Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00355 and BL00916
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:01
# Commandline: needle
# -asequence dna-align/BSNT_00355___ybcF.1.5803.seq
# -bsequence dna-align/BL00916___ybcF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00355___ybcF-BL00916___ybcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00355___ybcF-BL00916___ybcF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00355___ybcF
# 2: BL00916___ybcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 628
# Identity: 314/628 (50.0%)
# Similarity: 314/628 (50.0%)
# Gaps: 221/628 (35.2%)
# Score: 672.0
#
#
#=======================================
BSNT_00355___ 1 ATGAATGTAATCCAAAATAAAAAAGTA---TTGTTTTTGACGGATATTGA 47
|||.|| .||||.||||||.|| .||.||.| |||| ||.||
BL00916___ybc 1 ----ATGGAA--GAAAACAAAAAAATACTCATGATTAT--CGGA-ATGGA 41
BSNT_00355___ 48 -AAACGGTTTG--GAGCCTATTTTACAAGAAGCAACTAACACTTCTG-CA 93
||||.|.||| .||.|.||.|..|..|.|||||.|| |||.| |.
BL00916___ybc 42 GAAACAGCTTGAACAGACCATCTGCCGGGCAGCAAATA----TTCAGCCG 87
BSNT_00355___ 94 GAGAATATGTTGAC--------TATACAAAGC-TATGGTGCCAG-TATTT 133
||| ||| |.||.||||| |.| |.||.| |||||
BL00916___ybc 88 GAG--------GACGCCCTCGTTTTAAAAAGCGTCT--TCCCTGATATTT 127
BSNT_00355___ 134 CACATCCTTATGGAGAAATCATGAGGTCTGTTATTTTTGCGATTTACCA- 182
||||.||.||.||.||..|||||||| |.|||..|..|..||..|||
BL00916___ybc 128 CACAGCCCTACGGTGATTTCATGAGG---GATATCATCACCCTTGTCCAC 174
BSNT_00355___ 183 -GGAA-GATGTTGAGGAGATTT---TTGT--------AGTAGGAACAAAA 219
|||| .|.|..||.||.||.| |||| |.||.||||
BL00916___ybc 175 CGGAACAAAGCGGAAGAAATCTGGATTGTCCGCGACAAATACGAAC---- 220
BSNT_00355___ 220 GACAAGAAGACTTCCGCAGGTAATGGA-------CTAAC---TCAACTTG 259
|.||.|||| |||.| ||.|| |.||.|.|
BL00916___ybc 221 ----------CATCGGCAG---ATGAAGATATTTCTGACCTTTTAAATAG 257
BSNT_00355___ 260 AAACAA-----TGAAAGATAAAATACAAACATTGGATTATCTCTTTCAAA 304
|.|||| |.|||||||.|||.|||||.||.||.||.||.||.||||
BL00916___ybc 258 AGACAAAGATTTAAAAGATAGAATGCAAACTTTAGAGTACCTTTTCCAAA 307
BSNT_00355___ 305 ATTGCAAGCCTGAATTTTTAGGTGGTACG---------GTCGATGAATGG 345
|.||||..||.||||| |||| .|.|||||||||
BL00916___ybc 308 ACTGCAGTCCGGAATT---------TACGCAAGGCAGCATTGATGAATGG 348
BSNT_00355___ 346 CT------AAATGAAAA--TAGC----AGTG-ACACCATTGAAAAAAGTG 382
|| .|..||||| |.|| .||| || |||||||.|
BL00916___ybc 349 CTGTCACCGAGCGAAAACGTGGCCGAAGGTGTAC-------AAAAAAGCG 391
BSNT_00355___ 383 TTGATATGATTCGACATC---------------ATCCCCTAGTGC-CGTC 416
|.| .||.|||| |||||.| ||| ||||
BL00916___ybc 392 TCG-------CCGCCATCCGCAGGCACCCGTTAATCCCTT--TGCACGTC 432
BSNT_00355___ 417 ATATGTTAAAGTTAGAGGTTTATTCGTTCATC-ATAAGGATGGAAAACCC 465
|||||.|.|||.| ||| |.||| |||
BL00916___ybc 433 -------AAAGTGAAAGGAT--TTC--TAATCGATA-------------- 457
BSNT_00355___ 466 TCAATCG-------TGGAGGTTCCTGATG-TTAAAACA-----GGTCAAG 502
||||| .|||.|| |||.| ||.||||| || ||
BL00916___ybc 458 --AATCGGTTTTAACGGAAGT---TGAAGCTTTAAACAAAAACGG---AG 499
BSNT_00355___ 503 CC--TTACCTGATCATTGCTTGTCATGA 528
|| |||.
BL00916___ybc 500 CCCGTTAA-------------------- 507
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