Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02942 and BL00899
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02942.1.5803.seq
# -bsequence dna-align/BL00899.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02942-BL00899.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02942-BL00899.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02942
# 2: BL00899
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity: 348/1267 (27.5%)
# Similarity: 348/1267 (27.5%)
# Gaps: 785/1267 (62.0%)
# Score: 857.0
#
#
#=======================================
BSNT_02942 0 -------------------------------------------------- 0
BL00899 1 TTGAAAAAAACTAACACCATCCGTTATTTAACGAGTGTTTTACTATTGTT 50
BSNT_02942 0 -------------------------------------------------- 0
BL00899 51 TCTATTAACCGGATGCTGGAGCAGCCACGAAATTGAAGAGCTCGGCTTAA 100
BSNT_02942 0 -------------------------------------------------- 0
BL00899 101 CATTTGCAATGGGGATTGACAAAGGCGAGGAAACCGAACTTGAAAAAAAG 150
BSNT_02942 0 -------------------------------------------------- 0
BL00899 151 TTTGACAAAGTTGGGGGCGATTATCCGAAAAAAGACCGGATCACGATGAT 200
BSNT_02942 0 -------------------------------------------------- 0
BL00899 201 CTATCAATACGTGAACGAACAAGCAGCCGGTTCAAAATCGATTGGAGGAA 250
BSNT_02942 0 -------------------------------------------------- 0
BL00899 251 GCACTGATCAAAAAACGTATATCAACGTTTATGAAACTGGAGACTCGCTT 300
BSNT_02942 0 -------------------------------------------------- 0
BL00899 301 CAGCAAATTAACGCTGAAGTAGCATTAAGACAAGACAGGCCTGTATTCAG 350
BSNT_02942 0 -------------------------------------------------- 0
BL00899 351 TCCTCATTTAAAAGTGATTGTCATCGCCGCTGACCTCCTCCGCACCTATT 400
BSNT_02942 0 -------------------------------------------------- 0
BL00899 401 CGCTGTCGGAACTGCTAGATCAGCCTCTCCGCGATAATGAAATCAGGCCG 450
BSNT_02942 0 -------------------------------------------------- 0
BL00899 451 AGCAGTATGGTGCTGGTCACAAGAGGGCGTGCGAGAGACACGCTTGAGCT 500
BSNT_02942 0 -------------------------------------------------- 0
BL00899 501 GAAGGAAACCGGCGAAATGCCGGCGTTTCGTCTGCTTAAAATCGTTGAAA 550
BSNT_02942 0 -------------------------------------------------- 0
BL00899 551 ATGAGTATAAAGCGAAAAAAATTCTCCCTCCTGTAACGCTTGCCAAATTG 600
BSNT_02942 1 ------------------------------------------GT----GG 4
|| ||
BL00899 601 ACAGGCAAAATGAGATCAGGAACAAGCTATCTGCTTCAAAATGTCATCGG 650
BSNT_02942 5 TTGCGGCGAATGGAGCGGTCAAGTATTCCGGAGCAGCTGTAATCAACGGA 54
|..|| ||||||...|.||.|||.|.||||||||.|.|||.|||||.
BL00899 651 TACCG----ATGGAGAAATAAAATATGCGGGAGCAGCCGCAATTAACGGG 696
BSNT_02942 55 AAATCGAAAAAAATGATAGGCACCTTAAATGAATATGAAACTGAGGGGAT 104
|||.|.||.||..||||.|||...||..|||||.|.||....||.||..|
BL00899 697 AAAACCAATAAGCTGATCGGCTATTTGGATGAACACGATTTAGAAGGCGT 746
BSNT_02942 105 TACATGGATTAGAGGAGAAGGGAAAGGCGGAGTTGTCAAAAGTCATGATA 154
.|..|||||.|..|||.|.||||..||.||..|.||.|||||..|||||
BL00899 747 GATGTGGATCATCGGAAAGGGGATTGGGGGCATGGTTAAAAGCTATGAT- 795
BSNT_02942 155 AAAAGAGCCAACAGA------------CG---TTAGCGT----ACGATAT 185
||.||||| || ||.|||| .||||
BL00899 796 -------CCGACAGAAAAGAAGGTGACCGCATTTGGCGTTGAATCGAT-- 836
BSNT_02942 186 CAATAAAATCAAAAGCAGAATTCAGCCAATCGTAAAAGGGAAAGATATTT 235
|||||.|||.|.|| |.||.|||||.|||||.||
BL00899 837 ---TAAAAGCAACATCA------AACCCATCGTCAAAGGAAA-------- 869
BSNT_02942 236 CATTC--CATGTCGATATTGAA------------TCAGAAGGCGATTTGG 271
| |.|||| |.||||| |||||.||..||.|.|
BL00899 870 ----CCGCCTGTC--TTTTGAAGTGAACGTAAAGTCAGAGGGGTATCTTG 913
BSNT_02942 272 TTGAAAACTGGAACACAAAAG---AGGCGTTGGACACCCAGTTTATAGAT 318
..||||||||||||||.|||| |.||.||.||...|.|.|||.||||.
BL00899 914 CGGAAAACTGGAACACGAAAGAAAAAGCTTTTGATGACAAATTTTTAGAA 963
BSNT_02942 319 CGTCTCGAAACGACTA--TTGAAAACGAGGTAAAGAAAATAGTTGGTCAG 366
....||||||..||.| ..|||||| |||.|| |||||.|.||| ||
BL00899 964 AAAGTCGAAAAAACAACCGCGAAAAC--GGTGAA-AAAATCGATGG--AG 1008
BSNT_02942 367 G-TATT--AAAAAAAATTCAGCATGATTATAAAGCAGATGTTGCGGGTTT 413
| .||| |||||||||..|....||.||.|||||||||.||||.||.||
BL00899 1009 GACATTACAAAAAAAATGAAAACCGAATACAAAGCAGATCTTGCCGGATT 1058
BSNT_02942 414 -----------TGATGA------ATCTTTTAGACTTACATATCCTCACTT 446
|||.|| ||| ..||.|||
BL00899 1059 CGGTAACGAGCTGAGGATCAAGCATC--CGAGGCTT-------------- 1092
BSNT_02942 447 ATGGAAAAGGGTGAAAAATAACTGGGATGACACCTTCAGTAAAGCCGACA 496
|||.|||...|.||.||.||.||||||||.|||||.| ||||.|
BL00899 1093 -TGGGAAAAACTAAAGAAAAATTGGGATGAGACCTTTA------CCGATA 1135
BSNT_02942 497 TCAC---ATACA----GTGTGAACGTCACAATTACTCATTTCGGCACGGT 539
| || .|||| .|||..|..||.|.||||...|.|.|||.||.||
BL00899 1136 T-ACCGATTACATTTCATGTTCAAATCGCGATTAAAGAATACGGAACTGT 1184
BSNT_02942 540 T----AAAACTCAGTAA 552
| | |||||||
BL00899 1185 TGGGGA----TCAGTAA 1197
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