Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00353 and BL00918
See
Amino acid alignment /
Visit
BSNT_00353 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_00353___ndhF.1.5803.seq
# -bsequence dna-align/BL00918___ndhF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00353___ndhF-BL00918___ndhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00353___ndhF-BL00918___ndhF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00353___ndhF
# 2: BL00918___ndhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1721
# Identity: 965/1721 (56.1%)
# Similarity: 965/1721 (56.1%)
# Gaps: 391/1721 (22.7%)
# Score: 2362.0
#
#
#=======================================
BSNT_00353___ 1 ATGTTAGTTTCGCTGAGTTTGTCATCATTATTAACATTATTTTTTATTAT 50
|||||.|.|..||| || |||.||||||.|
BL00918___ndh 1 ATGTTTGATATGCT-AG---------------------ATTCTTTATTTT 28
BSNT_00353___ 51 GCTTATGGCTTCTGGGATTAGTGGACTATTGTTTTTACATCCGCGAGTAC 100
| .|||..|.|| ||||| |||| .|
BL00918___ndh 29 G---------GCTGAAAATA-----------TTTTT-----CGCG---TC 50
BSNT_00353___ 101 CCTTGAGTTTTGTTCGCATTCA---TATTGGGATCTTGGCTT-------- 139
.||||.|.||||||.| |||| .|.|| ||.|.|.|
BL00918___ndh 51 GCTTGCGCTTTGTTTG--TTCAGCGCACTG----CTCGTCCTGAATCGAA 94
BSNT_00353___ 140 ---TACCACTTTTGGTTTCCTTACTGATTCTTGCCAATA----------- 175
|.||| ||||..|...|||.|||||.||||||.|
BL00918___ndh 95 AGGTTCCA---TTGGCATATGTACGGATTCATGCCAAAATCATCGCCCTG 141
BSNT_00353___ 176 ------------GTGGTG-------TGAGT----GGAAATGTTGGCC--- 199
|.|.|| ||| | |.||||...||.|
BL00918___ndh 142 CCTCCGCTTGCCGCGCTGGCAGCATTGA-TAACGGCAAATCCCGGGCAGG 190
BSNT_00353___ 200 ---------CTTGGCACTTAGATTC-CTTAGCTTGTTTAATGACTTTCTT 239
||||||.|||.||||| ||| |||||..|.||..|.||.||
BL00918___ndh 191 CTGAAGCTTCTTGGCGCTTGGATTCGCTT-GCTTGGCTGATCGCCTTGTT 239
BSNT_00353___ 240 TGTTCTTG-CAATTGGATTCATCATTCAGCGTTTTTCTGTACGTTACTTA 288
|| ||||| |.||.||.||||||.|.|||||.|..|||||.||.||.|||
BL00918___ndh 240 TG-TCTTGACTATCGGCTTCATCGTCCAGCGCTACTCTGTCCGGTATTTA 288
BSNT_00353___ 289 ATGGGGGATCGATCTTATCGAAAATATTTTACGCTTTTTACTTTCACAAC 338
.|.||.||.||.||.||.||.||||.||||..|||..|.||..|.||.||
BL00918___ndh 289 TTCGGCGACCGCTCCTACCGTAAATTTTTTGTGCTGCTGACGCTTACGAC 338
BSNT_00353___ 339 AGGAGCTGCTTCAATG-ACATGGTTAAGTGGTGATCTCCGCTTGATGGTT 387
|||||..||||| ||| .|.|||.|.|..|.||||||.||||.|.|..||
BL00918___ndh 339 AGGAGGAGCTTC-ATGCGCCTGGCTGAACGATGATCTTCGCTGGCTCCTT 387
BSNT_00353___ 388 CTAT-TTTGGGGAGCGACTCTTGTTGGATTAACCTTACTTATTAGGTTAA 436
.||| .|.|||||.| ||.||..|.||.||.||....||.||..|.||||
BL00918___ndh 388 TTATGCTGGGGGATC-ACGCTGCTCGGCTTGACTGCGCTAATCGGCTTAA 436
BSNT_00353___ 437 ACAGTGCTTGGCAAGTGGCTAGTGAA----GCAGCCAAAATTT-----CT 477
||||.||.|||||.|.||| ||| ||.|| ||| |.
BL00918___ndh 437 ACAGCGCGTGGCAGGCGGC----GAAAAATGCCGC-----TTTGTATGCG 477
BSNT_00353___ 478 GGACGGTTATTTTTGTTAAGTTGGTTTTCTTTGTTTTTTGCGA------- 520
||.|||.|.|||..|.|.||.||| .|.||||
BL00918___ndh 478 GGCCGGATCTTTGCGCTCAGCTGG------------CTGGCGATAGCAGC 515
BSNT_00353___ 521 TGACG-----TGGCTTTTTCATGCCACAGGTCAATGGCAGTTATCATTGG 565
||.|| |||||.|.||.|.|.||.||.||.||||..|||||||..|
BL00918___ndh 516 TGCCGCTCTTTGGCTGTCTCTTTCGACGGGACACTGGCGATTATCATCCG 565
BSNT_00353___ 566 TTGTAACAAATGAAA-----GTTTAGCTGGGCTGGGAGAATGGGGGAGAA 610
...||.|..|.|||| ||..||||..||| .|||||.||.||
BL00918___ndh 566 CCATAGCGGAAGAAAGCCTTGTACAGCTCAGCT-----CATGGGAGAAAA 610
BSNT_00353___ 611 CAGGGAT-----TCAGCTATTGATTGTATTAGCAGTGATTATTCCTGCAG 655
|.||||| || ||..|.||| |||.|.|||||.||||||||.|
BL00918___ndh 611 CCGGGATCGGCCTC--CTCGTCATT---TTAACGGTGATGATTCCTGCGG 655
BSNT_00353___ 656 CTCAATGGCCGTTCCAAAGATGGTTGGTTGAGTCTATT-----GTTGCTC 700
|.||.||||||||.| ||.|||||.|| .||.||| .|.||||
BL00918___ndh 656 CACAGTGGCCGTTTC----ATCGTTGGCTG-CTCGATTCAGCAATCGCTC 700
BSNT_00353___ 701 CAACCCCTGTTTCTGCAATTATGCATGCAGGTTTAGTAAATGCGGGAGGA 750
|.||.||.|||||.|||.|.|||||.||.||..|.|||||||..||.||.
BL00918___ndh 701 CGACTCCCGTTTCCGCAGTCATGCACGCCGGACTTGTAAATGTAGGCGGC 750
BSNT_00353___ 751 ATAATACTAACTCGATTTTCACCTCTAT-TTCA-TGGTG--GTATCGCTT 796
.|.||.||.|||||.|||.||| |.|| |||| .|||| |||..||
BL00918___ndh 751 GTCATGCTGACTCGTTTTGCAC--CGATGTTCAGCGGTGATGTACTGC-- 796
BSNT_00353___ 797 CGATTATCTTACTTCTGCTTGCTA-------GCATTTCTGTATTGATTGG 839
|.|||| ||||||||| || .|.||||.||.|||.|.||
BL00918___ndh 797 -----AGCTTA-TTCTGCTTG-TACCCGCCGTCCTTTCCGTCTTGCTCGG 839
BSNT_00353___ 840 AACTGGAATTAGTTTAGTCCAGGTTGATTATAAACGTCAGTTAGTAGGCT 889
|||.||.||.|...|.|||||....||.||.||.||.|||.|.|.||..|
BL00918___ndh 840 AACGGGCATGATGATCGTCCAAACGGACTACAAGCGGCAGCTCGCAGCTT 889
BSNT_00353___ 890 CCACGATTGGACAAATGGGGTTTATGCTCATTCAGTGTGCATTAGGCGCC 939
|.|||.|.|..||.|||||.|||||||||.|.||.||.||||||||.|||
BL00918___ndh 890 CAACGGTCGCGCAGATGGGTTTTATGCTCGTCCAATGCGCATTAGGGGCC 939
BSNT_00353___ 940 TATATAGCAGCCATTATTCATCTTATTTTACATGGTTTATTCAAAGCTAC 989
|||||.||.||..|||||||.||.|||||.||.||..|.||||||||..|
BL00918___ndh 940 TATATTGCGGCTGTTATTCACCTCATTTTGCACGGCCTGTTCAAAGCCGC 989
BSNT_00353___ 990 GTTGTTTCTACAAGCTGGTTCAGCAGTAGGGCGTCATGAAGTATTGGCTC 1039
..|.||.||.|||||.||.|||||.||..|.|||.||||| |.|.||
BL00918___ndh 990 CCTTTTCCTGCAAGCCGGATCAGCGGTGCGCCGTTATGAA----TCGTTC 1035
BSNT_00353___ 1040 GCA-CTAA---TGAAAGAACATC-CTATTTATGGGTCATGGCTGGTCGGA 1084
||| |||| .|..|||.|..| || |||.|||..||||
BL00918___ndh 1036 GCATCTAAACCGGGCAGACCGGCTCT-TTTTTGGAACATG---------- 1074
BSNT_00353___ 1085 TTTTATCCTTAGTAATAGGCG------TTGCTTTTTGGCTCG-------- 1120
||||||| |||||.||...||||
BL00918___ndh 1075 --------------ATAGGCGGCGTCTTTGCTCTTGCTCTCGTCATCGGA 1110
BSNT_00353___ 1121 --CTGCTCCT-------GGA-GAGGTATATCAATTCATTAGTGCGCTGAT 1160
|||..||| ||| ||.|..||||||||.||.||.||.||..|
BL00918___ndh 1111 ATCTGGGCCTCAGCTACGGACGATGGCTATCAATTGATCAGCGCCCTTGT 1160
BSNT_00353___ 1161 CTTAGGGTGGTCATTGTCCGTTTCTTGGAATCAGCTTGTCGC------TT 1204
.|||||.|||.||.|||.|.||.||||||..|||||||||.| ||
BL00918___ndh 1161 TTTAGGCTGGGCACTGTTCATTGCTTGGAGGCAGCTTGTCACAGCCAATT 1210
BSNT_00353___ 1205 TTGGAGAGGGTCGAATTGGCCGAATTGCCGGCTTAACT----GTTTTAGG 1250
..||| .|.|||..| ||||||||||| ||| .|||||..
BL00918___ndh 1211 ACGGA-CGCGTCACA-----CGAATTGCCGG----ACTTTTCATTTTAAC 1250
BSNT_00353___ 1251 AGGAGCAGCCCTCGTATATTTT----ATCATTCATAACCTTTTCTATAAG 1296
|||.||..|.|||| ..|| |||||||||..|.||| ||.|.|
BL00918___ndh 1251 AGGGGCTTCACTCG----CGTTCGCCATCATTCATTCCGTTT--TACACG 1294
BSNT_00353___ 1297 TGGCT------GCATACAACCATTTTTCAAAG-----TGTTCAACCTCCA 1335
|||| |.||.| |.||..|.|| ||..|..|||.||
BL00918___ndh 1295 -GGCTCCTGAAGGATGC-----TGTTGTACAGGGGGCTGAGCCGCCTGCA 1338
BSNT_00353___ 1336 ATGTCAGCTGTCATGATTGTCGTATGTC-TCTTATTATTTGGCAGTGCTT 1384
|||.|.||.|| .|||.||...||| |.||.|||...||||||||
BL00918___ndh 1339 ATGGCGGCCGT----TTTGACGGCAGTCGTTTTGTTAGCCGGCAGTGC-- 1382
BSNT_00353___ 1385 TAGGTACATGGGTTGCTCGTT-ATCGTTCTTCCGTTTTTT------TCGC 1427
||...||.|||| |||||||..|.|...||| || |
BL00918___ndh 1383 ---------GGCCGGCGCGTTGATCGTTCGGCAGCGCTTTGCATGGTC-C 1422
BSNT_00353___ 1428 GGTGCTCTATCTTT--GGTTAGTTCGATTA--GGTGAAGCAAAACCA--- 1470
||.||.||.|.||| |..|.|| ||..| ||||||.| |||
BL00918___ndh 1423 GGCGCACTTTATTTACGTCTTGT--GAAAACGGGTGAACC----CCATTT 1466
BSNT_00353___ 1471 --AAGTCAGTAG-AGAGTCAC--CCAGACTACCTTAAACAATATATT--- 1512
|| ||.||.| ||| || ||..|.||.|||.|.||||||.||
BL00918___ndh 1467 CGAA-TCGGTCGAAGA---ACGGCCGAATTATCTTGACCAATATCTTACT 1512
BSNT_00353___ 1513 ---------------TCATAA 1518
||||.|
BL00918___ndh 1513 CAGGGAGGTCGCCAATCATGA 1533
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.