Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04449 and BL00839
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_04449___pckA.1.5803.seq
# -bsequence dna-align/BL00839___pckA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04449___pckA-BL00839___pckA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04449___pckA-BL00839___pckA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04449___pckA
# 2: BL00839___pckA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1611
# Identity: 1196/1611 (74.2%)
# Similarity: 1196/1611 (74.2%)
# Gaps: 54/1611 ( 3.4%)
# Score: 4300.0
#
#
#=======================================
BSNT_04449___ 1 ATGAACTCAGTTGATTTGACCGCTGATTTACAAGCCTTATTAAC------ 44
|||||.||.||.|||||.||..||||.||||||.|..|||||||
BL00839___pck 1 ATGAATTCTGTAGATTTAACAACTGACTTACAAACGCTATTAACGGGCGA 50
BSNT_04449___ 45 --ATGTCCAAATGTGCGTCATAATTTATCTGCAGCACA----GCTAACAG 88
|.||.||.||| ||.|||||.|...|.|| |.| |
BL00839___pck 51 AAACGTTCAGATG--------AACTTATCCGTTCCCCATTTGGTT----G 88
BSNT_04449___ 89 AAAAAGTCCTCTCCCGAAACGAAGGCATTTTAACATCCACAGGTGCTGTT 138
||||..||||....||.||.|||||..|.||.|||||..|.||.||.||.
BL00839___pck 89 AAAAGATCCTTGAGCGCAAAGAAGGAGTCTTGACATCTTCCGGAGCCGTG 138
BSNT_04449___ 139 CGCGCGACAACAGGCGCTTACACAGGACGCTCACCTAAAGATAAATTCAT 188
||.||.|||||.||..|.|||||.||.|||||.||.|||||.||||||||
BL00839___pck 139 CGGGCAACAACCGGTACATACACCGGCCGCTCGCCAAAAGACAAATTCAT 188
BSNT_04449___ 189 CGTGGAGGAAGAAAGCACGAAAAATAAGATCGATTGGGGCCCGGTGAATC 238
.|||||.||||..|||||.||..|.||.||||||||||||.|.||.||.|
BL00839___pck 189 TGTGGAAGAAGCGAGCACAAAGGACAAAATCGATTGGGGCGCAGTAAACC 238
BSNT_04449___ 239 AGCCCATTTCAGAAGAAGCGTTTGAGCGGCTGTATACGAAAGTTGTCAGC 288
||||.||||||||||..||.|||||.||||||||..|.|||||..||.||
BL00839___pck 239 AGCCGATTTCAGAAGCCGCCTTTGACCGGCTGTACGCAAAAGTGCTCGGC 288
BSNT_04449___ 289 TATTTAAAGGAGCGAGATGAACTGTTTGTTTTCGAAGGATTTGCCGGAGC 338
|||||||||||.||.||||||.|||.|||.||.|||||.|||||.|||||
BL00839___pck 289 TATTTAAAGGAACGCGATGAATTGTATGTATTTGAAGGGTTTGCAGGAGC 338
BSNT_04449___ 339 AGACGAGAAATACAGGCTGCCGATCACTGTCGTAAATGAGTTCGCATGGC 388
||||||.||||||.||||.|||||.|||||.||.||.||||||||.||||
BL00839___pck 339 AGACGAAAAATACCGGCTTCCGATTACTGTTGTCAACGAGTTCGCCTGGC 388
BSNT_04449___ 389 ACAATTTATTTGCGCGGCAGCTGTTTATCCGTCCGGAAGGAAATGATAAG 438
||||..|.|||||..|.|||.||||.|||.|.||.||||.|.|||||||.
BL00839___pck 389 ACAACCTGTTTGCAAGACAGTTGTTCATCAGACCTGAAGAACATGATAAA 438
BSNT_04449___ 439 AAAACAGTTGAGCAGCCGTTCACCATTCTTTCTGCTCCGCACTTCAAAGC 488
|||.|.|..||.||||||||.||.||||||||.||||||||.||||||||
BL00839___pck 439 AAACCTGAAGAACAGCCGTTTACGATTCTTTCAGCTCCGCATTTCAAAGC 488
BSNT_04449___ 489 GGATCCAAAAAC----AGACGGCACTCA-TTCCGAAACGTTTATTATTGT 533
.||||| .| .|||||.|| || .||.|||||||||||.||.||
BL00839___pck 489 CGATCC----GCTCGTTGACGGAAC-CAGATCTGAAACGTTTATCATCGT 533
BSNT_04449___ 534 CTCTTTCGAAAAGCGGACAATTTTAATCGGCGGAACTGAGTATGCCGGTG 583
.||.||.||.||||||||.||.||||||||.||.||.||.||||||||.|
BL00839___pck 534 GTCGTTTGAGAAGCGGACGATCTTAATCGGAGGCACCGAATATGCCGGAG 583
BSNT_04449___ 584 AAATGAAGAAGTCCATTTTCTCCATTATGAATTTCCTGCTGCCTGAAAGA 633
|.|||||.||.||.|||||.||.|||||||||||.||.|||||||||..|
BL00839___pck 584 AGATGAAAAAATCGATTTTTTCTATTATGAATTTTCTTCTGCCTGAACAA 633
BSNT_04449___ 634 GATATTTTATCTATGCACTGCTCCGCCAATGTCGGTGAAAAAGGC-GATG 682
.|.|||.||.|.||||||||.||.||.||..|.||.||..||||| ||..
BL00839___pck 634 AACATTCTACCGATGCACTGTTCGGCAAACATTGGCGAGGAAGGCGGAAC 683
BSNT_04449___ 683 TCGCCCTTTTCTTCGGACTGTCAGGAACAGGAAAGACCACCCTGTCGGCA 732
| ||.||.|||||||||.|||||||.|||||.||.||.||.||.||.||.
BL00839___pck 684 T-GCTCTCTTCTTCGGATTGTCAGGTACAGGCAAAACGACGCTTTCCGCC 732
BSNT_04449___ 733 GATGCTGACCGCAAGCTGATCGGTGACGATGAACATGGCTGGTCTGATAC 782
|||.|..|.||.|||||||||||.|||||.|||||.||||||||....||
BL00839___pck 733 GATCCGAAGCGGAAGCTGATCGGCGACGACGAACACGGCTGGTCCAGCAC 782
BSNT_04449___ 783 AGGCGTCTTTAATATTGAAGGCGGGTGCTACGCTAAGTGCATTCATTTAA 832
||||||.||.||.||||||||.||.||||||||.||.||||||.|.||||
BL00839___pck 783 AGGCGTTTTCAACATTGAAGGAGGCTGCTACGCCAAATGCATTAACTTAA 832
BSNT_04449___ 833 GCGAGGAAAAGGAGCCGCAAATCTTTAACGCGATCCGCTTCGGGTCTGTT 882
||||.|||||.||.|||||.||.|..||.||||||||||||||.||.|||
BL00839___pck 833 GCGAAGAAAAAGAACCGCAGATTTACAATGCGATCCGCTTCGGTTCCGTT 882
BSNT_04449___ 883 CTCGAAAATGTCGTTGTGGATGA-AGATACACGCGA-AGCC-AATTATGA 929
|||||||||||| ||||.||| ||..|.||..|| |||| .|.|||..
BL00839___pck 883 CTCGAAAATGTC---GTGGTTGACAGCAAAACCGGAGAGCCGGACTATTC 929
BSNT_04449___ 930 TGATTCCTTCTATACTGAAAACACGCGGGCAGCTTACCCGATTCATATGA 979
.||.||.|||||.||.||||||||..|.||.||||||||||||.|...||
BL00839___pck 930 CGACTCATTCTACACGGAAAACACTAGAGCGGCTTACCCGATTGACGCGA 979
BSNT_04449___ 980 TTGACAACATCGTGACTCCAAGCATGGCCGGCCATCCGTCAG-CAATTGT 1028
|||||||||||||.|..||.|||||.||.|..||.||| ||| |.||.||
BL00839___pck 980 TTGACAACATCGTCAAGCCGAGCATCGCAGCGCACCCG-CAGACCATCGT 1028
BSNT_04449___ 1029 ATTTTTGACGGCTGATGCCTTCGGAGTCCTGCCGCCGATCAGCAAACTAA 1078
|||||||||.||.|||||.|||||.||.||.||.|||||||||||..|||
BL00839___pck 1029 ATTTTTGACCGCAGATGCTTTCGGCGTGCTTCCTCCGATCAGCAAGTTAA 1078
BSNT_04449___ 1079 CGAAGGAGCAGGCCATGTACCATTTCTTGAGCGGTTACACGAGTAAGCTC 1128
||||.||.||.||||||||.||||||.|||||||.||.||.||.||||||
BL00839___pck 1079 CGAAAGAACAAGCCATGTATCATTTCCTGAGCGGATATACAAGCAAGCTC 1128
BSNT_04449___ 1129 GCCGGAACCGAACGTGGTGTCACGTCTCCTGAAACGACGTTCTCTACATG 1178
|||||.||||||||.||..||||..||||||||.|.||.|||||.||.||
BL00839___pck 1129 GCCGGCACCGAACGCGGGATCACCACTCCTGAAGCCACATTCTCGACCTG 1178
BSNT_04449___ 1179 CTTCGGCTCACCGTTCCTGCCGCTTCCTGCTCACGTCTATGCTGAAATGC 1228
||||||.|||||||||||.||||||||.||.||.||.||.||||||||||
BL00839___pck 1179 CTTCGGTTCACCGTTCCTCCCGCTTCCGGCACATGTGTACGCTGAAATGC 1228
BSNT_04449___ 1229 TCGGCAAAAAGATCGATGAACACGGGGCAGACGT-TTTCTTAGTCAATAC 1277
||||.|.|||.||||||||.|||||||..|.||| |||| |.||||||||
BL00839___pck 1229 TCGGAAGAAAAATCGATGAGCACGGGGTCGGCGTCTTTC-TCGTCAATAC 1277
BSNT_04449___ 1278 CGGCTGGACCGGGGGCGGCTACGGCACAGGCGAACGAATGAAGCTTTCTT 1327
.|||||||||||.|||||.|||||.||.||.|||.||||||..||..|.|
BL00839___pck 1278 AGGCTGGACCGGCGGCGGATACGGAACCGGGGAAAGAATGAGCCTCGCAT 1327
BSNT_04449___ 1328 ACACTAGAGCAATGGTCAAAGCAGCGATTGAAGGTAAATTAGAGGATGCT 1377
|.||.|||||.|||||..|.||.||.||.|||||..||.|.||..|.||.
BL00839___pck 1328 ATACGAGAGCGATGGTTCAGGCCGCAATAGAAGGAGAACTGGATAAAGCC 1377
BSNT_04449___ 1378 GAAATGATAACTGACGATATTTTCGGCCTGCACATT--CCGGCCCATGTT 1425
|||||||..||||||...||||||||.|| .|||| ||.|.|||.|||
BL00839___pck 1378 GAAATGAGGACTGACCGCATTTTCGGACT--TCATTCACCTGTCCACGTT 1425
BSNT_04449___ 1426 CCTGGCGTTCCTGATCATATCCTTCAGCCTGAAAACACGTGGACCAACAA 1475
||.||.||.||||||||..|.|||.|.||.|..||.||.||||| |.|.
BL00839___pck 1426 CCGGGTGTGCCTGATCAAGTGCTTGACCCGGCCAAAACTTGGAC--AGAT 1473
BSNT_04449___ 1476 GGAA--GAATACAAAGAAAAGGCAGTCTACCTTGCAAATGAATTCAAAGA 1523
|.|| ||||||.|.|||||.||..||.||||.||.||.|.|||||||.|
BL00839___pck 1474 GAAAACGAATACGAGGAAAAAGCGATCCACCTGGCGAAAGCATTCAAACA 1523
BSNT_04449___ 1524 GAACTTTAAAAAGTTCGCACATACCGATGCCATCGCCCAGGCAGGCGGCC 1573
|||.||.|||||||||.|..||||.||...|||||...|.||.||.||.|
BL00839___pck 1524 GAATTTCAAAAAGTTCTCCAATACGGAAAACATCGAAAAAGCCGGAGGAC 1573
BSNT_04449___ 1574 CTCTCGTATAA 1584
|.|||||.|||
BL00839___pck 1574 CGCTCGTTTAA 1584
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