Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01265 and BL00960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_01265___yfmL.1.5803.seq
# -bsequence dna-align/BL00960___yfmL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01265___yfmL-BL00960___yfmL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01265___yfmL-BL00960___yfmL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01265___yfmL
# 2: BL00960___yfmL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity: 806/1172 (68.8%)
# Similarity: 806/1172 (68.8%)
# Gaps: 82/1172 ( 7.0%)
# Score: 2634.5
#
#
#=======================================
BSNT_01265___ 1 ATGACGCAAACTTGGCCATTTTTACATAATGCACAATCATTTATACAAGA 50
|||||..|||..||||||||||||.||||.|||.||.|.|||||.|||||
BL00960___yfm 1 ATGACAGAAAGATGGCCATTTTTAAATAAAGCAAAACCGTTTATTCAAGA 50
BSNT_01265___ 51 GAATTGGAGTGCTTCCGGCTTTCAAACGCCAACCCCTGTTCAAGAGCAGG 100
.||.||||..||.||.|||||||||...||.||...|||.|||.|..|.|
BL00960___yfm 51 AAACTGGAAGGCGTCGGGCTTTCAAGATCCGACGAATGTCCAAAAAAACG 100
BSNT_01265___ 101 CAGCCCAGCTGATCATGGACGGAAAGGATGTCATCGCGGAATCGCCGACA 150
|.|.|.|.|||||..|||||||....||.||.|||||.||.||||||||.
BL00960___yfm 101 CGGTCGATCTGATTTTGGACGGGCGTGACGTGATCGCCGAGTCGCCGACT 150
BSNT_01265___ 151 GGCACAGGCAAGACGCTGGCGTATGCGCTGCCGGTCTTGGA--------- 191
||.||.|||||.|||||.||.||.|..||||||.|..||||
BL00960___yfm 151 GGAACGGGCAAAACGCTCGCATACGTCCTGCCGATTCTGGAAAAGCTGGA 200
BSNT_01265___ 192 -GCGGATCAAACCAGA----GCAAAAGCATCCGCAGGCGGTGATTTTAGC 236
|||||||||| ||| |||| ||.||||||.|.||
BL00960___yfm 201 GGCGGATCAAA--AGAACGTGCAA------------GCTGTGATTCTGGC 236
BSNT_01265___ 237 GCCTTCCCGTGAGCTGGTGATGCAGATTTTTCAGGTGATTCAGGATTGGA 286
.||.|||||.|||||.||.||||||||||||.|.|||||....||.||||
BL00960___yfm 237 TCCATCCCGCGAGCTTGTCATGCAGATTTTTGATGTGATCGTTGAATGGA 286
BSNT_01265___ 287 AAGCGGGCTCAGAGCTGCGCGCGGCTTCCTTAATCGGCGGGGCGAATGTG 336
||...|||||.||..|..|.||.||||||.|.||||||||.||.|||.|.
BL00960___yfm 287 AAAAAGGCTCTGATATCAGAGCCGCTTCCCTGATCGGCGGCGCCAATATC 336
BSNT_01265___ 337 AAGAAGCAGGTCGAAAAGCTGAAGAAACATCCGCATATCATCGTCGGCAC 386
||.||||||...|||||||||||.|||||.|||||.|||||.|..||.||
BL00960___yfm 337 AAAAAGCAGCAGGAAAAGCTGAAAAAACACCCGCACATCATTGCAGGTAC 386
BSNT_01265___ 387 GCCAGGCAGGGTATTTGAACTGATTAAAGCAAAGAAACTCAAAATGCATG 436
|||.||..|.||||||||.|||||||||...||.||.||.||||||||.|
BL00960___yfm 387 GCCTGGACGCGTATTTGAGCTGATTAAAATGAAAAAGCTGAAAATGCACG 436
BSNT_01265___ 437 AAGTGAAAACGATTGTACTTGATGAAGCGGATCA---GCTTATCCTGCCG 483
|||||||||||||.||.|||||.|||.|.||||| ||||| .||||
BL00960___yfm 437 AAGTGAAAACGATCGTCCTTGACGAAACCGATCATCTGCTTA---CGCCG 483
BSNT_01265___ 484 GAGCATCGCGAGACGATCAAACAA---ATTATTAAAACGACATTAAGAGA 530
|||||.||||.|||||| |||| ||.||.|||.||||..|..|.||
BL00960___yfm 484 GAGCACCGCGGGACGAT---ACAAAGCATCATCAAATCGACGCTCCGCGA 530
BSNT_01265___ 531 CCGCCAGCTTCTATGTTTTTCCGCGACACTCAAAAAGGAAACAGAGGATG 580
|.|.|||||.||.||||||||.|||||..|.|||.|.||..|.||....|
BL00960___yfm 531 CAGGCAGCTCCTCTGTTTTTCGGCGACTTTAAAAGACGATGCCGAACGCG 580
BSNT_01265___ 581 TGCTCCGCGAATTGGCGCAA-GAGCCTGAGGTGTTGAAGGTACAGCGAAG 629
.|||.||.|||.||.| ||| ||..|.||.||..|.|||.|..||
BL00960___yfm 581 AGCTTCGTGAAATGAC-CAAGGATGCGGAAGTTCTCAAGATCAAG----- 624
BSNT_01265___ 630 CAAGGTGGA----------GGCAGGGAAAGTGAAACATCAATACCTGATT 669
||||.|| |||| |||||.||||||||||..||..|.
BL00960___yfm 625 --AGGTCGAAAGAAGAATCGGCA---AAAGTCAAACATCAATTTCTCGTA 669
BSNT_01265___ 670 TGCGACCAGCGCGACAAAGTGAAGCTGCTGCAAAAGCTGTCAAGGCTTGA 719
|||||||||||.||.||.|||||..|.|||||.||..|.||..|||||..
BL00960___yfm 670 TGCGACCAGCGGGATAAGGTGAAAATTCTGCAGAAATTCTCTCGGCTTCC 719
BSNT_01265___ 720 AGGCATGCAGGCACTCGTATTTGTGAGAGACATTGGCAACCTGAGTGTAT 769
||||||||||||.|||||.|||||.|.||||||.|||||..|.|..||||
BL00960___yfm 720 AGGCATGCAGGCGCTCGTCTTTGTTAAAGACATCGGCAATTTAAACGTAT 769
BSNT_01265___ 770 ATGCGGAAAAACTGGCATATCACCACGTTGAACTCGGCGTTTTGCACAGT 819
||||.|||||.||...||.|||.||.||.|||.|||||||..|.|||||.
BL00960___yfm 770 ATGCCGAAAAGCTCAAATTTCATCATGTAGAAATCGGCGTCCTTCACAGC 819
BSNT_01265___ 820 GAAGCGAAAAAAATGGAGAGGGCAAAAATCATTGC-CGCATTCGAAGACG 868
||.|||||||||||.|||.|.||.||||| ||||| .|||||.||.|..|
BL00960___yfm 820 GAGGCGAAAAAAATTGAGCGCGCCAAAAT-ATTGCAGGCATTTGAGGCGG 868
BSNT_01265___ 869 GAGAGTTTCCTCTTTTATTGGCGACTGACATTGCCGCACGCGGTTTAGAC 918
|||||||..|.||..|..|.|||||.||.||.||.||.|||||..|.|||
BL00960___yfm 869 GAGAGTTCACACTGCTTCTCGCGACCGATATCGCAGCGCGCGGGATCGAC 918
BSNT_01265___ 919 ATTGAAAACCTGCCATACGTGATTCATGCTGATATTCCTGATGAAGATGG 968
||.|||.|.||.||.||.||.||.||.||.|||.|.||..|.|..||.||
BL00960___yfm 919 ATCGAAGATCTCCCTTATGTCATCCACGCCGATTTGCCAAACGTTGAAGG 968
BSNT_01265___ 969 CTATGTCCACAGATCAGGACGAACAGGCCGGGCCGGAAAAGAAGGCAACG 1018
||||.|||||.|.||.|||.|.||.||..|.||.||.||.|||||.|.||
BL00960___yfm 969 CTATATCCACCGGTCGGGAAGGACGGGAAGAGCGGGGAATGAAGGAACCG 1018
BSNT_01265___ 1019 TGCTGAGCCTTGTGA--CGAAATTG--GAGGAATCTAAGCTGAAAAAAAT 1064
||.|.||||||||.| || .|||| ||.||| |.|||||||||..|
BL00960___yfm 1019 TGATCAGCCTTGTCAACCG-CATTGAAGAAGAA---AGGCTGAAAAAGCT 1064
BSNT_01265___ 1065 GGCGAAGAAGCTTGGTGTTGAAC-TGAGTGAAGCTGTGTATGCA----GG 1109
||||||||||||||...||...| |.||.|.|.| |||||||.| |.
BL00960___yfm 1065 GGCGAAGAAGCTTGAAATTCCGCTTCAGCGGATC-GTGTATGAAAGAGGA 1113
BSNT_01265___ 1110 CGGAAAACTGAAGACGAAATAA 1131
||||..|.|||| |.||||
BL00960___yfm 1114 CGGATTATTGAA----AGATAA 1131
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