Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00129 and BL00858
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00129___pabB.1.5803.seq
# -bsequence dna-align/BL00858___pabB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00129___pabB-BL00858___pabB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00129___pabB-BL00858___pabB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00129___pabB
# 2: BL00858___pabB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1575
# Identity: 1035/1575 (65.7%)
# Similarity: 1035/1575 (65.7%)
# Gaps: 222/1575 (14.1%)
# Score: 3432.5
#
#
#=======================================
BSNT_00129___ 1 TTGGAAGAGAAATTCACTTTTTTCACTCACAACATTGCTTTACAATTAAA 50
BL00858___pab 0 -------------------------------------------------- 0
BSNT_00129___ 51 AACAAGTAAAAAAGAAAATAGAGGAATGATACAAATGGCACAACGCAGAC 100
|||..||||||.||.|
BL00858___pab 1 ----------------------------------ATGAGACAACGAAGGC 16
BSNT_00129___ 101 CGGCAGGCAAAAAAGTACC--TTTTCAAAAAGACTCA----TTCTTACAA 144
|.|.| ||.|.|..||.|| |||||.|| ||| ||.||.||.
BL00858___pab 17 CTGTA-GCCAGAGCGTTCCCATTTTCCAA-----TCAACAGTTTTTGCAG 60
BSNT_00129___ 145 CAATTTGAGAAACTTGCGCAATCCCGAA---AACACCATGTACTTCTCGA 191
||||.|||.|..||..||.|| .||| ||.||||.||.||.||.||
BL00858___pab 61 CAATATGAAAGCCTATCGAAA---GGAAAAGAATACCACGTTCTGCTGGA 107
BSNT_00129___ 192 AAGTGCAAGAGGCGGCAG-ATACAGTATAGCCGGTCTTGATCCAATTGCG 240
|||.||.|||||||| || ||||||.||||||||.||.||.||..|.||.
BL00858___pab 108 AAGCGCGAGAGGCGG-AGAATACAGCATAGCCGGACTCGACCCTGTCGCA 156
BSNT_00129___ 241 ACTGTGAAAGGAAAAGACGGAATAACTACAATTAAGCAT---GGTGATGA 287
|..|.||||||.||||||||.||.||.||.|||.|..|| ||.||.|
BL00858___pab 157 ATAGCGAAAGGGAAAGACGGTATCACGACGATTCAATATAAAGGGGACG- 205
BSNT_00129___ 288 GATGCTGTTTAAAGAAGGTGATCCATTACGGGCC---TTCCACAGCTGGT 334
|..|.||.|||||.||.|||||.||.|.| | ||.|.|| .||||
BL00858___pab 206 --TCATATTCAAAGAGGGGGATCCGTTTCTG--CAGTTTTCTCA-ATGGT 250
BSNT_00129___ 335 TTAAAACGCTGGAAACAGAAACGAAT--CATGAGTTCCCTGACTTTCAAG 382
||.||||||||.||||.||.|| |.| || ||.||.||.||||||||.|
BL00858___pab 251 TTGAAACGCTGAAAACGGAGAC-AGTTGCA-GATTTTCCCGACTTTCAGG 298
BSNT_00129___ 383 GCGGGGCAATCGGGTTTCTCAGCTATGATTACGCACGGTACATTGAAAAT 432
|||||||..||||.|||||.||||||||.||.||.|||||.|||||.||.
BL00858___pab 299 GCGGGGCTGTCGGTTTTCTTAGCTATGACTATGCCCGGTATATTGAGAAA 348
BSNT_00129___ 433 TTTAAAATGCTCTC-ATTAGATGATCTAGAAACACCAGATATTTAT--TT 479
||.|||||.||.|| ||| ||||||||..||||.||.| |||||| ||
BL00858___pab 349 TTCAAAATCCTGTCTATT-GATGATCTGCAAACGCCGG--ATTTATTCTT 395
BSNT_00129___ 480 TCTTGTTTTTGATGATATAGCAGTTTATGACCATCA--AGAAG-AGTCTC 526
|||.||.||||||||||||||.||.|||||||||.| ||.|| || |
BL00858___pab 396 TCTCGTATTTGATGATATAGCCGTCTATGACCATGAGCAGCAGCAG---C 442
BSNT_00129___ 527 TATGGCTGATTACTCATGTTAATGGTTCTGATCAGGAAA---------CA 567
|.|||.|||||||.|| ..|||||.|.|||| |.
BL00858___pab 443 TTTGGGTGATTACCCA---------CACTGATGAAGAAACGCCGGCCGCT 483
BSNT_00129___ 568 GCGGATGTGAAGCTATCTGA---GTTAGAGCAGATGTGGCTGACTGAGCT 614
|||||.|.||| ||..|| |.|.|||||.||||||..|||.||.|.
BL00858___pab 484 GCGGAAGAGAA---ATTGGACAGGCTTGAGCAAATGTGGAAGACGGAACA 530
BSNT_00129___ 615 TC------CCGCTGTCTCTTTGCGAG------AGATGAACCCTGA-AACA 651
|| |||||| ||| ||..||| ||| ||||
BL00858___pab 531 TCCGAAGGCCGCTG---------GAGGTCATCAGCCGAA---TGATAACA 568
BSNT_00129___ 652 GATGGTTCC-----TTCGCGGCGCCATTTACCGAGGATGGGTTCTCACAA 696
.|.| || ||||||||..|||||||.||.|..||.||.||.||.
BL00858___pab 569 AAGG---CCCGGCATTCGCGGCCTCATTTACAGAAGCCGGCTTTTCTCAG 615
BSNT_00129___ 697 GCTGTAGAGAAAATCAAACAATACATTGCCAGCGGAGATGTGTTTCAAGT 746
|||||.||||||.|.||.||||||||.||.|||||.||.||.|||||.||
BL00858___pab 616 GCTGTTGAGAAAGTGAAGCAATACATCGCAAGCGGTGACGTATTTCAGGT 665
BSNT_00129___ 747 CAATCTATCAATAAGGCAGTCACAGTCACTGTCTGCCCACCCATATCAAA 796
.|||||.||..|..|.|||||..||...||.|||||.|..||.|||.|..
BL00858___pab 666 GAATCTTTCTGTTCGCCAGTCGGAGCGCCTTTCTGCGCCTCCTTATGAGG 715
BSNT_00129___ 797 TTTACAAAACCTTGAGAGAAGTAAATCCTTCTCCTTATATGGCGTATTTA 846
|.||.||.|..||.||||||.|.||.|||||.||.||.|||||.||.||.
BL00858___pab 716 TGTATAAGATGTTAAGAGAAATCAACCCTTCGCCGTACATGGCCTACTTG 765
BSNT_00129___ 847 GAAACACCTGATTTCCAAATCATTTGCGGCTCGCCTGAACTGCTTGTCAG 896
|||||.||.|||||.||||||||.|||||.||||||||||||||..|.|.
BL00858___pab 766 GAAACCCCGGATTTTCAAATCATCTGCGGGTCGCCTGAACTGCTCATTAA 815
BSNT_00129___ 897 CAAAAAGGG---CAAGCTATTAGAGACGAGACCGATTGCGGGCACCCGTT 943
.|||||||| ||.|| |.||.||.||.||||||||.||.||.||.|
BL00858___pab 816 GAAAAAGGGCACCAGGC---TTGAAACAAGGCCGATTGCCGGAACGCGAT 862
BSNT_00129___ 944 CCAGAGGGAAAACAAATGAA---GAAGACGAGGTGCTTGCAAACGAATTG 990
||.|.||| .|..||||| ||.||.||.|.|||.||.|||||||||
BL00858___pab 863 CCCGCGGG---GCGGATGAAGCGGAGGATGAAGCGCTCGCGAACGAATTG 909
BSNT_00129___ 991 ATACA-CAATGAAAAAGAACGCGCGGAACATGTCATGCTGGTTGATCTTG 1039
|| || .|||||||||||.|||||.||||||||.|||||.||||||.|.|
BL00858___pab 910 AT-CATGAATGAAAAAGAGCGCGCCGAACATGTGATGCTCGTTGATTTAG 958
BSNT_00129___ 1040 AGCGAAATGATCTGGGAAGAGTATCGCGTTACGGGTCTGTGCGCGTAAAT 1089
||||.|||||.||.||.||.||.||....|||||.||.||.||.||..||
BL00858___pab 959 AGCGTAATGACCTCGGCAGGGTCTCCAAGTACGGTTCGGTCCGGGTCGAT 1008
BSNT_00129___ 1090 GAATTCATGGCAATTGAAAAATACTCGCATGTAATGCACATTGTGTCTAA 1139
||||||||||..|||||.||.||.||.||.||.|||||.|||||.||.||
BL00858___pab 1009 GAATTCATGGTGATTGAGAAGTATTCCCACGTCATGCATATTGTCTCAAA 1058
BSNT_00129___ 1140 TGTCCAAGGTGAACTGCAGGATGGGTATGATGCTGTTGATATTATTCATG 1189
|||....||||||||...|||||..|..|||||.||||||.|.||.||||
BL00858___pab 1059 TGTGTGCGGTGAACTAAGGGATGAATGCGATGCCGTTGATGTCATCCATG 1108
BSNT_00129___ 1190 CTGTGTTTCCCGGAGGAACCATTACTGGTGCACCGAAAGTAAGAACGATG 1239
|.||||||||||||||.||.||.||.||.||.||||||||.|||||||||
BL00858___pab 1109 CCGTGTTTCCCGGAGGTACGATCACCGGAGCGCCGAAAGTCAGAACGATG 1158
BSNT_00129___ 1240 GAAATAATAGAAGAACTTGAGCCGACACGCCGGGGGCTTTATACTGGATC 1289
|||||.||.||.||.||||||||.||..|.|||||||||||||||||.||
BL00858___pab 1159 GAAATTATTGAGGAGCTTGAGCCAACGAGACGGGGGCTTTATACTGGTTC 1208
BSNT_00129___ 1290 TATAGGATGGTTTGGATATAATCACGATCTGCAGTTTAATATCGTCATTC 1339
||||||.|||||.|||||||||||.|||.||||.||||||||||||||.|
BL00858___pab 1209 TATAGGGTGGTTCGGATATAATCAGGATATGCACTTTAATATCGTCATCC 1258
BSNT_00129___ 1340 GAACCATTTA--TGCAACCGGAGGGCAGGCATTTATGCAGTCCGGCGCAG 1387
||||.||||| ||.||.|| ||.|||||.||.||||||||.||.||.|
BL00858___pab 1259 GAACGATTTATGTGAAAGCG--GGCCAGGCGTTCATGCAGTCGGGAGCGG 1306
BSNT_00129___ 1388 GAGTTGTGATTGATTCTGTTCCGAAGCACGAATACAAGGAATCATTCAAA 1437
||.|.||.||.|||||...|||.|.|||.|||||.||.||.|||.|.|||
BL00858___pab 1307 GAATCGTCATCGATTCAAATCCTAGGCATGAATATAAAGAGTCAATTAAA 1356
BSNT_00129___ 1438 AAAGCTTTTGCGATGCAAAGAGCATTAGAGCTGAGCAAAGAAGAGACAAA 1487
||.||..|.||||||.|||..||..|..||.||||..|||||||||.|||
BL00858___pab 1357 AAGGCCCTGGCGATGAAAAAGGCGCTGCAGTTGAGTGAAGAAGAGAAAAA 1406
BSNT_00129___ 1488 A-ATTAGATGA-------------- 1497
| |..|||.||
BL00858___pab 1407 AGAGCAGAGGAGAGCTGAGATATGA 1431
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