Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00126 and BL00855
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00126___yacD.1.5803.seq
# -bsequence dna-align/BL00855___yacD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00126___yacD-BL00855___yacD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00126___yacD-BL00855___yacD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00126___yacD
# 2: BL00855___yacD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity: 644/929 (69.3%)
# Similarity: 644/929 (69.3%)
# Gaps: 73/929 ( 7.9%)
# Score: 2090.5
#
#
#=======================================
BSNT_00126___ 1 TTGAAATCAAGAACAATCTGGACCATTATTTTAGGGGCGCTGTTGGT--- 47
||||||||.||||||.|.|||.|.|||||||||||.|||.|.||.||
BL00855___yac 1 TTGAAATCGAGAACACTTTGGCCGATTATTTTAGGTGCGATCTTCGTCAA 50
BSNT_00126___ 48 TTGCTGTATTGCTG-TTGCATATACGCTGACGAAATCCCAAACCGGCGCA 96
|||| |||| || |.||.|||...|||||||||.|.||.|| |||.
BL00855___yac 51 TTGC---ATTG-TGATCGCGTATGTTCTGACGAAAGCGCAGAC---CGCT 93
BSNT_00126___ 97 TCGTCATCCGGTGAGTCT---------ATTGCGACTATCGGA------GG 131
||.||||| ||.|| || |||||...||||||| ||
BL00855___yac 94 TCTTCATC--GTCAG-CTCAAGAAGTCATTGCCCATATCGGAAAAAACGG 140
BSNT_00126___ 132 CAAGAGTGTGACAAGAGAAGAATGGCTGAAAGAAATGGAAGATCAGTATG 181
|| |.||..|.|||||||||||||..|||||||||||.|..||.|
BL00855___yac 141 CA------TCACGCGTGAAGAATGGCTGAGCGAAATGGAAGAGCGCTACG 184
BSNT_00126___ 182 GTAAGTCAACGCTTGAAGATATGATCAATGTCCGAGTTGTTGAGCAGCTG 231
|.||.|||||.|||||||||||||||||.|.|||.||.|||...||..||
BL00855___yac 185 GAAAATCAACCCTTGAAGATATGATCAACGACCGCGTAGTTACCCAAATG 234
BSNT_00126___ 232 GCTAAAAAGAACAACCTTAAAATATCCAAAAGCGAAGTTGATCGTGAGTT 281
||..||||.|||||..|.|||.|.||..|....||..||||..|.||.||
BL00855___yac 235 GCCGAAAAAAACAAGATCAAAGTGTCTGATGATGACATTGAAAGAGAATT 284
BSNT_00126___ 282 TTTGCTGATTAAAGCGGTCAATAATTCCTTTTACGAAGATGAACATACGA 331
|.|||||||||||||.||..|.||||||||.||||||||.|||.|.||.|
BL00855___yac 285 TCTGCTGATTAAAGCTGTATACAATTCCTTCTACGAAGACGAAAACACAA 334
BSNT_00126___ 332 CGGAGAAAGAGTGGAAAGACCAAATTCGTTATAATATCCTCCTTGAGGAA 381
|.||.|||||.||||||||.||.||.....|||||||.||.|||||.||.
BL00855___yac 335 CAGAAAAAGAATGGAAAGAGCAGATCAAGCATAATATTCTTCTTGAAGAG 384
BSNT_00126___ 382 TTGTTAACAAGGGATATCGATATCTCAAACAAAGAATTGGAATCATTCTA 431
.|..|.||||..||.||.|..||.||..|||..||||||.|.||||||||
BL00855___yac 385 CTCCTGACAAAAGACATTGTCATTTCTGACAGCGAATTGAAGTCATTCTA 434
BSNT_00126___ 432 TAATAAAAATAAGGAACTATATCAGTTTGATGATTCGTATCG----AATT 477
|||.|||||||||||..|||||.|.||.||||||||.||||| ||
BL00855___yac 435 TAACAAAAATAAGGACTTATATAAATTCGATGATTCTTATCGCCTCAA-- 482
BSNT_00126___ 478 CGGCACATTGTTGTAAAGGATGAAGAAGAAGCGAG-AGAAGTCCTGAAAG 526
|||.||.|||||.||.|||.||||.||||| || |.||||.||.||||
BL00855___yac 483 --GCATATCGTTGTCAAAGATAAAGATGAAGC-AGAACAAGTTCTTAAAG 529
BSNT_00126___ 527 AACTGAAAGGCGGATCAAGCTTTGAAGCTGTCGCTGCCGAAAGATCCACT 576
|||||||.|..||.||.||.||||||||.|.|||.||||||...||.|||
BL00855___yac 530 AACTGAAGGAAGGGTCCAGTTTTGAAGCGGCCGCAGCCGAACACTCGACT 579
BSNT_00126___ 577 GACAGATATACATCACCATACGGCGGAGATTTAGGTTTTGTCACAGA--G 624
|||.|.|||||..|.||.||||||||.||..|.|||||.||||..|| .
BL00855___yac 580 GACCGGTATACGGCTCCTTACGGCGGCGACCTCGGTTTCGTCAATGATCA 629
BSNT_00126___ 625 GCATCAGACAACATTCCATCAGCATACATTGAAG--AGGCGAAAACACTC 672
|||| ||.|||.||||..|.|.||| .|||.|| ||..|||.| |||.
BL00855___yac 630 GCAT--GAAAACGTTCCGGCCGAATA-TTTGGAGAAAGCTGAACA-ACTA 675
BSNT_00126___ 673 AAAGAGGATGAATGGTCTCAGGAACCAATAAAGGTCAACA----ACGGAT 718
||.||..||.|||||....|.|||||.||.|| |||| |.||.|
BL00855___yac 676 AAGGAAAATCAATGGGTGGATGAACCGATTAA----AACAAGCCAGGGCT 721
BSNT_00126___ 719 ATGCCATTATCCAGCTGAAAGAAAAACT--AAAGGCAAGAACGTTCTCAT 766
||||.|||||||||||.||||||||.|| ...|||||| |.|||.| |
BL00855___yac 722 ATGCGATTATCCAGCTCAAAGAAAAGCTCCCGGGGCAAG--CTTTCAC-T 768
BSNT_00126___ 767 TTGA-TGAAGTAAAGGACCAGATCAGACGGCAAATCGCAATGGATCAGCT 815
|..| .|||||.||..|.||.||||||.||||.|||||.||||||||..|
BL00855___yac 769 TACAGCGAAGTGAAAAATCAAATCAGAAGGCAGATCGCGATGGATCAATT 818
BSNT_00126___ 816 AGGCGATAAAGCGACAGTTAAGACACTTTGGAAAGAAGCCGATGTATCTT 865
||||||.|||||..|.||.|||||.||.||||||||.||..|..|.||||
BL00855___yac 819 AGGCGACAAAGCTTCTGTCAAGACGCTCTGGAAAGATGCGAAACTGTCTT 868
BSNT_00126___ 866 GGTTTTATGGGGAAAAAAGTACTAAGTGA 894
|||||||||..||.|||| |.|||
BL00855___yac 869 GGTTTTATGACGATAAAA--AATAA---- 891
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