Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00248 and BL01025
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_00248___rpoA.1.5803.seq
# -bsequence dna-align/BL01025___rpoA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00248___rpoA-BL01025___rpoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00248___rpoA-BL01025___rpoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00248___rpoA
# 2: BL01025___rpoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 945
# Identity: 842/945 (89.1%)
# Similarity: 842/945 (89.1%)
# Gaps: 0/945 ( 0.0%)
# Score: 3798.0
#
#
#=======================================
BSNT_00248___ 1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA 50
||||||||||||||||||||||||||||||||||||||||||||||||||
BL01025___rpo 1 ATGATCGAGATTGAAAAACCAAAAATCGAAACGGTTGAAATCAGCGACGA 50
BSNT_00248___ 51 TGCCAAATTTGGTAAGTTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA 100
||||||.|.||||||.||||||||||||||||||||||||||||||||||
BL01025___rpo 51 TGCCAAGTATGGTAAATTTGTCGTAGAGCCACTTGAGCGTGGATATGGTA 100
BSNT_00248___ 101 CAACTCTGGGTAACTCCTTACGTCGTATCCTCTTATCCTCACTCCCTGGT 150
|||||.|||||||||||||||||||||||||.||||||||||||||||||
BL01025___rpo 101 CAACTTTGGGTAACTCCTTACGTCGTATCCTTTTATCCTCACTCCCTGGT 150
BSNT_00248___ 151 GCCGCTGTAACATCAATCCAGATAGATGGTGTACTGCACGAATTCTCGAC 200
||||||||||||||.|||||.|||||||||||||||||.|||||||||||
BL01025___rpo 151 GCCGCTGTAACATCGATCCAAATAGATGGTGTACTGCATGAATTCTCGAC 200
BSNT_00248___ 201 AATTGAAGGCGTTGTGGAAGATGTTACAACGATTATCTTACACATTAAAA 250
.||.|||||||||||.||||||||||||||||||||||||.|||||||||
BL01025___rpo 201 GATCGAAGGCGTTGTTGAAGATGTTACAACGATTATCTTAAACATTAAAA 250
BSNT_00248___ 251 AGCTTGCATTGAAAATCTACTCTGATGAAGAGAAGACGCTAGAAATTGAT 300
|.||||||.||||||||||||||||.||||||||||||||.||.||||||
BL01025___rpo 251 AACTTGCACTGAAAATCTACTCTGAAGAAGAGAAGACGCTTGAGATTGAT 300
BSNT_00248___ 301 GTACAGGGTGAAGGAACTGTAACGGCAGCTGATATTACACACGATAGTGA 350
||.||||||||||||..||||||.||.|||||||||||.|||||.|||||
BL01025___rpo 301 GTTCAGGGTGAAGGAGTTGTAACAGCTGCTGATATTACCCACGACAGTGA 350
BSNT_00248___ 351 TGTAGAGATCTTAAATCCTGATCTTCATATCGCGACTCTTGGTGAGAATG 400
|||.|||||.||.||||||||||||||.||.|||||||||||..|.||||
BL01025___rpo 351 TGTTGAGATTTTGAATCCTGATCTTCACATTGCGACTCTTGGCCAAAATG 400
BSNT_00248___ 401 CGAGTTTCCGAGTTCGCCTTACTGCTCAAAGAGGACGTGGGTATACGCCT 450
|||||||.|||||||||.|.||||||||||||||.||.||||||||.||.
BL01025___rpo 401 CGAGTTTTCGAGTTCGCTTAACTGCTCAAAGAGGTCGCGGGTATACACCA 450
BSNT_00248___ 451 GCTGACGCAAACAAGAGAGACGATCAGCCAATCGGCGTGATTCCGATCGA 500
||||||||.||.||.||||||||||||||.||.|||||.||.|||||.||
BL01025___rpo 451 GCTGACGCGAATAAAAGAGACGATCAGCCGATTGGCGTCATCCCGATTGA 500
BSNT_00248___ 501 TTCTATCTATACGCCAGTTTCTCGTGTATCTTATCAGGTAGAGAACACTC 550
|||.||||.|||.||.||||||||.|||||||||||.||.|||||.||||
BL01025___rpo 501 TTCCATCTTTACACCTGTTTCTCGCGTATCTTATCAAGTTGAGAATACTC 550
BSNT_00248___ 551 GTGTAGGCCAAGTTGCAAACTATGATAAACTTACACTTGATGTTTGGACT 600
||||.||.||..||.||||||||||.||||||||.|||||.||.|||||.
BL01025___rpo 551 GTGTGGGTCAGATTACAAACTATGACAAACTTACGCTTGACGTATGGACA 600
BSNT_00248___ 601 GATGGAAGCACTGGACCGAAAGAAGCAATTGCGCTTGGTTCAAAGATTTT 650
|||||||||||||||||.||||||||.|||||.|||||||||||||||||
BL01025___rpo 601 GATGGAAGCACTGGACCAAAAGAAGCTATTGCACTTGGTTCAAAGATTTT 650
BSNT_00248___ 651 AACTGAACACCTTAATATATTCGTTGGTTTAACTGACGAAGCTCAACATG 700
.|||||||||||||||||.||.||.|||||.||.|||||||||||.||.|
BL01025___rpo 651 GACTGAACACCTTAATATTTTTGTCGGTTTGACCGACGAAGCTCAGCACG 700
BSNT_00248___ 701 CTGAAATCATGGTTGAAAAAGAAGAAGATCAAAAAGAGAAAGTTCTTGAA 750
|||||||||||||.|||||||||||.|||||||||||.||||||||||||
BL01025___rpo 701 CTGAAATCATGGTAGAAAAAGAAGAGGATCAAAAAGAAAAAGTTCTTGAA 750
BSNT_00248___ 751 ATGACAATTGAAGAATTGGATCTTTCTGTTCGTTCTTACAACTGCTTAAA 800
|||||.|||||||||.|.||||||||.||.|||||||||||||||||.||
BL01025___rpo 751 ATGACTATTGAAGAACTCGATCTTTCAGTCCGTTCTTACAACTGCTTGAA 800
BSNT_00248___ 801 GCGTGCGGGTATTAACACGGTTCAAGAGCTTGCGAACAAGACGGAAGAAG 850
||||||.||.||.||.||.||||||||.|||||||||||.||.|||||||
BL01025___rpo 801 GCGTGCAGGAATCAATACAGTTCAAGAACTTGCGAACAAAACTGAAGAAG 850
BSNT_00248___ 851 ATATGATGAAAGTTCGAAATCTAGGACGCAAATCACTTGAAGAAGTGAAA 900
||||||||||||||||.||.||.||.|||||.||.|||||||||||.|||
BL01025___rpo 851 ATATGATGAAAGTTCGCAACCTGGGCCGCAAGTCGCTTGAAGAAGTAAAA 900
BSNT_00248___ 901 GCGAAACTAGAAGAACTTGGACTCGGACTTCGCAAAGACGATTGA 945
||||||||.||||||||||||||.||.||||||||||||||||||
BL01025___rpo 901 GCGAAACTTGAAGAACTTGGACTTGGCCTTCGCAAAGACGATTGA 945
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