Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00132 and BL00860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00132___pabC.1.5803.seq
# -bsequence dna-align/BL00860___pabC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00132___pabC-BL00860___pabC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00132___pabC-BL00860___pabC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00132___pabC
# 2: BL00860___pabC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 973
# Identity: 567/973 (58.3%)
# Similarity: 567/973 (58.3%)
# Gaps: 203/973 (20.9%)
# Score: 1500.0
#
#
#=======================================
BSNT_00132___ 1 ---ATGATATATGTGAACGGCCGGTATATGGAGGAGAAAGATGCAGTTCT 47
||.||.||..|||||||.|..|||.|..|||||.|.||.|||...||
BL00860___pab 1 ATGATCATTTACCTGAACGGTCAATATGTAAAGGAGGAGGAAGCAAGACT 50
BSNT_00132___ 48 TTCTCCTTTTGACCATGGGTTTTTATATGGGATCGGTGTTTTCGAAACCT 97
||||||||||||||||||.||||||||.||..||||.||.||||||||.|
BL00860___pab 51 TTCTCCTTTTGACCATGGTTTTTTATACGGAGTCGGGGTATTCGAAACGT 100
BSNT_00132___ 98 TCAGGCTCTACGAA-GGCTGCCCGTTTTTGCTT---GATTGGCATATAGA 143
||.||||.||.||| ||..|||| ||.||| ||.||||||||.||
BL00860___pab 101 TCCGGCTTTATGAAGGGAAGCCC----TTCCTTTTAGACTGGCATATGGA 146
BSNT_00132___ 144 AAGGCTTGAACGCGCGCTT---AAGGATCTGCAAATCGAATATACTGTTT 190
.| |.|||||| ..||||| || .|.|||.||||.|| |.||
BL00860___pab 147 CA-GATTGAAC-AACGCTTTGGAA-CAGCTGAAAATTGA-------GCTT 186
BSNT_00132___ 191 ---------CAAAGCATGAGATCCTTGAGATGCTGGACAAGCTGCTTAAG 231
.||||| ||..|.||||..||.||.||||.|||||||.||
BL00860___pab 187 GAGCTGACAAAAAGC--GAAGTGCTTGTCATTCTTGACAGGCTGCTTCAG 234
BSNT_00132___ 232 CTAAAT--------GATATCAAGGATGGTAATGCCCGCGTCAGACTGAAC 273
.|.||| || ||| ||| ||||..|.|||.|.||.||.
BL00860___pab 235 TTGAATCAGCCGCAGA-ATC-----TGG--ATGCGAGGGTCCGGCTAAAT 276
BSNT_00132___ 274 ATATCAGCGGGAATCAGCGATAAAGG-CTTTGTCGCCCAGA--CGTACGA 320
|||||.||.||...|.|||.....|| ||||.| ||.|| |.|||.|
BL00860___pab 277 ATATCCGCCGGTCCCGGCGGCCCCGGCCTTTTT---CCTGATTCATACAA 323
BSNT_00132___ 321 TAAGCCGACCGTTTTATGCTTTGTGAATCAGCTGAAACCAGAA-----AG 365
.||.||...||| |.|.|||| .|.||||.|| ||
BL00860___pab 324 AAATCCCGGCGT------CATGGTGA---TGATGAATCC----TTTTCAG 360
BSNT_00132___ 366 CCT---TCCTTTGC-----AAAAAGAAGGGAAGGTTTTATC-----GATA 402
||| |||.||.| |||| |||.||..|.||| |.|.
BL00860___pab 361 CCTGCATCCGTTCCGGCTGAAAA-----GGAGGGCGTCATCTTGCAGGTC 405
BSNT_00132___ 403 CGGAGAAACACTCCTGAGGGATCGTTCCGGTTAAAATCTCATCATTATCT 452
||..|.||.||.||.|||||..|||||||.||.|||||.|||||.|.|.|
BL00860___pab 406 CGCCGCAATACGCCAGAGGGTCCGTTCCGCTTGAAATCGCATCACTTTTT 455
BSNT_00132___ 453 AAATAATATGTATGCGAAACGGGAAATTGGAAATGATCCGCGTGTC---- 498
|||||||.||||.|..|||.||||..|.|||.|||| |||| |.|
BL00860___pab 456 AAATAATTTGTACGGAAAAAGGGAGCTCGGACATGA--CGCG-GCCAAAG 502
BSNT_00132___ 499 GAGGGAATTTTCCTAACGGAGGATGGAGCTGTTGCAGAGGGTATCATATC 548
.|||||.|||||.||.||.||| .||||||||.||.||.||.||.||.||
BL00860___pab 503 AAGGGATTTTTCTTACCGAAGG-CGGAGCTGTAGCTGAAGGAATTATTTC 551
BSNT_00132___ 549 TAATGTCTTTTGGAGAAAAGGTCGTTGTATCTATACGCCATCGCTTGATA 598
.||.||.||||||.|.|||||..|.|||.|.|||||.||.||.|||||||
BL00860___pab 552 CAACGTTTTTTGGCGGAAAGGCAGCTGTGTGTATACACCTTCTCTTGATA 601
BSNT_00132___ 599 CTGGTATTCTGGACGGCGTCACGAGACGTTTTATCATAGA---AAATGCA 645
|.||.||..|.|.|||.|||||..|.||.|...||||.|| ...||||
BL00860___pab 602 CCGGCATATTAGGCGGTGTCACACGCCGCTACGTCATCGAGCGCCTTGCA 651
BSNT_00132___ 646 AAGAATATCGGCCTGGAGCTCAAAACGGGCCGATAT-----------GAG 684
.||||.||..|.||..|||.|..||| |.||| |||
BL00860___pab 652 ---GATATGGGAATCGAAGTCATAGAGGG--GGTATACCCCTTGGAAGAG 696
BSNT_00132___ 685 CTAGAAGCTCTCTTGACAGCTGACGAAGCGTGGATGACGAACTCGGTTCT 734
|| |||||| .||.||||||||.||||||||.||.||.||||.
BL00860___pab 697 CT------TCTCTT---TGCGGACGAAGCATGGATGACCAATTCCGTTCA 737
BSNT_00132___ 735 TGAAATCATCCCGTTTACTAAAAT----AGAA--GAA------GTAAACT 772
.||||||.|.||.||....|.||| ||.| ||| |.|||..
BL00860___pab 738 GGAAATCGTTCCATTCCGGAGAATCGGCAGCACTGAATTTCCGGGAAAGG 787
BSNT_00132___ 773 ATGGAA----GCCAAAGCGGAGAAGCAACCTCCGCTCTTCAATTGTTATA 818
|||||| |.|.||.|| |||.|||..|..|||
BL00860___pab 788 ATGGAAATTTGTCGAAACG----------------TCTGCAAGAGGCATA 821
BSNT_00132___ 819 CAAAAAAGAAATAAAGAACATGATTCATGAAAAGGGAGGAAGAGCATGGC 868
||..| ||||| ||||| ||||
BL00860___pab 822 CACTA--------------ATGAT------------AGGAA-AGCA---- 840
BSNT_00132___ 869 GCAGCACACAATAG--------- 882
||| |.|.||||.
BL00860___pab 841 GCA--AAAGAATATTTGAGTTAA 861
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