Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00129 and BL00858

See Amino acid alignment / Visit BSNT_00129 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:48
# Commandline: needle
#    -asequence dna-align/BSNT_00129___pabB.1.5803.seq
#    -bsequence dna-align/BL00858___pabB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00129___pabB-BL00858___pabB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00129___pabB-BL00858___pabB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00129___pabB
# 2: BL00858___pabB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1575
# Identity:    1035/1575 (65.7%)
# Similarity:  1035/1575 (65.7%)
# Gaps:         222/1575 (14.1%)
# Score: 3432.5
# 
#
#=======================================

BSNT_00129___      1 TTGGAAGAGAAATTCACTTTTTTCACTCACAACATTGCTTTACAATTAAA     50
                                                                       
BL00858___pab      0 --------------------------------------------------      0

BSNT_00129___     51 AACAAGTAAAAAAGAAAATAGAGGAATGATACAAATGGCACAACGCAGAC    100
                                                       |||..||||||.||.|
BL00858___pab      1 ----------------------------------ATGAGACAACGAAGGC     16

BSNT_00129___    101 CGGCAGGCAAAAAAGTACC--TTTTCAAAAAGACTCA----TTCTTACAA    144
                     |.|.| ||.|.|..||.||  |||||.||     |||    ||.||.||.
BL00858___pab     17 CTGTA-GCCAGAGCGTTCCCATTTTCCAA-----TCAACAGTTTTTGCAG     60

BSNT_00129___    145 CAATTTGAGAAACTTGCGCAATCCCGAA---AACACCATGTACTTCTCGA    191
                     ||||.|||.|..||..||.||   .|||   ||.||||.||.||.||.||
BL00858___pab     61 CAATATGAAAGCCTATCGAAA---GGAAAAGAATACCACGTTCTGCTGGA    107

BSNT_00129___    192 AAGTGCAAGAGGCGGCAG-ATACAGTATAGCCGGTCTTGATCCAATTGCG    240
                     |||.||.|||||||| || ||||||.||||||||.||.||.||..|.||.
BL00858___pab    108 AAGCGCGAGAGGCGG-AGAATACAGCATAGCCGGACTCGACCCTGTCGCA    156

BSNT_00129___    241 ACTGTGAAAGGAAAAGACGGAATAACTACAATTAAGCAT---GGTGATGA    287
                     |..|.||||||.||||||||.||.||.||.|||.|..||   ||.||.| 
BL00858___pab    157 ATAGCGAAAGGGAAAGACGGTATCACGACGATTCAATATAAAGGGGACG-    205

BSNT_00129___    288 GATGCTGTTTAAAGAAGGTGATCCATTACGGGCC---TTCCACAGCTGGT    334
                       |..|.||.|||||.||.|||||.||.|.|  |   ||.|.|| .||||
BL00858___pab    206 --TCATATTCAAAGAGGGGGATCCGTTTCTG--CAGTTTTCTCA-ATGGT    250

BSNT_00129___    335 TTAAAACGCTGGAAACAGAAACGAAT--CATGAGTTCCCTGACTTTCAAG    382
                     ||.||||||||.||||.||.|| |.|  || ||.||.||.||||||||.|
BL00858___pab    251 TTGAAACGCTGAAAACGGAGAC-AGTTGCA-GATTTTCCCGACTTTCAGG    298

BSNT_00129___    383 GCGGGGCAATCGGGTTTCTCAGCTATGATTACGCACGGTACATTGAAAAT    432
                     |||||||..||||.|||||.||||||||.||.||.|||||.|||||.||.
BL00858___pab    299 GCGGGGCTGTCGGTTTTCTTAGCTATGACTATGCCCGGTATATTGAGAAA    348

BSNT_00129___    433 TTTAAAATGCTCTC-ATTAGATGATCTAGAAACACCAGATATTTAT--TT    479
                     ||.|||||.||.|| ||| ||||||||..||||.||.|  ||||||  ||
BL00858___pab    349 TTCAAAATCCTGTCTATT-GATGATCTGCAAACGCCGG--ATTTATTCTT    395

BSNT_00129___    480 TCTTGTTTTTGATGATATAGCAGTTTATGACCATCA--AGAAG-AGTCTC    526
                     |||.||.||||||||||||||.||.|||||||||.|  ||.|| ||   |
BL00858___pab    396 TCTCGTATTTGATGATATAGCCGTCTATGACCATGAGCAGCAGCAG---C    442

BSNT_00129___    527 TATGGCTGATTACTCATGTTAATGGTTCTGATCAGGAAA---------CA    567
                     |.|||.|||||||.||         ..|||||.|.||||         |.
BL00858___pab    443 TTTGGGTGATTACCCA---------CACTGATGAAGAAACGCCGGCCGCT    483

BSNT_00129___    568 GCGGATGTGAAGCTATCTGA---GTTAGAGCAGATGTGGCTGACTGAGCT    614
                     |||||.|.|||   ||..||   |.|.|||||.||||||..|||.||.|.
BL00858___pab    484 GCGGAAGAGAA---ATTGGACAGGCTTGAGCAAATGTGGAAGACGGAACA    530

BSNT_00129___    615 TC------CCGCTGTCTCTTTGCGAG------AGATGAACCCTGA-AACA    651
                     ||      ||||||         |||      ||..|||   ||| ||||
BL00858___pab    531 TCCGAAGGCCGCTG---------GAGGTCATCAGCCGAA---TGATAACA    568

BSNT_00129___    652 GATGGTTCC-----TTCGCGGCGCCATTTACCGAGGATGGGTTCTCACAA    696
                     .|.|   ||     ||||||||..|||||||.||.|..||.||.||.||.
BL00858___pab    569 AAGG---CCCGGCATTCGCGGCCTCATTTACAGAAGCCGGCTTTTCTCAG    615

BSNT_00129___    697 GCTGTAGAGAAAATCAAACAATACATTGCCAGCGGAGATGTGTTTCAAGT    746
                     |||||.||||||.|.||.||||||||.||.|||||.||.||.|||||.||
BL00858___pab    616 GCTGTTGAGAAAGTGAAGCAATACATCGCAAGCGGTGACGTATTTCAGGT    665

BSNT_00129___    747 CAATCTATCAATAAGGCAGTCACAGTCACTGTCTGCCCACCCATATCAAA    796
                     .|||||.||..|..|.|||||..||...||.|||||.|..||.|||.|..
BL00858___pab    666 GAATCTTTCTGTTCGCCAGTCGGAGCGCCTTTCTGCGCCTCCTTATGAGG    715

BSNT_00129___    797 TTTACAAAACCTTGAGAGAAGTAAATCCTTCTCCTTATATGGCGTATTTA    846
                     |.||.||.|..||.||||||.|.||.|||||.||.||.|||||.||.||.
BL00858___pab    716 TGTATAAGATGTTAAGAGAAATCAACCCTTCGCCGTACATGGCCTACTTG    765

BSNT_00129___    847 GAAACACCTGATTTCCAAATCATTTGCGGCTCGCCTGAACTGCTTGTCAG    896
                     |||||.||.|||||.||||||||.|||||.||||||||||||||..|.|.
BL00858___pab    766 GAAACCCCGGATTTTCAAATCATCTGCGGGTCGCCTGAACTGCTCATTAA    815

BSNT_00129___    897 CAAAAAGGG---CAAGCTATTAGAGACGAGACCGATTGCGGGCACCCGTT    943
                     .||||||||   ||.||   |.||.||.||.||||||||.||.||.||.|
BL00858___pab    816 GAAAAAGGGCACCAGGC---TTGAAACAAGGCCGATTGCCGGAACGCGAT    862

BSNT_00129___    944 CCAGAGGGAAAACAAATGAA---GAAGACGAGGTGCTTGCAAACGAATTG    990
                     ||.|.|||   .|..|||||   ||.||.||.|.|||.||.|||||||||
BL00858___pab    863 CCCGCGGG---GCGGATGAAGCGGAGGATGAAGCGCTCGCGAACGAATTG    909

BSNT_00129___    991 ATACA-CAATGAAAAAGAACGCGCGGAACATGTCATGCTGGTTGATCTTG   1039
                     || || .|||||||||||.|||||.||||||||.|||||.||||||.|.|
BL00858___pab    910 AT-CATGAATGAAAAAGAGCGCGCCGAACATGTGATGCTCGTTGATTTAG    958

BSNT_00129___   1040 AGCGAAATGATCTGGGAAGAGTATCGCGTTACGGGTCTGTGCGCGTAAAT   1089
                     ||||.|||||.||.||.||.||.||....|||||.||.||.||.||..||
BL00858___pab    959 AGCGTAATGACCTCGGCAGGGTCTCCAAGTACGGTTCGGTCCGGGTCGAT   1008

BSNT_00129___   1090 GAATTCATGGCAATTGAAAAATACTCGCATGTAATGCACATTGTGTCTAA   1139
                     ||||||||||..|||||.||.||.||.||.||.|||||.|||||.||.||
BL00858___pab   1009 GAATTCATGGTGATTGAGAAGTATTCCCACGTCATGCATATTGTCTCAAA   1058

BSNT_00129___   1140 TGTCCAAGGTGAACTGCAGGATGGGTATGATGCTGTTGATATTATTCATG   1189
                     |||....||||||||...|||||..|..|||||.||||||.|.||.||||
BL00858___pab   1059 TGTGTGCGGTGAACTAAGGGATGAATGCGATGCCGTTGATGTCATCCATG   1108

BSNT_00129___   1190 CTGTGTTTCCCGGAGGAACCATTACTGGTGCACCGAAAGTAAGAACGATG   1239
                     |.||||||||||||||.||.||.||.||.||.||||||||.|||||||||
BL00858___pab   1109 CCGTGTTTCCCGGAGGTACGATCACCGGAGCGCCGAAAGTCAGAACGATG   1158

BSNT_00129___   1240 GAAATAATAGAAGAACTTGAGCCGACACGCCGGGGGCTTTATACTGGATC   1289
                     |||||.||.||.||.||||||||.||..|.|||||||||||||||||.||
BL00858___pab   1159 GAAATTATTGAGGAGCTTGAGCCAACGAGACGGGGGCTTTATACTGGTTC   1208

BSNT_00129___   1290 TATAGGATGGTTTGGATATAATCACGATCTGCAGTTTAATATCGTCATTC   1339
                     ||||||.|||||.|||||||||||.|||.||||.||||||||||||||.|
BL00858___pab   1209 TATAGGGTGGTTCGGATATAATCAGGATATGCACTTTAATATCGTCATCC   1258

BSNT_00129___   1340 GAACCATTTA--TGCAACCGGAGGGCAGGCATTTATGCAGTCCGGCGCAG   1387
                     ||||.|||||  ||.||.||  ||.|||||.||.||||||||.||.||.|
BL00858___pab   1259 GAACGATTTATGTGAAAGCG--GGCCAGGCGTTCATGCAGTCGGGAGCGG   1306

BSNT_00129___   1388 GAGTTGTGATTGATTCTGTTCCGAAGCACGAATACAAGGAATCATTCAAA   1437
                     ||.|.||.||.|||||...|||.|.|||.|||||.||.||.|||.|.|||
BL00858___pab   1307 GAATCGTCATCGATTCAAATCCTAGGCATGAATATAAAGAGTCAATTAAA   1356

BSNT_00129___   1438 AAAGCTTTTGCGATGCAAAGAGCATTAGAGCTGAGCAAAGAAGAGACAAA   1487
                     ||.||..|.||||||.|||..||..|..||.||||..|||||||||.|||
BL00858___pab   1357 AAGGCCCTGGCGATGAAAAAGGCGCTGCAGTTGAGTGAAGAAGAGAAAAA   1406

BSNT_00129___   1488 A-ATTAGATGA--------------   1497
                     | |..|||.||              
BL00858___pab   1407 AGAGCAGAGGAGAGCTGAGATATGA   1431


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