Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00247 and BL01027

See Amino acid alignment / Visit BSNT_00247 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_00247___rpsK.1.5803.seq
#    -bsequence dna-align/BL01027___rpsK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00247___rpsK-BL01027___rpsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00247___rpsK-BL01027___rpsK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00247___rpsK
# 2: BL01027___rpsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 396
# Identity:     358/396 (90.4%)
# Similarity:   358/396 (90.4%)
# Gaps:           0/396 ( 0.0%)
# Score: 1638.0
# 
#
#=======================================

BSNT_00247___      1 ATGGCTGCTGCTCGTAAATCTAACACGCGTAAACGTCGCGTGAAAAAGAA     50
                     |||||||||||.||||||.|.|||||||||||||||||||||||||||||
BL01027___rps      1 ATGGCTGCTGCACGTAAAACAAACACGCGTAAACGTCGCGTGAAAAAGAA     50

BSNT_00247___     51 TATTGAGTCTGGAATTGCTCATATTCGTTCAACTTTCAATAACACGATCG    100
                     ||||||.|||||||||||||||||.||||||||||||||.||||||||.|
BL01027___rps     51 TATTGAATCTGGAATTGCTCATATCCGTTCAACTTTCAACAACACGATTG    100

BSNT_00247___    101 TTACGATCACTGACACTCATGGTAATGCTATTTCTTGGTCTAGTGCCGGA    150
                     ||||.|||||.||...||||||.||||||.||||||||||.|||||||||
BL01027___rps    101 TTACTATCACAGATGTTCATGGCAATGCTCTTTCTTGGTCAAGTGCCGGA    150

BSNT_00247___    151 GCTTTAGGATTCAGAGGTTCTCGTAAATCTACTCCTTTTGCTGCGCAAAT    200
                     |||||||||||.|.|||||||...|||||.|||||.||.|||||.|||||
BL01027___rps    151 GCTTTAGGATTTAAAGGTTCTAAAAAATCCACTCCATTCGCTGCACAAAT    200

BSNT_00247___    201 GGCTGCAGAAACAGCTGCTAAAGGTTCAATCGAACATGGTCTTAAAACTC    250
                     ||||||.||||||||||||||||||||.|||||||||||.||||||||||
BL01027___rps    201 GGCTGCTGAAACAGCTGCTAAAGGTTCTATCGAACATGGACTTAAAACTC    250

BSNT_00247___    251 TAGAGGTTACTGTTAAAGGACCTGGTTCAGGCCGTGAAGCTGCAATCCGT    300
                     |.||.||||||||.||||||||.|||||.|||||||||||||||||.|||
BL01027___rps    251 TTGAAGTTACTGTAAAAGGACCAGGTTCCGGCCGTGAAGCTGCAATTCGT    300

BSNT_00247___    301 GCACTTCAAGCTGCTGGACTAGAAGTCACTGCTATCAGAGACGTAACTCC    350
                     ||||||||||||||||||||||||||.||.||.||||||||||||||.||
BL01027___rps    301 GCACTTCAAGCTGCTGGACTAGAAGTTACAGCGATCAGAGACGTAACGCC    350

BSNT_00247___    351 TGTTCCTCATAACGGATGCCGTCCACCAAAACGTCGCCGCGTGTAA    396
                     ||||||||||||||||||||||||.|||||||||||||||||||||
BL01027___rps    351 TGTTCCTCATAACGGATGCCGTCCGCCAAAACGTCGCCGCGTGTAA    396


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.