Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05911 and BL00939

See Amino acid alignment / Visit BSNT_05911 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:59
# Commandline: needle
#    -asequence dna-align/BSNT_05911.1.5803.seq
#    -bsequence dna-align/BL00939___katX.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05911-BL00939___katX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05911-BL00939___katX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05911
# 2: BL00939___katX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1659
# Identity:     883/1659 (53.2%)
# Similarity:   883/1659 (53.2%)
# Gaps:         546/1659 (32.9%)
# Score: 3080.5
# 
#
#=======================================

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat      1 ATGGATCAGCATTCAAACGAGCAGAAATCTGACATGGAGACTGATGATAC     50

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat     51 GTTAACAAACCGGCAGGGCCACCCGATCACAAACAATCAGAATATCAGAA    100

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat    101 CCGTGGGCAACCGGGGGCCATCAACATTGGAGAACTATGATTTCCTGGAG    150

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat    151 AAGATCAGCCACTTTGACAGGGAGAGGGTTCCAGAGCGGGTCGTCCATGC    200

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat    201 CAGGGGAGCCGGAGCGCACGGCTATTTTGAAGCTTATGGGACAGCAGGCG    250

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat    251 ATGAGCCGGTCTCAAAGTATACGAGAGCAAAGCTTTTTCAGGAAAAAGGC    300

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat    301 AAGAGAACCCCGGTGTTTGTCCGTTTTTCGACGGTGACTCACGGGATATC    350

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BL00939___kat    351 CTCACCGGAAACGCTGCGGGATCCCCGCGGATTTGCGGTCAAGTTCTACA    400

BSNT_05911         1 --------------------TTGGTCGGAAACAACCTGAAAATCTTTTTT     30
                                         .||||||||||||||.||||.|||||.|||
BL00939___kat    401 CTGAAGACGGTAACTGGGATCTGGTCGGAAACAACTTGAAGATCTTCTTT    450

BSNT_05911        31 ATCCGCGACCCGCTGAAATTTCCGGATCTTGTACACGCATTTCAGCCTGA     80
                     ||||||||..||.|.||.|||||||||.|..|.||.||||||.||||.||
BL00939___kat    451 ATCCGCGATGCGGTAAAGTTTCCGGATTTAATCCATGCATTTAAGCCGGA    500

BSNT_05911        81 TCCAGTGACAAACATCCAGGATGGTGAACGTATCTTCGATTTCATTTCTC    130
                     .||.||.||.||..|.||||||||.|||.|.|||||.||.|||||||| |
BL00939___kat    501 CCCGGTTACGAATTTGCAGGATGGCGAAAGAATCTTTGACTTCATTTC-C    549

BSNT_05911       131 AA-TCTCCTGAAGCGACACACATGATCACCTTCTTGTTTTCGCCTTGGGG    179
                     || .|.||||||||||..||.||||||||.||.|||||||||||||||||
BL00939___kat    550 AACACGCCTGAAGCGATGCATATGATCACATTTTTGTTTTCGCCTTGGGG    599

BSNT_05911       180 CATTCCGGCCAACTACCGGCAAATGCAGGGTTCAGGCGT--ACATGCCTA    227
                     .||||||||.|||||||||||.||||||||.||.||.||  |||  |.||
BL00939___kat    600 TATTCCGGCGAACTACCGGCAGATGCAGGGGTCCGGGGTGAACA--CGTA    647

BSNT_05911       228 TAAATGGGTGAAT-GAGGAGGGCAAGGCCGTTCTCGTGAAATACCATTTT    276
                     .|||||||||||| .||.||||.|| |||||.||.||||||||.||.|..
BL00939___kat    648 CAAATGGGTGAATCAAGAAGGGGAA-GCCGTGCTTGTGAAATATCACTGG    696

BSNT_05911       277 GAACCGAAGCAGGGCATCCGCAACCTGACACAGAAGGAAGCAGAAGAGAT    326
                     |||||||||||||||||....|||.||||.||.||.||.||.|||||.||
BL00939___kat    697 GAACCGAAGCAGGGCATAAAAAACTTGACGCAAAAAGAGGCGGAAGAAAT    746

BSNT_05911       327 TCAAGGGAAAAACTTTAACCATGCCACACAGGATTTATATGACGCGATTG    376
                     |||.|.|||.||.||.||.||.||||||||||||||||||||.|||||||
BL00939___kat    747 TCAGGCGAAGAATTTCAATCACGCCACACAGGATTTATATGAAGCGATTG    796

BSNT_05911       377 AAAATGGCGATTATCCAGAGTGGGAAGTGTATGCACAAATCATGAGCGAT    426
                     |....||.||||||||.||||||||..|||..|..|||||||||||||||
BL00939___kat    797 AGCGCGGAGATTATCCCGAGTGGGAGCTGTTCGTTCAAATCATGAGCGAT    846

BSNT_05911       427 GATGAGCATCCTGAACTGGACTTTGATCCTCTTGATCCGACA--AAACTG    474
                     ||||||||||||||.||.||.|||||.||.|||||  |||||  ||.|||
BL00939___kat    847 GATGAGCATCCTGAGCTCGATTTTGACCCGCTTGA--CGACACGAAGCTG    894

BSNT_05911       475 TGGTATAAAGACGATTTTCCATGGAAACCGATCGGCAAATTGGTTCTGAA    524
                     |||..|.||||..|.|||||.|||...||..||||||||.|||||.|.||
BL00939___kat    895 TGGCCTGAAGATCAATTTCCTTGGCTGCCTGTCGGCAAAATGGTTTTAAA    944

BSNT_05911       525 CAAAAATCCGGAAAACTACCATGCGGAAGTGGAGCAAGCTTCATTTGGAA    574
                     |||||||||||||.|||||..|.|.|||||.||.|||||..|||||||||
BL00939___kat    945 CAAAAATCCGGAAGACTACTTTACAGAAGTCGAACAAGCGGCATTTGGAA    994

BSNT_05911       575 CGGGGGTGCTTGTCGACGGGCTTGATTTTTCAGACGACAAATTGCTCCAG    624
                     |.|||||.|||||||||||.|||||.|||||.||.||||||.||||.|||
BL00939___kat    995 CAGGGGTTCTTGTCGACGGACTTGACTTTTCCGATGACAAAATGCTTCAG   1044

BSNT_05911       625 GGGCGTACGTTTGCCTACTCTGATACGCAGCGCTACCGTGTAGGCGCAAA    674
                     ||.|||||.|||.|||||||.|||||.|||||||||.|.||.||.||.||
BL00939___kat   1045 GGACGTACTTTTTCCTACTCGGATACACAGCGCTACAGAGTGGGAGCCAA   1094

BSNT_05911       675 TTACCTGCAGCTTCCGATCAACTCGCCGAAAAAGCATGTCGCCACCAACC    724
                     .||.||||||||.||||||||..||||||||||....||.||.|||||.|
BL00939___kat   1095 CTATCTGCAGCTGCCGATCAATGCGCCGAAAAAAAGGGTGGCAACCAATC   1144

BSNT_05911       725 AGGAAGGCGGGCAGATGCAATATCGGGTCGA--TAGAGCAGAAGGA-CAA    771
                     ||...|||||.||||||||.||...||||||  ||| |||.||  | |||
BL00939___kat   1145 AGCGGGGCGGCCAGATGCAGTACAAGGTCGATTTAG-GCAAAA--ATCAA   1191

BSNT_05911       772 AACCCGCACGTCAACTATGAGCCATCCATTATGGGCGGGCTGAAGGAAGC    821
                     |.|||||||.||||||||||.||.||.|..||...|||||||||.|||||
BL00939___kat   1192 AGCCCGCACATCAACTATGAACCTTCAACCATCAACGGGCTGAAAGAAGC   1241

BSNT_05911       822 GAAGCAGGACGGAAAAGACCATACGCCGCATGTCGAAGGTGATGTAAA--    869
                     .||||||||.||.|||||..|.||.||||||||.|||||      |||  
BL00939___kat   1242 AAAGCAGGATGGCAAAGAATACACCCCGCATGTGGAAGG------AAACC   1285

BSNT_05911       870 ----GCGTGAAGCGATTGACAGAACA-AACAACTTCGGACAGGCTGGAGA    914
                         |||.|||...||.||||| .|| ||.||.|||...|||||.||.||
BL00939___kat   1286 TTGTGCGCGAAAGTATCGACAG-GCAGAATAATTTCAAGCAGGCCGGGGA   1334

BSNT_05911       915 AACGTACCGGAGATTT-----ACTGAATTTGAGCGGA-----ACGAATTG    954
                     .||.|||.|| .||||     ||||         |||     ||||..||
BL00939___kat   1335 CACTTACAGG-CATTTCGAAGACTG---------GGAAAAGGACGAGCTG   1374

BSNT_05911       955 ATTACGAATTTGGTGAATACGCTTTCTACGTGCCGAAAAGAAATTCAGGA   1004
                     |||||||||.||||.|||||.|||.|..|||||               ||
BL00939___kat   1375 ATTACGAATCTGGTCAATACACTTGCCCCGTGC---------------GA   1409

BSNT_05911      1005 TCAAATGATTGAGAATTTCACAA---AAGCTGATC------CTGA-----   1040
                     .|||       ||||||   |||   |||.|||||      ||||     
BL00939___kat   1410 CCAA-------AGAATT---CAAACGAAGATGATCGATATGCTGAAGCAA   1449

BSNT_05911      1041 --CTAC--GGAAAACGTGTAGCA--------GAAGGGCTAAAAAAGGTTT   1078
                       |.||  ||||.|.| |.||||        |||||..|||||||.|..|
BL00939___kat   1450 TGCGACAAGGAATATG-GAAGCAGAGTCGAGGAAGGATTAAAAAACGCCT   1498

BSNT_05911      1079 CC-----GAAAACA-ACAGCAACGG--GCCGATCGGCACAACTGAA---A   1117
                     ||     .||.||| .||||  |||  |||||||||   |.|.|||   .
BL00939___kat   1499 CCAGCCAAAATACATCCAGC--CGGGAGCCGATCGG---AGCAGAAGGCG   1543

BSNT_05911      1118 CGGAACAGGCTGCAAAGCAGGCTGAACAGGAGAGCCATCCATCT---GAT   1164
                     |.|||.|.||..|.|..|||||.|||.|..|..|.||   .|||   ||.
BL00939___kat   1544 CCGAAGATGCCCCGAGACAGGCGGAAGAAAAAGGGCA---CTCTCAAGAC   1590

BSNT_05911      1165 CCGTATTAA   1173
                     |||||||||
BL00939___kat   1591 CCGTATTAA   1599


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