Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01265 and BL00960

See Amino acid alignment / Visit BSNT_01265 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:46
# Commandline: needle
#    -asequence dna-align/BSNT_01265___yfmL.1.5803.seq
#    -bsequence dna-align/BL00960___yfmL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01265___yfmL-BL00960___yfmL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01265___yfmL-BL00960___yfmL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01265___yfmL
# 2: BL00960___yfmL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity:     806/1172 (68.8%)
# Similarity:   806/1172 (68.8%)
# Gaps:          82/1172 ( 7.0%)
# Score: 2634.5
# 
#
#=======================================

BSNT_01265___      1 ATGACGCAAACTTGGCCATTTTTACATAATGCACAATCATTTATACAAGA     50
                     |||||..|||..||||||||||||.||||.|||.||.|.|||||.|||||
BL00960___yfm      1 ATGACAGAAAGATGGCCATTTTTAAATAAAGCAAAACCGTTTATTCAAGA     50

BSNT_01265___     51 GAATTGGAGTGCTTCCGGCTTTCAAACGCCAACCCCTGTTCAAGAGCAGG    100
                     .||.||||..||.||.|||||||||...||.||...|||.|||.|..|.|
BL00960___yfm     51 AAACTGGAAGGCGTCGGGCTTTCAAGATCCGACGAATGTCCAAAAAAACG    100

BSNT_01265___    101 CAGCCCAGCTGATCATGGACGGAAAGGATGTCATCGCGGAATCGCCGACA    150
                     |.|.|.|.|||||..|||||||....||.||.|||||.||.||||||||.
BL00960___yfm    101 CGGTCGATCTGATTTTGGACGGGCGTGACGTGATCGCCGAGTCGCCGACT    150

BSNT_01265___    151 GGCACAGGCAAGACGCTGGCGTATGCGCTGCCGGTCTTGGA---------    191
                     ||.||.|||||.|||||.||.||.|..||||||.|..||||         
BL00960___yfm    151 GGAACGGGCAAAACGCTCGCATACGTCCTGCCGATTCTGGAAAAGCTGGA    200

BSNT_01265___    192 -GCGGATCAAACCAGA----GCAAAAGCATCCGCAGGCGGTGATTTTAGC    236
                      ||||||||||  |||    ||||            ||.||||||.|.||
BL00960___yfm    201 GGCGGATCAAA--AGAACGTGCAA------------GCTGTGATTCTGGC    236

BSNT_01265___    237 GCCTTCCCGTGAGCTGGTGATGCAGATTTTTCAGGTGATTCAGGATTGGA    286
                     .||.|||||.|||||.||.||||||||||||.|.|||||....||.||||
BL00960___yfm    237 TCCATCCCGCGAGCTTGTCATGCAGATTTTTGATGTGATCGTTGAATGGA    286

BSNT_01265___    287 AAGCGGGCTCAGAGCTGCGCGCGGCTTCCTTAATCGGCGGGGCGAATGTG    336
                     ||...|||||.||..|..|.||.||||||.|.||||||||.||.|||.|.
BL00960___yfm    287 AAAAAGGCTCTGATATCAGAGCCGCTTCCCTGATCGGCGGCGCCAATATC    336

BSNT_01265___    337 AAGAAGCAGGTCGAAAAGCTGAAGAAACATCCGCATATCATCGTCGGCAC    386
                     ||.||||||...|||||||||||.|||||.|||||.|||||.|..||.||
BL00960___yfm    337 AAAAAGCAGCAGGAAAAGCTGAAAAAACACCCGCACATCATTGCAGGTAC    386

BSNT_01265___    387 GCCAGGCAGGGTATTTGAACTGATTAAAGCAAAGAAACTCAAAATGCATG    436
                     |||.||..|.||||||||.|||||||||...||.||.||.||||||||.|
BL00960___yfm    387 GCCTGGACGCGTATTTGAGCTGATTAAAATGAAAAAGCTGAAAATGCACG    436

BSNT_01265___    437 AAGTGAAAACGATTGTACTTGATGAAGCGGATCA---GCTTATCCTGCCG    483
                     |||||||||||||.||.|||||.|||.|.|||||   |||||   .||||
BL00960___yfm    437 AAGTGAAAACGATCGTCCTTGACGAAACCGATCATCTGCTTA---CGCCG    483

BSNT_01265___    484 GAGCATCGCGAGACGATCAAACAA---ATTATTAAAACGACATTAAGAGA    530
                     |||||.||||.||||||   ||||   ||.||.|||.||||..|..|.||
BL00960___yfm    484 GAGCACCGCGGGACGAT---ACAAAGCATCATCAAATCGACGCTCCGCGA    530

BSNT_01265___    531 CCGCCAGCTTCTATGTTTTTCCGCGACACTCAAAAAGGAAACAGAGGATG    580
                     |.|.|||||.||.||||||||.|||||..|.|||.|.||..|.||....|
BL00960___yfm    531 CAGGCAGCTCCTCTGTTTTTCGGCGACTTTAAAAGACGATGCCGAACGCG    580

BSNT_01265___    581 TGCTCCGCGAATTGGCGCAA-GAGCCTGAGGTGTTGAAGGTACAGCGAAG    629
                     .|||.||.|||.||.| ||| ||..|.||.||..|.|||.|..||     
BL00960___yfm    581 AGCTTCGTGAAATGAC-CAAGGATGCGGAAGTTCTCAAGATCAAG-----    624

BSNT_01265___    630 CAAGGTGGA----------GGCAGGGAAAGTGAAACATCAATACCTGATT    669
                       ||||.||          ||||   |||||.||||||||||..||..|.
BL00960___yfm    625 --AGGTCGAAAGAAGAATCGGCA---AAAGTCAAACATCAATTTCTCGTA    669

BSNT_01265___    670 TGCGACCAGCGCGACAAAGTGAAGCTGCTGCAAAAGCTGTCAAGGCTTGA    719
                     |||||||||||.||.||.|||||..|.|||||.||..|.||..|||||..
BL00960___yfm    670 TGCGACCAGCGGGATAAGGTGAAAATTCTGCAGAAATTCTCTCGGCTTCC    719

BSNT_01265___    720 AGGCATGCAGGCACTCGTATTTGTGAGAGACATTGGCAACCTGAGTGTAT    769
                     ||||||||||||.|||||.|||||.|.||||||.|||||..|.|..||||
BL00960___yfm    720 AGGCATGCAGGCGCTCGTCTTTGTTAAAGACATCGGCAATTTAAACGTAT    769

BSNT_01265___    770 ATGCGGAAAAACTGGCATATCACCACGTTGAACTCGGCGTTTTGCACAGT    819
                     ||||.|||||.||...||.|||.||.||.|||.|||||||..|.|||||.
BL00960___yfm    770 ATGCCGAAAAGCTCAAATTTCATCATGTAGAAATCGGCGTCCTTCACAGC    819

BSNT_01265___    820 GAAGCGAAAAAAATGGAGAGGGCAAAAATCATTGC-CGCATTCGAAGACG    868
                     ||.|||||||||||.|||.|.||.||||| ||||| .|||||.||.|..|
BL00960___yfm    820 GAGGCGAAAAAAATTGAGCGCGCCAAAAT-ATTGCAGGCATTTGAGGCGG    868

BSNT_01265___    869 GAGAGTTTCCTCTTTTATTGGCGACTGACATTGCCGCACGCGGTTTAGAC    918
                     |||||||..|.||..|..|.|||||.||.||.||.||.|||||..|.|||
BL00960___yfm    869 GAGAGTTCACACTGCTTCTCGCGACCGATATCGCAGCGCGCGGGATCGAC    918

BSNT_01265___    919 ATTGAAAACCTGCCATACGTGATTCATGCTGATATTCCTGATGAAGATGG    968
                     ||.|||.|.||.||.||.||.||.||.||.|||.|.||..|.|..||.||
BL00960___yfm    919 ATCGAAGATCTCCCTTATGTCATCCACGCCGATTTGCCAAACGTTGAAGG    968

BSNT_01265___    969 CTATGTCCACAGATCAGGACGAACAGGCCGGGCCGGAAAAGAAGGCAACG   1018
                     ||||.|||||.|.||.|||.|.||.||..|.||.||.||.|||||.|.||
BL00960___yfm    969 CTATATCCACCGGTCGGGAAGGACGGGAAGAGCGGGGAATGAAGGAACCG   1018

BSNT_01265___   1019 TGCTGAGCCTTGTGA--CGAAATTG--GAGGAATCTAAGCTGAAAAAAAT   1064
                     ||.|.||||||||.|  || .||||  ||.|||   |.|||||||||..|
BL00960___yfm   1019 TGATCAGCCTTGTCAACCG-CATTGAAGAAGAA---AGGCTGAAAAAGCT   1064

BSNT_01265___   1065 GGCGAAGAAGCTTGGTGTTGAAC-TGAGTGAAGCTGTGTATGCA----GG   1109
                     ||||||||||||||...||...| |.||.|.|.| |||||||.|    |.
BL00960___yfm   1065 GGCGAAGAAGCTTGAAATTCCGCTTCAGCGGATC-GTGTATGAAAGAGGA   1113

BSNT_01265___   1110 CGGAAAACTGAAGACGAAATAA   1131
                     ||||..|.||||    |.||||
BL00960___yfm   1114 CGGATTATTGAA----AGATAA   1131


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