTTACCGGAAAAACGACACAGAT-GTAGTCAAACGGCTCAT---GTCGA 1345
BSNT_05355___ 1260 AAGCGCA-----------------CTGGA-TGCTTTTCAAAAAC------ 1285
|||||.| |||.| .||..||.||||||
BL01065 1346 AAGCGGAAGCATCCATTCAAGAGGCTGAACAGCGATTGAAAAACGCATCG 1395
BSNT_05355___ 1286 ---TAAAGGCCTTTTATCT-CACGGCTTAT-GAAGAGCACTTCAATATCG 1330
.|||.| ||||.| |||.| || ||||||.| ||||
BL01065 1396 GGTGAAACG----TTATTTGCACAG---ATAGAAGAGGA--TCAA----- 1431
BSNT_05355___ 1331 TTTTCCCGCAAATCCTTTTAACAAACAAACTGCAAGCGATGTATCAGGAC 1380
|||..||| .||.|||.|.| |.||| .
BL01065 1432 ---------AAAAGCTT-----GAAAAAAGTTC------TCTAT-----G 1456
BSNT_05355___ 1381 ATTCAAGGAGAGTCCGAAAACGC--TCATT--------TTTATGAGATGC 1420
||||| ||||| .|..|| |.||| ||||| ||||
BL01065 1457 ATTCA--GAGAG-----CATGGCTGTAATTATGGTTGGTTTAT---ATGC 1496
BSNT_05355___ 1421 ---TGACAG--------GAAAAATGAACAAATCACTGG-------AAACG 1452
|.||.| ||||||||.|.||||..||.| |||.|
BL01065 1497 CGTTTACTGGCTCAATCGAAAAATGGAGAAATGGCTTGGCGAAAAAAATG 1546
BSNT_05355___ 1453 -------GACCGTTGCT-TATGGCTATT-TTCTATGGAAGTTCAGGAGAA 1493
.|||.||.|| .||.|.|||| |.|.||| |||
BL01065 1547 TCGCCGATACCCTTTCTCAATCGGTATTGTACAATG-----TCA------ 1585
BSNT_05355___ 1494 CCCGAACCTTCTGACCAT-----------TTTTGAAAACAACA-----AG 1527
|.||||| .|| |||||.|...|.|| .|
BL01065 1586 -------CATCTGA-AATGGGATTGGCGCTTTTGGATGTATCAGATGCTG 1627
BSNT_05355___ 1528 CCTGA----AC----AGCTCCAGGAGAAATTAGAA----CAAACAGATGA 1565
||.|| || ||.|.|||.||.|.||||.| |.||.| ||
BL01065 1628 CCAGAGGATACCCCGAGGTTCAGAAGTATTTAGCATATGCCAATA-AT-- 1674
BSNT_05355___ 1566 GGGGAGACACTTCCTGAAGAAC------------------GTC------- 1590
||.||..||..||||||.| |||
BL01065 1675 ---GAAACCTTTTTTGAAGATCTCAAACAGCTTGACGGCGGTCCCGCCTT 1721
BSNT_05355___ 1591 --------CAT-----GAATT-CTTGCAAGAA-TACGG-ATG-------- 1616
||| |.||| |||| |||| ||||| |||
BL01065 1722 TATCGGCGCATTGCGGGCATTCCTTG--AGAAGTACGGCATGCGCTGCAC 1769
BSNT_05355___ 1617 ----GAGATCTGTTAAAAGTCATGATCTGATTGAACAAATCTGGGTGGAA 1662
|||||| |.||.|| .||.||.|.| ||||...|||
BL01065 1770 CGGTGAGATC-GATATAA-CCAAGACCCG-----------CTGGAGCGAA 1806
BSNT_05355___ 1663 AATCCGTATTTCGCTCTGGCT--AAT-AT-----------TCAA-AATTA 1697
..||| ||.|..|||.||| ||| || |||| ||||.
BL01065 1807 CGTCC---TTCCATTCTTGCTCCAATCATTTTGAGCAACATCAAGAATTT 1853
BSNT_05355___ 1698 T--GTCCG------TAATGGCTATCATTTTGACAATG---AATTTCAGAA 1736
| |.||| .||.||||| |.|||||..|.| .||| |.|
BL01065 1854 TGAGCCCGGCGCGCGAACGGCTA--AGTTTGAACAGGGGCGATT---GGA 1898
BSNT_05355___ 1737 AACGAAAGAAAAACGAGAGAAATT-------------------------- 1760
|.|| .|||||||.|||||..|||
BL01065 1899 AGCG-GAGAAAAAGGAGAGGGATTTGTTAAGCCGTCTGCAACAACTAAAG 1947
BSNT_05355___ 1761 ------ATACAATGAATTCTTGGAAA-----ACATAGAAGATCCCGGTT- 1798
|.|||| || ||.|| |||.||||||| |.|
BL01065 1948 GGAGGCAGACAA--AA-----GGCAAAAAGGACAAAGAAGAT----GATC 1986
BSNT_05355___ 1799 -------TGCGCACCGAATTTGA-CCGCTAT------TATC---AATGGA 1831
|||| ||||||.| |.||||| |||| |||...
BL01065 1987 AGCGTGCTGCG----GAATTTTATCGGCTATCGGGAATATCCCAAATACG 2032
BSNT_05355___ 1832 CACTG----AACTC---TGCAAATATAA--AAGATGATCACCACTTTTAT 1872
|.||| |||.| |.||.|||||| ||| |.||.||
BL01065 2033 CTCTGATCAAACGCTATTTCATATATAAGGAAG----------CGTTGAT 2072
BSNT_05355___ 1873 -ATTGACGCCATGCTGGATGCCAAGGCGAGAATCTTTCTGCTGAAGATAG 1921
|..||.||| |||| |.||.|.||..|||| ||
BL01065 2073 GAAAGAAGCC--GCTG----------------TTTTACAGCAAAAGA-AG 2103
BSNT_05355___ 1922 GTGAATTGCTGGCGGAAAACGGTGTCATTCAAGATCGTGAGGACCTTTGG 1971
.||| |.|..||| ||| ||||| |..
BL01065 2104 CTGA--TACAAGCG----------------AAG-----GAGGA----TAT 2126
BSNT_05355___ 1972 TTTTTATATGAC----GACGAAGTGGAACAAGCGCTTCTTCAC---CCTG 2014
||.||||.||.| ||.|||.||.||.|||| |.|.|.||| || |
BL01065 2127 TTATTATTTGTCCTTTGATGAATTGAAAGAAGC-CGTGTGCACAAACC-G 2174
BSNT_05355___ 2015 TATCCCTGCAAGAAAAGGCTGAAAAACGCAGACAGATTTTTCATGAGTAT 2064
|.||..|| ||||.| ||||
BL01065 2175 TCTCGATG-----------TGAAGA--------AGAT------------- 2192
BSNT_05355___ 2065 GAGCTGGCCCAAGCCCCTGCCTACCTCGGCACCCCGACAAAAGAACAGCT 2114
|||..||||||.|||.
BL01065 2193 ----------------------------------CGAGGAAAGAAAAGCG 2208
BSNT_05355___ 2115 CAA-AGCAGC----TGAAGAAATTGTCGGCGCTGTGATAGAGGATGA--- 2156
.|| |.|.|| |||| ||||||.||.|.|.|.|| |..||||
BL01065 2209 GAATATCGGCATTATGAA-AAATTGACGCCTCCGCGA---ATCATGACTT 2254
BSNT_05355___ 2157 -AAAA---------AACA-CAGAGAATCATATTTTTGGCATTGCGGCATC 2195
|.|| |.|| |.||||| ||.|||.||.|||
BL01065 2255 CAGAAGGCGAGGTCATCACCGGAGAA-----------GCCTTGGGGGATC 2293
BSNT_05355___ 2196 AAGCGGCATTGCGACAGG---------------TCCGGTGAAAATCATTC 2230
| ||||.||.|||| |||.|| .||| ||
BL01065 2294 A-----CATTCCGGCAGGAGCGTTGGCGGGCGTTCCTGT----TTCA-TC 2333
BSNT_05355___ 2231 GGG-------------ACGCCAA---TGAATTTTCTCAATTCG-----CG 2259
||| |.|.||| ||| ||||.||.|.| .|
BL01065 2334 GGGGATCATCGAAGGAAGGGCAAGAGTGA---TTCTGAAATTGGAGGAAG 2380
BSNT_05355___ 2260 CC-----------TGGGGACGTACT--------CGTTTGCAAGAT--GAC 2288
|| .|||||..|.|| |.|||.| |||| ||.
BL01065 2381 CCGATATCGAAGAGGGGGATATCCTTGTCACGCCTTTTAC-AGATCCGAG 2429
BSNT_05355___ 2289 C---ACACCGCTATGGACCAGCCTGTTTCAAGACGCCAAAGCGATAATTA 2335
| ||||||.||| .|||.|||| .|||||...|..|.|
BL01065 2430 CTGGACACCGTTAT--------TTGTCTCAA----TCAAAGGTTTGGTGA 2467
BSNT_05355___ 2336 CAGACACAGGCGGCATTTTGTCTCACGCTGCGATTATTGCCCGTGAATAC 2385
|.||....||||||.|..||.|.||||..||..|||||||.||.||||||
BL01065 2468 CTGAAGTGGGCGGCCTCATGACACACGGCGCTGTTATTGCGCGGGAATAC 2517
BSNT_05355___ 2386 GGCATTCCAGCCGTTCTCG-------GCACACGCACGGCAACCGAAAG-A 2427
||..||||.||.||..|.| |||..|| .|||||| |
BL01065 2518 GGGCTTCCGGCGGTGGTGGGGGTTGAGCATGCG--------ACGAAAGAA 2559
BSNT_05355___ 2428 CTGCGAGACGGTGACATCATCACTGTTGACGGTAGCAGCGGCA--AAATC 2475
.|...||||||..|.|..||||...||.|||| |.|||.| |.||
BL01065 2560 ATTAAAGACGGACAGAAGATCAGGATTAACGG----ATCGGAAGGATAT- 2604
BSNT_05355___ 2476 ACAGTTGTCAGCCGGTCCT-GA---- 2496
||||..| |.|| ||
BL01065 2605 ---GTTGAAA-----TACTCGAATGA 2622
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