Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05876 and BL00915
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence dna-align/BSNT_05876___sacY.1.5803.seq
# -bsequence dna-align/BL00915___sacY.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05876___sacY-BL00915___sacY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05876___sacY-BL00915___sacY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05876___sacY
# 2: BL00915___sacY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 860
# Identity: 637/860 (74.1%)
# Similarity: 637/860 (74.1%)
# Gaps: 34/860 ( 4.0%)
# Score: 2270.5
#
#
#=======================================
BSNT_05876___ 1 ATGAAAATTAAAAGAATCTTAAATCATAATGCTATCGTCGTAAAGGATCA 50
||||||.|.||||.|||||||||..|.|||||..|||||||||||||||.
BL00915___sac 1 ATGAAAGTAAAAAAAATCTTAAACAACAATGCGCTCGTCGTAAAGGATCG 50
BSNT_05876___ 51 AAATGAAGAGAAGATTCTCTT-GGGTGCAGGAATTGCGTTTAACAAAAAG 99
....||.||.|||||..|.|| |||| |.|||||.||.|||.|.||||||
BL00915___sac 51 CGGCGAGGAAAAGATCGTATTAGGGT-CCGGAATCGCATTTCAAAAAAAG 99
BSNT_05876___ 100 AAGAATGATATTGTCGATCCG-TCAAAAATAGAAAAAACCTTTATCAGAA 148
||||||||||||||||| |.| ||.|||||.|||||||..||..|.|..|
BL00915___sac 100 AAGAATGATATTGTCGA-CAGATCTAAAATTGAAAAAATATTCGTGATGA 148
BSNT_05876___ 149 AAGATACACCTGACTATAAGCAGTTCGAAGAGATTTTAGAAACATTGCCT 198
|||||.||.|.||.||....||.|||||.|||||.|||.||||||||||.
BL00915___sac 149 AAGATTCATCAGAATACCGCCAATTCGAGGAGATCTTAAAAACATTGCCG 198
BSNT_05876___ 199 GAAGACCACATTCAGATTTCTGAGCAAATTATCTCTCATGCCGAAAAAGA 248
|||||.||.||||||.|..|.|||.|.|||||.|||.||||.||||||||
BL00915___sac 199 GAAGATCATATTCAGGTGGCGGAGGATATTATTTCTTATGCGGAAAAAGA 248
BSNT_05876___ 249 GCTGAACATCAAAATCAACGAGCGCATTCATGTCGCTTTTTCAGACCATC 298
|||....|||||||||||.|||||.||.||||||||.||||||||.|||.
BL00915___sac 249 GCTCGGGATCAAAATCAATGAGCGAATCCATGTCGCCTTTTCAGATCATT 298
BSNT_05876___ 299 TTTCTTTTGCGATTGAACGCCTGAGCAATGGGATGGTTATCAAAAATCCG 348
|.||.||.|||||.|||||..|.|||||.||.|||||.||.|||||||||
BL00915___sac 299 TATCCTTCGCGATAGAACGGTTAAGCAAGGGAATGGTCATTAAAAATCCG 348
BSNT_05876___ 349 CTGCTGAATGAAATCAAAGTCCTTTATCCAAAGGAGTTCCAGATCGGCTT 398
|||||..|.|||.||||||||||.||..|.||.||.||.||.||||||..
BL00915___sac 349 CTGCTTCAAGAAGTCAAAGTCCTCTACACGAAAGAATTTCAAATCGGCCG 398
BSNT_05876___ 399 ATGGGCCAGAACACTGATTAAAGATAAACTGGGGATTCACATTCCTGATG 448
.|||||.|...|.||.||||||||.||.|||..|||..|.||.||.||.|
BL00915___sac 399 CTGGGCAAAGGCTCTCATTAAAGAAAAGCTGAAGATCGATATCCCCGAGG 448
BSNT_05876___ 449 ATGAAATCGGCAATATCGCCATGCATATCCACACAGCAAGAAAC-AATGC 497
|||||.|||.||||||.||..||||||||||||||||.| |||| ||.||
BL00915___sac 449 ATGAAGTCGCCAATATTGCGCTGCATATCCACACAGCCA-AAACAAACGC 497
BSNT_05876___ 498 CGGCGATATGACACAAACGCTTGATATTACAACAATGATCCGTGATATTA 547
.||.|||||||||.|||||||.|||.|.|||||.||||||...|||||||
BL00915___sac 498 GGGAGATATGACAAAAACGCTCGATCTCACAACGATGATCAAGGATATTA 547
BSNT_05876___ 548 TCGAGATTATCG-----AAATTCAACTGTCTATTAATATCGTTGAAGATA 592
|||||||.|||| |||.||||| |||||.||....||.||.|
BL00915___sac 548 TCGAGATCATCGAAAACAAACTCAAC-----ATTAAAATAAAGGATGAGA 592
BSNT_05876___ 593 CCATCTCTTATGAACGGCTTGTGACCCATCTCCGCTTTGCCATTCAGCAT 642
|.||.||.|||||..|||||||.|.|||||||||.||.||||||||||||
BL00915___sac 593 CGATTTCGTATGAGAGGCTTGTCAACCATCTCCGTTTCGCCATTCAGCAT 642
BSNT_05876___ 643 ATCAAAGCAGGCGAATCCATTTACGAGCTGGACGCAGAAATGATCGACAT 692
|||.|..|.||.||..|..|||||||..||||.|..||.||||||..|.|
BL00915___sac 643 ATCGAGTCGGGAGAGACATTTTACGAAATGGATGGTGAGATGATCAGCCT 692
BSNT_05876___ 693 CATTAAAGAGAAGTTTAAGG--ATGCCTTCCTGTGTGC-CCTAAG-CATC 738
|||||||.|||||||| || |.||.|| |.||||| |..||| .|||
BL00915___sac 693 CATTAAAAAGAAGTTT--GGACAAGCGTT--TATGTGCGCAGAAGAAATC 738
BSNT_05876___ 739 GGCACCTTTGTGAAGAAGGAATACGGCTTTGAGTTTCCTGAAAAAGAATT 788
||..|.|||||||||..|||.||.||||||||.|||||.||||||||..|
BL00915___sac 739 GGGGCATTTGTGAAGCGGGAGTATGGCTTTGAATTTCCGGAAAAAGAGCT 788
BSNT_05876___ 789 GTGCTACATCGCCATGCATATTCAGCGGTTCTACCAACGGT---CAGTCG 835
|||||||||..||||||||||||||.|.||.||.||.|||| |.||||
BL00915___sac 789 GTGCTACATTACCATGCATATTCAGAGATTTTATCAGCGGTCTGCTGTCG 838
BSNT_05876___ 836 CACGCTGA-- 843
||.
BL00915___sac 839 -----TGTAA 843
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