Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00134 and BL00861

See Amino acid alignment / Visit BSNT_00134 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00134___sul.1.5803.seq
#    -bsequence dna-align/BL00861___sul.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00134___sul-BL00861___sul.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00134___sul-BL00861___sul.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00134___sul
# 2: BL00861___sul
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity:     625/886 (70.5%)
# Similarity:   625/886 (70.5%)
# Gaps:          56/886 ( 6.3%)
# Score: 2134.5
# 
#
#=======================================

BSNT_00134___      1 ATGGCGCAGCACACA----ATAGATCAAACACAAGTCATC-CACACTAAG     45
                     |||||||..||.|||    ...|.||||| .|||.|.||| ||    |||
BL00861___sul      1 ATGGCGCTTCAAACAGCGGTGCGTTCAAA-GCAACTGATCGCA----AAG     45

BSNT_00134___     46 CCCAGCGCTTTATCATATAAAGAGAAGACGCTGGTGATGGGAATTTTAAA     95
                     |....|.|.||.||.|||.||||.||.||..||.|.||||||||||||||
BL00861___sul     46 CAATACACGTTGTCTTATGAAGATAAAACATTGATCATGGGAATTTTAAA     95

BSNT_00134___     96 CGTAACGCCTGACTCTTTCTCGGACGGCGGAAAATATGACAGCTTGGA-C    144
                     .||.|||||.||.|||||.||.|||||||||||||||.|||||.|.|| |
BL00861___sul     96 TGTGACGCCCGATTCTTTTTCAGACGGCGGAAAATATAACAGCATCGATC    145

BSNT_00134___    145 AAGGCGC--TGCTGCACGCGAAAGAGATGATCGATGATGGTGCCCATATC    192
                        ||||  |..|.||.||.|||.|.||||||||.||.||.|||||||||
BL00861___sul    146 ---GCGCCGTCATTCATGCAAAACAAATGATCGAAGACGGCGCCCATATC    192

BSNT_00134___    193 ATTGATATCGGAGGGGAATCGACAAGGCCTGGCGCTGAGTGGGTATCTGA    242
                     .|||||||||||||.||||||||.|||||.||.||.||...|||.|||..
BL00861___sul    193 CTTGATATCGGAGGAGAATCGACGAGGCCGGGGGCGGAAAAGGTTTCTCT    242

BSNT_00134___    243 GGATGAGGAGATGTCCAGAGTCATTCCGGTGATTGAGCGGATTACGAAAG    292
                     .|||||.|||.||||.||||||||.||.||.||||            ||.
BL00861___sul    243 TGATGAAGAGCTGTCAAGAGTCATACCTGTAATTG------------AAA    280

BSNT_00134___    293 AGCTTGGT------------GTTCCTATTTCTGTAGATACGTACAAGGCT    330
                     |.||||.|            ||.||.|||||.||.||.||.||.||.||.
BL00861___sul    281 AACTTGTTCAGGAAATCGACGTCCCGATTTCCGTTGACACTTATAAAGCG    330

BSNT_00134___    331 TCTGTCGCAGATGAAGCAGTGAAAGCCGGCGCATCCATTATCAATGATAT    380
                     ...||.|||||||||||..|.||.|||||.|||.||||.|||||||||.|
BL00861___sul    331 CAAGTGGCAGATGAAGCCATTAAGGCCGGTGCAGCCATCATCAATGATGT    380

BSNT_00134___    381 TTGGGGTGCCAAA-CATGATCCGAAGATGGCTTCC--GTTGCAGCTGAAC    427
                     .|||||.||.||| || |||||..|.|||||  ||  |||||.||.|..|
BL00861___sul    381 CTGGGGAGCAAAAGCA-GATCCTGACATGGC--CCGAGTTGCGGCCGCTC    427

BSNT_00134___    428 ATAATGTTCCAATTGTTCTCATGCATAACCGCCCTGAAAGAAACTACAAT    477
                     |||||||.||.|||.|..|.||||||||||||...|||.|.||.||.||.
BL00861___sul    428 ATAATGTGCCGATTATCTTGATGCATAACCGCGAGGAACGGAATTATAAG    477

BSNT_00134___    478 GACTTATTGCCGGATATGCTGTCGGACTTAATGGAGAGTGTAAAAATTGC    527
                     ||.||..|.|||||.||||||||.||.||.|||||..||||.|..|||||
BL00861___sul    478 GATTTGATCCCGGACATGCTGTCTGATTTGATGGAATGTGTGAGCATTGC    527

BSNT_00134___    528 TGTTGA-----GGCCGGAGTAGACGAGAAGAACATTATTCTTGATCCCGG    572
                          |     .||.||.||..|.||..|..||||..|.|||||||||||
BL00861___sul    528 -----AAAATCAGCAGGCGTTCAGGATCATCACATCGTACTTGATCCCGG    572

BSNT_00134___    573 TATCGGTTTCGCGAAAACCTATCACGATAACTTGGCAGTGATGAACAAAC    622
                     .|||||.||.||.|||||.|||||.||.||.|||||.||.|||||..|.|
BL00861___sul    573 CATCGGCTTTGCCAAAACGTATCATGACAATTTGGCGGTCATGAATCAGC    622

BSNT_00134___    623 TAGAGATTTTCAGCGGAGTGGGATATCCGGTTCTTCTGGCAACCTCCCGA    672
                     |.||||..|||||||.|..||||||.||||||.|..|||..||.||.|||
BL00861___sul    623 TCGAGAAGTTCAGCGAACCGGGATACCCGGTTTTATTGGGGACGTCACGA    672

BSNT_00134___    673 AAAAGATTCATCGGGCGTGTTCTGGATCTTCCGCCTGAGGAGCGGGCTGA    722
                     ||||.|||.|||||.||.||.||||||||.||||||||.||..|.||.||
BL00861___sul    673 AAAAAATTTATCGGCCGAGTCCTGGATCTGCCGCCTGAAGAAAGAGCGGA    722

BSNT_00134___    723 GGGCACAGGCGCGACTGTGTGTCTCGGCATTCAAAAAGGCTGTGACATTG    772
                     .|||||.||.|||||.||.||.|||||.||||||||.||.||.||.||.|
BL00861___sul    723 AGGCACGGGGGCGACAGTATGCCTCGGTATTCAAAAGGGGTGCGATATCG    772

BSNT_00134___    773 TCAGGGTCCATGATGTAAAGCAAATTGCCAGAATGGCGAAAATGATGGAC    822
                     |||||||.|||||.||.||||||||..||||.|||||.|||||||||||.
BL00861___sul    773 TCAGGGTGCATGACGTCAAGCAAATCTCCAGGATGGCAAAAATGATGGAT    822

BSNT_00134___    823 GCGATGCTGAATAAGGGAGGGGTGCACCATGGATAA    858
                     ||.|||.|..||||.|||||.||..|.|||.|||||
BL00861___sul    823 GCCATGATTGATAAAGGAGGCGTTTATCATCGATAA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00134 and BL00861

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
