Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02503 and BL00850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_02503___yllA.1.5803.seq
# -bsequence dna-align/BL00850___yllA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02503___yllA-BL00850___yllA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02503___yllA-BL00850___yllA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02503___yllA
# 2: BL00850___yllA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1740
# Identity: 1133/1740 (65.1%)
# Similarity: 1133/1740 (65.1%)
# Gaps: 243/1740 (14.0%)
# Score: 3394.0
#
#
#=======================================
BSNT_02503___ 1 ATGCAGCTAACTGAACTTTCCATCAAAAATCAGAATGTGTTTGTAC-AGC 49
||||||||.||||||||||||||..|||.|||.||....||||||| ||
BL00850___yll 1 ATGCAGCTTACTGAACTTTCCATACAAAGTCAAAACCCTTTTGTACGAG- 49
BSNT_02503___ 50 ACTATATAGATGGCAAAGAAGAAATGTCTTCTTTTTTTGATTACAGTATT 99
||||||||.||||.|||.|.||.||.....|.||||||||||||.|
BL00850___yll 50 ACTATATAAATGGAAAAAAGGAGATAGAGCCGTTTTTTGATTACGG---- 95
BSNT_02503___ 100 CATCATAAGGACATG-----TGGCGCGAAAGACTGGAAGACTTATCTTCC 144
|.|.||.| ||| |||.|.|...|..||||.|||.|.||.|||
BL00850___yll 96 ---CCTGAGCA-ATGAAAGTTGGAGTGTCCGTTTGGATGACCTTTCCTCC 141
BSNT_02503___ 145 CGGTTTTTCGCAAGA----GAGGAATTGGCGGCGTACTTAACCTCTTACC 190
||| .||.|.|| ||.|..||.||.|..||.|| .||| .||.
BL00850___yll 142 CGG----ACGTATGACCGCGATGCGTTAGCAGACTATTT--GCTC-GACT 184
BSNT_02503___ 191 ATAA---TAAAT-----TCGGTTCAAGTGCGATGCAGTCTGCTATTGA-- 230
||.| .|||| |||| ||| |.||| |.|||
BL00850___yll 185 ATCACCGCAAATTTCAATCGG--CAA---CCATG---------AATGAAA 220
BSNT_02503___ 231 -----GAA-------GCTGAAGGACCCGTCAAGTGCCGCTGTAGTCGGCG 268
||| || ||.|||..|||.|.||..||.|||||.|
BL00850___yll 221 CAATCGAACGCCTTCGC-----GATCCGAAAAGCGTCGTCGTTGTCGGAG 265
BSNT_02503___ 269 GACAGCAGGCAGGACTTTTAACAGGACCGCTTTACACCATACATAAAATC 318
|.||||||||.||.||||||||.||.||.||||||||.||||||||||||
BL00850___yll 266 GGCAGCAGGCCGGCCTTTTAACGGGTCCTCTTTACACTATACATAAAATC 315
BSNT_02503___ 319 ATTTCAATCATTGTTTTAGCAAAGCAACAAGAAAAGGAACTGCAAGTGCC 368
.|.||.|||.||.|.||||||||||||.|||||.|.||.|||.|.||.||
BL00850___yll 316 GTATCGATCCTTTTATTAGCAAAGCAAAAAGAACAAGAGCTGAACGTTCC 365
BSNT_02503___ 369 TGTCATACCAATCTTCTGGGTGGCTGGAGAAGACCACGATTTGGATGAGA 418
.|||||.||..|.||||||||.||.||.||||||||.|||.||||.||.|
BL00850___yll 366 GGTCATTCCGGTATTCTGGGTTGCGGGGGAAGACCATGATCTGGAAGAAA 415
BSNT_02503___ 419 TTAATTTTGTTCACACATCTGAAG------AGAATGGGCCTGTGAAAA-- 460
|.|||...||..|||..|||||.| || |||||||
BL00850___yll 416 TCAATCACGTCTACATTTCTGACGGCGGCAAG---------GTGAAAAAG 456
BSNT_02503___ 461 -AAAAGCTGCCTCAGTCTTATTGGAAGAAATCATCAGCC-----GCGAGT 504
|.|||||.||.|||||..|.|||||.||| |||| ||.|..
BL00850___yll 457 CACAAGCTCCCGCAGTCCCACTGGAAAAAA-----AGCCAGGCGGCAAAA 501
BSNT_02503___ 505 ACATCGCTTGAT-------CAG--GAAAAGTGTGCCGCGTGGATAGATGA 545
||..||||.||| .|| |||||||| || ||||..| ||
BL00850___yll 502 ACGGCGCTCGATGCCGAGAAAGCTGAAAAGTG----GC-TGGACGG--GA 544
BSNT_02503___ 546 TGTTTTTGCCGCTTTTGAAGAAACAGACCATACGAATACACTTCTCGACA 595
|||||||..|.|||||||||||.||..||||||||...|||||||.|.
BL00850___yll 545 --TTTTTGCTTCATTTGAAGAAACGGAGTATACGAATGATCTTCTCGGCC 592
BSNT_02503___ 596 ATGTGAAACGATGTTTAAGGGAATCTGTTACGTTTACTGACTTCTTTGAA 645
||.||...||||||||||||.|.|||.||.|.|||||.||.||.||.|||
BL00850___yll 593 ATTTGCGCCGATGTTTAAGGCAGTCTCTTTCTTTTACCGATTTTTTCGAA 642
BSNT_02503___ 646 CTGCTGATCGCGGATTTGTTCCAAGAAGAGGGCTTAGTTTTATTAAATTC 695
.|.||..|.||.||..||||..||.||||.|||||..|..|.||.|||||
BL00850___yll 643 TTTCTTGTTGCCGACATGTTTGAACAAGACGGCTTGATCCTTTTGAATTC 692
BSNT_02503___ 696 TGGGGATCCGGGGATTAAAAAGCTGGAAACGGCCATGTTCCAAAAGATTC 745
.||.||.|||||.||.|.|||.||.|||.||..|.|.||||...||.|.|
BL00850___yll 693 CGGAGACCCGGGCATCAGAAACCTTGAAGCGCGCTTTTTCCGGCAGCTGC 742
BSNT_02503___ 746 TTCGA-GAAAATGATGAACTCGCCCGGGCTGTATCAGA--TCAGCAGGCC 792
|.|| .||||.|||||.||..|| |.||.|.|||.| .|||||||..
BL00850___yll 743 -TGGACAAAAACGATGAGCTGACC--GACTCTGTCAAACGGCAGCAGGAA 789
BSNT_02503___ 793 TTCATGCGTCAAGCA----GGCTACAAACCGATTATCGA---GTCCGGAA 835
||.||| ||.|| ||.||||.|||||||||||| |.|||.|.
BL00850___yll 790 TTGATG----AAACAACTGGGTTACACACCGATTATCGAAGGGGCCGCAC 835
BSNT_02503___ 836 AAGAGCAGGCGAATCTGTTTTATGAATACGAAGAAGAGCGTTTTTTAATT 885
|| ||.|||||..|.||||||||...|||.|..|||||.|||||||||
BL00850___yll 836 AA---CATGCGAACATTTTTTATGAGCGCGACGGCGAGCGGTTTTTAATT 882
BSNT_02503___ 886 GAAAAAGATAACGGC-CGATTTGTCATCAAAGAGCTTGATCT--AGGATG 932
||||||||.|||||| || |||.|.||.|||||||||.|||| || ||
BL00850___yll 883 GAAAAAGAAAACGGCGCG-TTTTTTATAAAAGAGCTTCATCTTCAG--TG 929
BSNT_02503___ 933 GAC-GATGGATGAACTTCATAC----ACATATGGAAGAACATCCAG-AGC 976
|.| ||.|.| ||.||| |.| ..||.||..||||| ||.| |||
BL00850___yll 930 GTCTGAAGCA-GAGCTT--TGCGATTTGATCTGCCAGAAC--CCGGAAGC 974
BSNT_02503___ 977 GTTTCAGCAACAATGTTGTAACGAGACCGTTAATGCAGGAATTTCTCATT 1026
| ||||||||.|||||.|||||..|.|||.|.||||||||||.|||..||
BL00850___yll 975 G-TTCAGCAATAATGTCGTAACCCGGCCGCTCATGCAGGAATATCTTCTT 1023
BSNT_02503___ 1027 CCGACTTTAGCATTTATTGCAGGGCCTGGAGAAATCAACTATTGGGGCGA 1076
|||||.||.||.||.||.||.||.||.|||||.|||||.|||||||||||
BL00850___yll 1024 CCGACATTGGCGTTCATCGCCGGTCCCGGAGAGATCAATTATTGGGGCGA 1073
BSNT_02503___ 1077 GCTCAAACAGGCTTTTGCGGTGATGGGTTTCAAAATGCCTCCTGTCATGC 1126
|||.|||...||||||..|||.|||||.|..||||||||.||||||.|.|
BL00850___yll 1074 GCTGAAAGGCGCTTTTCAGGTCATGGGCTATAAAATGCCGCCTGTCGTAC 1123
BSNT_02503___ 1127 CAAGGCTGAACATTACGATACTTGAGCGGCATATTGAGAAAAAACTGGCT 1176
|.|||||..|..||||..|.|||||.|||||.||.||.|||||.||||..
BL00850___yll 1124 CGAGGCTTCAGGTTACATTCCTTGAACGGCACATCGAAAAAAAGCTGGAC 1173
BSNT_02503___ 1177 GAAC--GGAAT--ATCTCGTTACAAGACGCGATTGA-----GAGCGGAAC 1217
|||| ||||| |.||| |..||..||||||| ||||| |
BL00850___yll 1174 GAACGGGGAATCGAACTC----CGCGAATCGATTGAAAAGGGAGCG---C 1216
BSNT_02503___ 1218 GGAGAATCAAAGAG-AG--------ACATACTTCGAGCGCCAGATTCCGG 1258
||...|..|||||| || |.||| ||.|||||
BL00850___yll 1217 GGGCCAAAAAAGAGCAGTATTTTCAAGATA-----------AGGTTCCG- 1254
BSNT_02503___ 1259 AAGAG--TTTACGG---CGGTGATGGATCAGGCGAAAAGCCAAATTGAAG 1303
||.| |||||.| ||||.| |.|||||||||....||||.|||.
BL00850___yll 1255 -AGCGGATTTACCGATTCGGTCA---AACAGGCGAAAGAAAAAATCGAAA 1300
BSNT_02503___ 1304 CGATTCA-----CAAAACGGTCCG-GCAGGAGGCGTTAAAGGTTGATCAA 1347
..||||| || ||.|| ||.|.||.|.|..|| |||.|
BL00850___yll 1301 ACATTCATTCCGCA-----GTGCGCGCCGAAGCCCTCGAA-----ATCGA 1340
BSNT_02503___ 1348 ----AGCATGGAACC---TTTACTCCTG--AAAAATGCCGCTTTTATTCA 1388
|||.|.|..|| |||| | |||||.||.|..||.|||||
BL00850___yll 1341 CGGCAGCCTCGGCCCCCTTTTA-----GAAAAAAACGCGGGCTTCATTCA 1385
BSNT_02503___ 1389 GGATCAGCTTCAATTCTTAGAGCACACGGTGA--CGAAGCGAATTGAAGA 1436
.||||||||.|||||.||.|||.|.||.||.| .||| |.||||||||
BL00850___yll 1386 AGATCAGCTCCAATTTTTGGAGAAAACAGTCATCAGAA--GGATTGAAGA 1433
BSNT_02503___ 1437 AAAAGAAGGCTACGTCTTGAAGGATTATGAAAGAATTCAAAATAGCATTA 1486
|||||||..|||..|.|||...||||.|||.|.||||||||..|||||.|
BL00850___yll 1434 AAAAGAAAACTATATTTTGCGTGATTTTGACAAAATTCAAACAAGCATCA 1483
BSNT_02503___ 1487 AGCCGCTTCTT-----GCGCCGCAAGAACGGATTTGGAATATCATGTATT 1531
|.| ||| ||.||.||.||..|.||||||||.|||.||||||
BL00850___yll 1484 AAC-----CTTTAGACGCTCCCCAGGAGAGAATTTGGAACATCGTGTATT 1528
BSNT_02503___ 1532 ATTTGAACAGGTACGGTCCAAAATTCTTCACGACATTCAAGAATCTGCCA 1581
|||||||||..||||||||..|.|||||....|.||.||||.||.|||||
BL00850___yll 1529 ATTTGAACAAATACGGTCCGGATTTCTTGGAAAAATACAAGGATTTGCCA 1578
BSNT_02503___ 1582 TTTTCTTTTCAAAATCA-ACATCAAGTTGTCAAACTTTGA 1620
|.|||.|||||||| || .|||||||||||||||||||||
BL00850___yll 1579 TATTCATTTCAAAA-CATGCATCAAGTTGTCAAACTTTGA 1617
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