Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00231 and BL01040

See Amino acid alignment / Visit BSNT_00231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00231___rplX.1.5803.seq
#    -bsequence dna-align/BL01040___rplX.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00231___rplX-BL01040___rplX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00231___rplX-BL01040___rplX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00231___rplX
# 2: BL01040___rplX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 312
# Identity:     280/312 (89.7%)
# Similarity:   280/312 (89.7%)
# Gaps:           0/312 ( 0.0%)
# Score: 1272.0
# 
#
#=======================================

BSNT_00231___      1 ATGCATGTAAAAAAAGGCGATAAAGTTATGGTTATCTCTGGTAAAGATAA     50
                     ||||||||.|||||||||||||||||.||||||||||||||||||||.||
BL01040___rpl      1 ATGCATGTTAAAAAAGGCGATAAAGTAATGGTTATCTCTGGTAAAGACAA     50

BSNT_00231___     51 AGGCAAACAAGGAACAATCCTTGCTGCTTTCCCTAAAAAGGACCGCGTTT    100
                     |||.||.|||||...|||.|||||.||||||||||||||.||||||||..
BL01040___rpl     51 AGGGAAGCAAGGTGTAATTCTTGCAGCTTTCCCTAAAAAAGACCGCGTAA    100

BSNT_00231___    101 TAGTTGAAGGTGTTAACATGGTAAAGAAACACTCTAAACCAACTCAAGCT    150
                     |.|||||.|||||.||||||||.|||||.|||||.||.||.||||||||.
BL01040___rpl    101 TCGTTGAGGGTGTCAACATGGTGAAGAAGCACTCAAAGCCGACTCAAGCA    150

BSNT_00231___    151 AACCCTCAAGGCGGTATTTCTAATCAAGAGGCGCCAATTCATGTATCAAA    200
                     ||||||||||||||.||||..|||||||||||||||||||||||.|||||
BL01040___rpl    151 AACCCTCAAGGCGGAATTTTAAATCAAGAGGCGCCAATTCATGTGTCAAA    200

BSNT_00231___    201 CGTTATGCCGCTCGATCCTAAAACAGGTGAAGTGACTCGCGTAGGATACA    250
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
BL01040___rpl    201 CGTAATGCCGCTCGATCCTAAAACAGGTGAAGTGACTCGCGTAGGATACA    250

BSNT_00231___    251 AAGTGGAAGATGGCAAAAAAGTTCGTGTAGCAAAAAAATCTGGGCAAGTT    300
                     ||||.|||.|||||||||||||||||.|.|||||||||||||||||||||
BL01040___rpl    251 AAGTAGAAAATGGCAAAAAAGTTCGTATTGCAAAAAAATCTGGGCAAGTT    300

BSNT_00231___    301 CTAGATAAATAG    312
                     ||||||||.|||
BL01040___rpl    301 CTAGATAACTAG    312


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