Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01035 and BL00844
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_01035___ydiD.1.5803.seq
# -bsequence dna-align/BL00844___ydiD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01035___ydiD-BL00844___ydiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01035___ydiD-BL00844___ydiD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01035___ydiD
# 2: BL00844___ydiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 484
# Identity: 323/484 (66.7%)
# Similarity: 323/484 (66.7%)
# Gaps: 53/484 (11.0%)
# Score: 987.0
#
#
#=======================================
BSNT_01035___ 1 ATGAAAA--CAAAAGCAGCGGTCAGAAATATGCGGCTTGAA-------GA 41
|||||.| |||| .|||| |||.|||...|||| ||
BL00844___ydi 1 ATGAACACGCAAA-----TGGTC----ATACGCGATATGAATCCAAAGGA 41
BSNT_01035___ 42 TATAGATCACGTATACGAAATCGAAGCATCCTCCTTTACGTCTCCTTGGA 91
|.|.||.||.||.|..|||||.|||..|..|||.|||.|.|||||.||||
BL00844___ydi 42 TTTGGACCAGGTTTTTGAAATTGAAAAAAGCTCTTTTTCTTCTCCGTGGA 91
BSNT_01035___ 92 CGAAGGATTCGTTTTATCATGAGCTGCTGGAAAATCCGTATGCTCATTAT 141
..||.||.||.|||.||||||||||..|..|.|||..|||||||||||||
BL00844___ydi 92 AAAAAGAATCTTTTCATCATGAGCTTTTTCACAATATGTATGCTCATTAT 141
BSNT_01035___ 142 CTCGTGATTGAA---AAGGACGGCTA-TCTTGCTGGGTATTGCGGGATTT 187
|||||..|.||| .|||| ||.| || |..||.||.||||||||||
BL00844___ydi 142 CTCGTTCTCGAAGTTGAGGA--GCAAGTC--GTCGGCTACTGCGGGATTT 187
BSNT_01035___ 188 GGATTGTGATGGACGATGCCCAAATTACAAATATAGCGATAAAACCAGAG 237
||||.||.|||||.||.|||||.||.||.|||||.||..|...|||.|..
BL00844___ydi 188 GGATCGTAATGGATGACGCCCAGATCACCAATATTGCCGTTTCACCTGCA 237
BSNT_01035___ 238 TATCGCGGCCAGTC-TTTAGGAGAAACGCTTTT----TCGCTCAGCTGTT 282
||.||.|||| |.| .||.||.|||.|.||||| .||..|| |
BL00844___ydi 238 TACCGGGGCC-GCCGCTTCGGTGAAGCTCTTTTGAAGGCGGCCA-----T 281
BSNT_01035___ 283 GAA-CTGTGC--AAAGAAAAAGACG---CAAGGCGGCTTTCGCTTGAAGT 326
||| ||.||| .|.|||||.|.|| || ||||||..|.||.||
BL00844___ydi 282 GAAGCTTTGCCGGATGAAAAGGGCGGTTCA-----GCTTTCTTTAGAGGT 326
BSNT_01035___ 327 GAGGGTTTCGAATCATCCTGCTCAAGGCTTATATAAGAAATTCGGGATGC 376
||||||.|||||||||..|||.||..|||||||.||.||..||||..|..
BL00844___ydi 327 GAGGGTATCGAATCATATTGCACAGAGCTTATACAAAAAGCTCGGCTTTG 376
BSNT_01035___ 377 AGCCCGGCGGAATAAGAAAGAACTATTATACTGATAACGGGGAAGATGCG 426
||||.||.|||||..|.||.||.||||||||.|||||.|||||||||||.
BL00844___ydi 377 AGCCGGGAGGAATTCGCAAAAATTATTATACCGATAATGGGGAAGATGCA 426
BSNT_01035___ 427 TTAATTATGTGGGTGACGA-TAAATGAGTGA--- 456
|||.|.|||||||||| || |||||||.|.|
BL00844___ydi 427 TTATTAATGTGGGTGA-GACTAAATGAATCATAA 459
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