Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00253 and BL01020

See Amino acid alignment / Visit BSNT_00253 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:57
# Commandline: needle
#    -asequence dna-align/BSNT_00253___truA.1.5803.seq
#    -bsequence dna-align/BL01020___truA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00253___truA-BL01020___truA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00253___truA-BL01020___truA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00253___truA
# 2: BL01020___truA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 782
# Identity:     544/782 (69.6%)
# Similarity:   544/782 (69.6%)
# Gaps:          76/782 ( 9.7%)
# Score: 1834.5
# 
#
#=======================================

BSNT_00253___      1 ATGAGACTGAAATGCACGATTTCTTATGACGGACATTTGTTTAACGGTTA     50
                     ||||||.||||.|||||||||||.|||||||||||..|.|||.||||.||
BL01020___tru      1 ATGAGAATGAAGTGCACGATTTCATATGACGGACACCTTTTTTACGGCTA     50

BSNT_00253___     51 TCAGGTTCAGCC-GGGCAAAAGAACGGTTCAGGATGAACTGGAGAAGGCT     99
                     .||.||.||||| |||| ||||||||.||||||||||.||.||.||.|| 
BL01020___tru     51 CCAAGTGCAGCCTGGGC-AAAGAACGATTCAGGATGAGCTTGAAAAAGC-     98

BSNT_00253___    100 TTGGCTGTC-----CTGCATAAGTCAAAAGACAGAATTCCGGTCGTTTCG    144
                        |||| |     ||.|||||..|.||.||..|.|||||.||||||||.
BL01020___tru     99 ---GCTG-CAAACGCTCCATAAAGCGAAGGAGCGTATTCCTGTCGTTTCA    144

BSNT_00253___    145 TCTGGAAGAACAGACAGCGGGGTTCACGCAGCCGGACAGGTGATTCATTT    194
                     ||.||..|.||.||||||||.||.|||||||.|||||||..|||||||||
BL01020___tru    145 TCCGGGCGCACCGACAGCGGCGTCCACGCAGTCGGACAGACGATTCATTT    194

BSNT_00253___    195 TGACACTCCACTGTCTATCCCGGCTGAGAGATGGCCATATGCCTTAAATG    244
                     |||||.|||.||.||.||.||.|..|.||.||||||.|||||.||.||||
BL01020___tru    195 TGACAGTCCGCTATCCATTCCTGAGGCGAAATGGCCGTATGCATTGAATG    244

BSNT_00253___    245 CACTGCTTCCGGACGATAT-------CGCAGTCAAACAGGCAGAAATTGC    287
                     |.|||||.||.||.|||||       ||||       ||||.|||..||.
BL01020___tru    245 CCCTGCTGCCCGATGATATATCGGTCCGCA-------AGGCGGAAGCTGT    287

BSNT_00253___    288 GGATGATGGGTTCCATGCACGATTT--AGCGCAGTCAA-AAAAGAATATC    334
                     ..|||||...||.|||||..|.|||  .|||.|   || |||||||||.|
BL01020___tru    288 CAATGATCAATTTCATGCGAGGTTTTCTGCGAA---AAGAAAAGAATACC    334

BSNT_00253___    335 GCTACTTTG-TATACACGGAGAAACACCCGGACGTATTTAAACGGCATTA    383
                     |.|| |.|| ||||||.||..|.|||.||||||||.||||||||..|.||
BL01020___tru    335 GGTA-TATGATATACAGGGGCAGACATCCGGACGTTTTTAAACGCTACTA    383

BSNT_00253___    384 CGCTTACCATTTTTCATATCGCCTTAATGTGCAGGACATGAGAGAAGCGG    433
                     .||.||||||.||.|.|||..||||.||.||.||.|    ||..|||   
BL01020___tru    384 TGCATACCATGTTCCTTATGACCTTGATATGGAGAA----AGTTAAG---    426

BSNT_00253___    434 CAAAGC--------ATCTTATAGGGACACATGATTTTACGAGCTTTTGCG    475
                      .||||        ||||..|.||.||.|||||.||.||.||||||||.|
BL01020___tru    427 -GAAGCCTCCCGCTATCTGGTCGGAACCCATGACTTCACAAGCTTTTGTG    475

BSNT_00253___    476 CGGCTAAAACAGAAGTGCAGGACAAGGTAAGAACGATATACGAACTTGAT    525
                     ||.|.|||||.||||||.||||.||.||.||||||.|..|.|||||.||.
BL01020___tru    476 CGACCAAAACCGAAGTGAAGGATAAAGTCAGAACGGTCCATGAACTGGAA    525

BSNT_00253___    526 TGGACTGAGACGGCTGACGGCCTGCAAATGCGGATCACAGGCAGCGGTTT    575
                     |||.||||.||.|..|||||.|||||.|||.|.||....||.|||||.||
BL01020___tru    526 TGGTCTGACACAGGGGACGGACTGCAGATGAGAATTGTGGGAAGCGGATT    575

BSNT_00253___    576 CTTATATAATATGGTCAGAATTATTGCGGGTACTTTGCTTGATGCAGGTA    625
                     .||.|||||.|||||.|||||.|||||.|||||..|.|||||||.|||.|
BL01020___tru    576 TTTGTATAACATGGTTAGAATCATTGCCGGTACGCTTCTTGATGTAGGAA    625

BSNT_00253___    626 TTGGAAAAATTTCTCCCGATGAGGTGAAATCCATGCTGGAA---------    666
                     ..||.|||.||||.||.|.|||         |||  ||.||         
BL01020___tru    626 CCGGCAAATTTTCCCCTGGTGA---------CAT--TGAAAAGATGATTC    664

BSNT_00253___    667 --GCGAAGGATCGCGAAGCGGCAGGGCGCACAGCGCCGGGGCACGGGCTA    714
                       ||.||..|.|||||.||.|||||||||||.||.||||..|||||..||
BL01020___tru    665 TTGCCAAAAACCGCGATGCCGCAGGGCGCACTGCACCGGCACACGGCTTA    714

BSNT_00253___    715 TATTTATGGAACGT-TTA-CTATGACAACTAA    744
                     |||||||||  ||| ||| |||||||||||||
BL01020___tru    715 TATTTATGG--CGTGTTATCTATGACAACTAA    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00253 and BL01020

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
