Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00234 and BL01037

See Amino acid alignment / Visit BSNT_00234 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00234___rpsH.1.5803.seq
#    -bsequence dna-align/BL01037___rpsH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00234___rpsH-BL01037___rpsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00234___rpsH-BL01037___rpsH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00234___rpsH
# 2: BL01037___rpsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 399
# Identity:     353/399 (88.5%)
# Similarity:   353/399 (88.5%)
# Gaps:           0/399 ( 0.0%)
# Score: 1581.0
# 
#
#=======================================

BSNT_00234___      1 ATGGTTATGACAGATCCAATTGCAGATATGCTAACTCGTATTCGCAATGC     50
                     |||||||||||||||||.||||||||||||||.|||||||||||.|||||
BL01037___rps      1 ATGGTTATGACAGATCCGATTGCAGATATGCTGACTCGTATTCGTAATGC     50

BSNT_00234___     51 AAACATGGTACGTCATGAGAAGCTTGAAATTCCTGCTTCTAAATTGAAAA    100
                     ||||||||||||||||||||||||.|||||||||||||||||.|||||||
BL01037___rps     51 AAACATGGTACGTCATGAGAAGCTCGAAATTCCTGCTTCTAAGTTGAAAA    100

BSNT_00234___    101 GAGAAATTGCTGAAATTTTAAAGCGTGAAGGTTTCATTCGTGACGTTGAG    150
                     ||||.||.||||||||.||.||..|.|||||||||||.||||||||.||.
BL01037___rps    101 GAGAGATCGCTGAAATCTTGAAAAGAGAAGGTTTCATCCGTGACGTAGAA    150

BSNT_00234___    151 TTCGTAGAAGACAGCAAACAAGGTATTATCCGCGTTTTCTTGAAATACGG    200
                     |||.|.|||||.|.|||||||||.||.|||||.|||||||||||||||||
BL01037___rps    151 TTCATTGAAGATAACAAACAAGGCATCATCCGTGTTTTCTTGAAATACGG    200

BSNT_00234___    201 ACAAAACAACGAGCGCGTTATCACTGGTCTTAAAAGAATCAGCAAGCCTG    250
                     |||||||||||||||.||.||||||||.|||||||||||||||||.||.|
BL01037___rps    201 ACAAAACAACGAGCGTGTCATCACTGGCCTTAAAAGAATCAGCAAACCAG    250

BSNT_00234___    251 GTTTGCGTGTTTATGCTAAATCTAATGAAGTACCTCGCGTACTTAACGGT    300
                     ||.||||.|||||.|||||.||.||.|||||.||||||||.||||||||.
BL01037___rps    251 GTCTGCGCGTTTACGCTAAGTCAAACGAAGTGCCTCGCGTGCTTAACGGA    300

BSNT_00234___    301 CTTGGAATCGCGATTATTTCTACATCACAAGGTGTTTTAACGGACAAAGA    350
                     |||||||||||.|||.|||||||||||||||||||.||||||||.|||||
BL01037___rps    301 CTTGGAATCGCAATTCTTTCTACATCACAAGGTGTGTTAACGGATAAAGA    350

BSNT_00234___    351 AGCCCGTGCAAAACAAGCTGGTGGAGAAGTTCTAGCATACGTTTGGTAA    399
                     ||||||.||.|||||.|||||.||||||||..|||||||||||||||||
BL01037___rps    351 AGCCCGCGCTAAACAGGCTGGCGGAGAAGTATTAGCATACGTTTGGTAA    399


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