Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05926 and BL00927

See Amino acid alignment / Visit BSNT_05926 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05926___yxkO.1.5803.seq
#    -bsequence dna-align/BL00927___yxkO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05926___yxkO-BL00927___yxkO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05926___yxkO-BL00927___yxkO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05926___yxkO
# 2: BL00927___yxkO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     576/914 (63.0%)
# Similarity:   576/914 (63.0%)
# Gaps:         145/914 (15.9%)
# Score: 1665.0
# 
#
#=======================================

BSNT_05926___      1 ATG----------AATGTTCC-ATATTGGACGGAAGA--GCATGTAAGGG     37
                     |||          ||| |.|| ||| ||||||.||||  ||.|| |||||
BL00927___yxk      1 ATGTCTGCAGAACAAT-TGCCGATA-TGGACGAAAGACTGCGTG-AAGGG     47

BSNT_05926___     38 C-CACGCTTCCTGAAA----GAGATGCGGAGAGCCATAAAGGCACGTACG     82
                     | ||   ||.|.||||    ||.||   ||.||.||||||||.||.||.|
BL00927___yxk     48 CTCA---TTGCCGAAAAGGGGAAAT---GATAGTCATAAAGGAACTTATG     91

BSNT_05926___     83 GTAC--GGCTTTGCTGCTGGCTGGAAGTGACGACATGCCGGGGGCAGCGC    130
                     |.||  |.||||  ||||.||.|||||.||.||.||||||||.||.||.|
BL00927___yxk     92 GAACCGGCCTTT--TGCTCGCGGGAAGCGATGATATGCCGGGAGCGGCTC    139

BSNT_05926___    131 TGCTTGCAGGGCTTGGGGCCATGCGGAGCGGTCTCGGCAAGCTTGTCATC    180
                     |.||||||||..|.|||||.||||||||||||||.||.||||||||||||
BL00927___yxk    140 TCCTTGCAGGAATCGGGGCGATGCGGAGCGGTCTAGGAAAGCTTGTCATC    189

BSNT_05926___    181 GGTACATCAGAAAGCGTAATCCCGCTAATTGTTCCTGTTTTGCCCGAGGC    230
                     ||.||.|..|..||.|..||.|||||.||..|.||.|||.|.||.|||||
BL00927___yxk    190 GGAACGTGCGGGAGTGCGATTCCGCTGATCCTCCCCGTTCTTCCTGAGGC    239

BSNT_05926___    231 GACCTATTGGCGTGACGGCTGGAAAAAGGCGGCGGATGCTC-----AGCT    275
                     |||.||||||||.||||||....|||||||||||     ||     ||.|
BL00927___yxk    240 GACGTATTGGCGGGACGGCGCCGAAAAGGCGGCG-----TCAGGCGAGAT    284

BSNT_05926___    276 TGAAGAGACGTACCGGGCCATTGCCATCGGACCGG-------GCCTTCCG    318
                     ||..||..|.||||||||.|||||.|||||.||.|       ||||| ||
BL00927___yxk    285 TGCCGAACCTTACCGGGCGATTGCGATCGGGCCTGGGCTGCCGCCTT-CG    333

BSNT_05926___    319 CAAA------------CGG---AAAGCGTACAGCAGGCAGTCGATCATGT    353
                     ||||            |||   ||||||||                    
BL00927___yxk    334 CAAATGACTGAGCAAGCGGTTCAAAGCGTA--------------------    363

BSNT_05926___    354 GCTTA-CGGCTGATTGTCCTGTTATTTTGGATGCCGGAGCGCTGGCGAAG    402
                       ||| ||...||.||.||.|||.|..|.|||||.||.||.||..|.||.
BL00927___yxk    364 --TTAGCGAAAGACTGCCCGGTTGTGCTTGATGCGGGTGCTCTTTCAAAA    411

BSNT_05926___    403 CGCACATATCCGAAACGAGAGGCCCCCGTCATCCTCACGCCGCACCCGGG    452
                     ||..|.||||...||||.||.||.||.||..|..|.||||||||.|||||
BL00927___yxk    412 CGATCGTATCATGAACGGGAAGCGCCGGTGGTATTAACGCCGCATCCGGG    461

BSNT_05926___    453 CGAGTTTTCCCGAATGACAGGGATGCC----CGTGAACGAATTGCAGAAA    498
                     |||.|||||...|||||||||..||.|    ||.||   |||||.||.||
BL00927___yxk    462 CGAATTTTCGAAAATGACAGGCTTGTCCATTCGAGA---AATTGAAGCAA    508

BSNT_05926___    499 AAAAGAGCG-----------GAATATGCAAAGGAATGGGCGGCTCAGCTG    537
                     |...|..||           ||.|||||..|||||         ||    
BL00927___yxk    509 ACCGGGCCGGTTATGCTCGAGATTATGCGGAGGAA---------CA----    545

BSNT_05926___    538 CAG--ACTGTCATTGTGTTAAAAGGAAACCAAACCGTCATCGCGTTTCCT    585
                      ||  |.|..|.||||.||.|||||.||..||||..||.|.||.||.||.
BL00927___yxk    546 -AGGTATTACCCTTGTCTTGAAAGGCAATGAAACGATCGTTGCTTTCCCC    594

BSNT_05926___    586 GATGGAGACTGCTGGCTCAATCCAACCGGAAACGGGGCGCTCGCCAAGGG    635
                     ||.||.||.||||||...|||..|||.|||||.||||||||.||.|||||
BL00927___yxk    595 GACGGCGAGTGCTGGAGGAATGTAACGGGAAATGGGGCGCTGGCAAAGGG    644

BSNT_05926___    636 CGGAACCGGTGACACACTGGCGGGCATGATATTGGGGATGCTCTGCTGCC    685
                     .|||||.||.||.||..|..|.||.|||.|..|.||||||||.|||||.|
BL00927___yxk    645 AGGAACGGGGGATACGTTAACAGGTATGCTTCTCGGGATGCTGTGCTGTC    694

BSNT_05926___    686 ATGAAGA--TCCAAAGCACGCCATATTAAACGCGGTCTATTTGCATGGTG    733
                     ||| |||  ||.|.|| |.||..|..|.||.||.|||.|.|||||.||.|
BL00927___yxk    695 ATG-AGAATTCGAGAG-AAGCGGTGCTGAATGCTGTCCACTTGCACGGCG    742

BSNT_05926___    734 CGTGCGCCGA-GCTCTGGAC--GGACGAGCACTCCGCTCATACGTTGCTC    780
                     |.||.||.|| || .|||||  .|||.||  .||.||||||.||.|.||.
BL00927___yxk    743 CATGTGCGGACGC-ATGGACAAAGACCAG--ATCGGCTCATGCGCTTCTT    789

BSNT_05926___    781 GCTCATGAGCTATCTGACATCCTGCC-CCGCGTGTGGAAA-CG-AT----    823
                     ||.|||||.||.||.||..|.||||| .|| ||.|||||| || ||    
BL00927___yxk    790 GCGCATGAACTTTCCGATCTGCTGCCAACG-GTATGGAAAGCGTATGAGG    838

BSNT_05926___    824 -TTGAA-----TGA    831
                      |.|||     |||
BL00927___yxk    839 ATGGAAATAAGTGA    852


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05926 and BL00927

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
