Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00237 and BL01034

See Amino acid alignment / Visit BSNT_00237 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00237___rpsE.1.5803.seq
#    -bsequence dna-align/BL01034___rpsE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00237___rpsE-BL01034___rpsE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00237___rpsE-BL01034___rpsE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00237___rpsE
# 2: BL01034___rpsE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 507
# Identity:     481/507 (94.9%)
# Similarity:   481/507 (94.9%)
# Gaps:           0/507 ( 0.0%)
# Score: 2301.0
# 
#
#=======================================

BSNT_00237___      1 ATGATTATGCGTCGTATTGACCCAAGCAAATTAGAGTTAGAAGAACGCTT     50
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BL01034___rps      1 ATGAATATGCGTCGTATTGACCCAAGCAAATTAGAGTTAGAAGAACGCTT     50

BSNT_00237___     51 AGTTACGGTTAACCGCGTAGCGAAAGTTGTTAAAGGTGGTCGTCGTTTCC    100
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
BL01034___rps     51 AGTTACCGTTAACCGCGTAGCGAAAGTTGTTAAAGGTGGTCGTCGTTTCC    100

BSNT_00237___    101 GCTTCGCAGCTCTAGTCGTTGTCGGTGACAAAAACGGACACGTAGGATTC    150
                     |.|||||||||||||||||||||||||||||||||||.|||||.||.|||
BL01034___rps    101 GTTTCGCAGCTCTAGTCGTTGTCGGTGACAAAAACGGTCACGTTGGTTTC    150

BSNT_00237___    151 GGTACTGGTAAAGCACAAGAAGTACCAGAAGCGATCCGCAAAGCTGTTGA    200
                     ||.||||||||||||||||||||.||.||||||||.||||||||||||||
BL01034___rps    151 GGAACTGGTAAAGCACAAGAAGTTCCGGAAGCGATTCGCAAAGCTGTTGA    200

BSNT_00237___    201 AGATGCGAAAAAGAATTTGATTGAAGTACCAATGGTTGGAACTACAATTC    250
                     |||||||||||||||||||||.||||||||||||||||||||||||||||
BL01034___rps    201 AGATGCGAAAAAGAATTTGATCGAAGTACCAATGGTTGGAACTACAATTC    250

BSNT_00237___    251 CACACGAAATCATCGGACGTTTCGGTGCAGGTAACATCTTGTTAAAACCT    300
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BL01034___rps    251 CACACGAAATCATCGGACGTTTCGGTGCAGGAAACATCTTGTTAAAACCT    300

BSNT_00237___    301 GCTTCTGAAGGTACTGGAGTTATCGCTGGAGGCCCTGTACGTGCGGTACT    350
                     ||||||||||||||.|||||.||||||||||||||.||||||||||||||
BL01034___rps    301 GCTTCTGAAGGTACGGGAGTCATCGCTGGAGGCCCAGTACGTGCGGTACT    350

BSNT_00237___    351 TGAGCTAGCTGGTGTAGCTGATATCCTTTCTAAGTCTTTAGGTTCTAACA    400
                     ||||||.||.||||||.|||||||||||||||||||||||||||||||||
BL01034___rps    351 TGAGCTTGCAGGTGTATCTGATATCCTTTCTAAGTCTTTAGGTTCTAACA    400

BSNT_00237___    401 CACCGATCAACATGATTCGTGCAACACTTCAAGGTTTAAGTGAACTTAAA    450
                     ||||||||||||||||.|||||||||.|.|||||||||||.||.||.|||
BL01034___rps    401 CACCGATCAACATGATCCGTGCAACAGTCCAAGGTTTAAGCGAGCTGAAA    450

BSNT_00237___    451 CGTGCTGAAGACGTTGCGAAGCTTCGTGGAAAATCTGTAGAAGAACTGTT    500
                     ||.|||||.|||||||||||||||||||||||||||||||||||||||||
BL01034___rps    451 CGCGCTGAGGACGTTGCGAAGCTTCGTGGAAAATCTGTAGAAGAACTGTT    500

BSNT_00237___    501 AGGATAA    507
                     |||||||
BL01034___rps    501 AGGATAA    507


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.