Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00355 and BL00916

See Amino acid alignment / Visit BSNT_00355 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:01
# Commandline: needle
#    -asequence dna-align/BSNT_00355___ybcF.1.5803.seq
#    -bsequence dna-align/BL00916___ybcF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00355___ybcF-BL00916___ybcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00355___ybcF-BL00916___ybcF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00355___ybcF
# 2: BL00916___ybcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 628
# Identity:     314/628 (50.0%)
# Similarity:   314/628 (50.0%)
# Gaps:         221/628 (35.2%)
# Score: 672.0
# 
#
#=======================================

BSNT_00355___      1 ATGAATGTAATCCAAAATAAAAAAGTA---TTGTTTTTGACGGATATTGA     47
                         |||.||  .||||.||||||.||   .||.||.|  |||| ||.||
BL00916___ybc      1 ----ATGGAA--GAAAACAAAAAAATACTCATGATTAT--CGGA-ATGGA     41

BSNT_00355___     48 -AAACGGTTTG--GAGCCTATTTTACAAGAAGCAACTAACACTTCTG-CA     93
                      ||||.|.|||  .||.|.||.|..|..|.|||||.||    |||.| |.
BL00916___ybc     42 GAAACAGCTTGAACAGACCATCTGCCGGGCAGCAAATA----TTCAGCCG     87

BSNT_00355___     94 GAGAATATGTTGAC--------TATACAAAGC-TATGGTGCCAG-TATTT    133
                     |||        |||        |.||.||||| |.|  |.||.| |||||
BL00916___ybc     88 GAG--------GACGCCCTCGTTTTAAAAAGCGTCT--TCCCTGATATTT    127

BSNT_00355___    134 CACATCCTTATGGAGAAATCATGAGGTCTGTTATTTTTGCGATTTACCA-    182
                     ||||.||.||.||.||..||||||||   |.|||..|..|..||..||| 
BL00916___ybc    128 CACAGCCCTACGGTGATTTCATGAGG---GATATCATCACCCTTGTCCAC    174

BSNT_00355___    183 -GGAA-GATGTTGAGGAGATTT---TTGT--------AGTAGGAACAAAA    219
                      |||| .|.|..||.||.||.|   ||||        |.||.||||    
BL00916___ybc    175 CGGAACAAAGCGGAAGAAATCTGGATTGTCCGCGACAAATACGAAC----    220

BSNT_00355___    220 GACAAGAAGACTTCCGCAGGTAATGGA-------CTAAC---TCAACTTG    259
                               |.||.||||   |||.|       ||.||   |.||.|.|
BL00916___ybc    221 ----------CATCGGCAG---ATGAAGATATTTCTGACCTTTTAAATAG    257

BSNT_00355___    260 AAACAA-----TGAAAGATAAAATACAAACATTGGATTATCTCTTTCAAA    304
                     |.||||     |.|||||||.|||.|||||.||.||.||.||.||.||||
BL00916___ybc    258 AGACAAAGATTTAAAAGATAGAATGCAAACTTTAGAGTACCTTTTCCAAA    307

BSNT_00355___    305 ATTGCAAGCCTGAATTTTTAGGTGGTACG---------GTCGATGAATGG    345
                     |.||||..||.|||||         ||||         .|.|||||||||
BL00916___ybc    308 ACTGCAGTCCGGAATT---------TACGCAAGGCAGCATTGATGAATGG    348

BSNT_00355___    346 CT------AAATGAAAA--TAGC----AGTG-ACACCATTGAAAAAAGTG    382
                     ||      .|..|||||  |.||    .||| ||       |||||||.|
BL00916___ybc    349 CTGTCACCGAGCGAAAACGTGGCCGAAGGTGTAC-------AAAAAAGCG    391

BSNT_00355___    383 TTGATATGATTCGACATC---------------ATCCCCTAGTGC-CGTC    416
                     |.|       .||.||||               |||||.|  ||| ||||
BL00916___ybc    392 TCG-------CCGCCATCCGCAGGCACCCGTTAATCCCTT--TGCACGTC    432

BSNT_00355___    417 ATATGTTAAAGTTAGAGGTTTATTCGTTCATC-ATAAGGATGGAAAACCC    465
                            |||||.|.|||.|  |||  |.||| |||              
BL00916___ybc    433 -------AAAGTGAAAGGAT--TTC--TAATCGATA--------------    457

BSNT_00355___    466 TCAATCG-------TGGAGGTTCCTGATG-TTAAAACA-----GGTCAAG    502
                       |||||       .|||.||   |||.| ||.|||||     ||   ||
BL00916___ybc    458 --AATCGGTTTTAACGGAAGT---TGAAGCTTTAAACAAAAACGG---AG    499

BSNT_00355___    503 CC--TTACCTGATCATTGCTTGTCATGA    528
                     ||  |||.                    
BL00916___ybc    500 CCCGTTAA--------------------    507


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