Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03540 and BL00811

See Amino acid alignment / Visit BSNT_03540 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03540___yqjN.1.5803.seq
#    -bsequence dna-align/BL00811___yqjN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03540___yqjN-BL00811___yqjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03540___yqjN-BL00811___yqjN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03540___yqjN
# 2: BL00811___yqjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1713
# Identity:    1173/1713 (68.5%)
# Similarity:  1173/1713 (68.5%)
# Gaps:         177/1713 (10.3%)
# Score: 3773.5
# 
#
#=======================================

BSNT_03540___      1 ATGAATTGGCAGACGAAGGACGAATTGCTGGCA---CTTTTAACTTCTCT     47
                     .||||.||||||||...|||.|||   |||..|   ||..|.|.||||||
BL00811___yqj      1 GTGAAGTGGCAGACAGTGGAAGAA---CTGAAACGGCTGCTCATTTCTCT     47

BSNT_03540___     48 TGTGCAATACGAAAGCATCACCGGTTCAAAG--GGCGAGGCAGCACTTGC     95
                     |||.|||||||||||||||.|.||  ||..|  ||.||.|..||.|||||
BL00811___yqj     48 TGTTCAATACGAAAGCATCTCAGG--CACGGCCGGAGAAGTGGCGCTTGC     95

BSNT_03540___     96 AGAGTATCTTTATTTTATTTTGAAGGACAAGCCCTATTTTCAAAATCACC    145
                     ..|.|||.|..||..|.|.||.||||||....|.||.||||||||..|.|
BL00811___yqj     96 GAAATATATGCATGATGTCTTAAAGGACCGTTCGTACTTTCAAAAGAATC    145

BSNT_03540___    146 CTGATGATGTAACACTTCATCCGATGGACGATGGCAGATCTTTTCTTACG    195
                     ||||..|..|||..|||||.||||||||.|||||..|.|.||||.|.||.
BL00811___yqj    146 CTGAATACTTAAAGCTTCACCCGATGGAGGATGGGCGCTATTTTTTAACC    195

BSNT_03540___    196 GCTCTAGTCAAAAAG---AAGAATGTCAAAAAGACAGTGCTTCTGCTGAG    242
                     ||.||.|||||||||   ||||| .||  |||.||.|||||.||..||||
BL00811___yqj    196 GCCCTCGTCAAAAAGGAAAAGAA-ATC--AAATACGGTGCTCCTCTTGAG    242

BSNT_03540___    243 TCATTTTGATGTCGTTGACATAGAAGATTACGGCGAATTTAAACATATGG    292
                     .||||||||.||.||.||.|..|.|||.|||||.|||||.||||||||||
BL00811___yqj    243 CCATTTTGACGTGGTCGATACGGCAGACTACGGAGAATTCAAACATATGG    292

BSNT_03540___    293 CTTGCAA--GCCTGCTGAGCT-TTTGAGCTCCTTTTTA--GAGAAAAAAG    337
                     |.|||||  .||  |.||.|| .|.||   |||.||.|  ||.|||||||
BL00811___yqj    293 CATGCAAAGTCC--CGGAACTCATGGA---CCTATTAAATGATAAAAAAG    337

BSNT_03540___    338 AGCTGCTCCCGGAACGGGTGAGAAGAGATGCC--GAAAGCGGAGACTGGC    385
                     |.||..|.||.||||||||.|.||.|||  ||  ||||||||.||.||||
BL00811___yqj    338 AACTTTTGCCTGAACGGGTCAAAAAAGA--CCTGGAAAGCGGCGAATGGC    385

BSNT_03540___    386 TGTTCGGAAGAGGGACG-ATGGATATGAAAGCGGGGCTTTGTGTTCAACT    434
                     |||||||.|| ||||.| |||||||||||||||||.|||..|||||||.|
BL00811___yqj    386 TGTTCGGTAG-GGGAAGCATGGATATGAAAGCGGGTCTTGCTGTTCAATT    434

BSNT_03540___    435 GTCGATGCTGGAGAGGGCAATGAACGGACATTTTGAGGGCAATCTGCTGT    484
                     .||.||||||||..||||.|||||||||.|.|||||.||.||.||.||.|
BL00811___yqj    435 TTCTATGCTGGAACGGGCGATGAACGGAGAATTTGACGGAAACCTTCTAT    484

BSNT_03540___    485 TGATAACGGTTCCGGACGAGGAAGTGAATTC-AAGAGGCATGATTGAAGC    533
                     |.||.||||||||||||||.|||||.||.|| .|| ||.|||.|||||||
BL00811___yqj    485 TAATTACGGTTCCGGACGAAGAAGTCAACTCGCAG-GGGATGCTTGAAGC    533

BSNT_03540___    534 GGTTCCTGCATTGAAGGAAATGGAGAAAAAGCAT---GATATCACATTA-    579
                     .||.||||.|.||||  |..|..||||||||.||   |...|  ||||| 
BL00811___yqj    534 AGTACCTGTACTGAA--AGCTTTAGAAAAAGAATTTGGCCTT--CATTAT    579

BSNT_03540___    580 ACTGCTTGCCTGAA-TGCCGAACCGATGTTTGAAAAATTTCCCGGCGATC    628
                     ||.||.|||.|.|| || .||.|||||||||||||||..|||.||.||||
BL00811___yqj    580 ACAGCGTGCTTAAACTG-TGAGCCGATGTTTGAAAAACATCCGGGTGATC    628

BSNT_03540___    629 AGCAGCAATATTTTTATACTGGAAGCATTGGCAAGGTGCTTGCGGGTTTT    678
                     .|.||||.||..|.|||.|.||.|||||.|||||.|.||||||.||.|||
BL00811___yqj    629 CGAAGCAGTACGTCTATTCAGGCAGCATCGGCAAAGCGCTTGCCGGATTT    678

BSNT_03540___    679 TTCTGCAAGGGGATTGAGACACATGTTGGAGAGCCGTTTTCAGGCCTAAA    728
                     ||||||||.|||.|||||||.|||||.||.|||||||||.||||..|.||
BL00811___yqj    679 TTCTGCAAAGGGGTTGAGACGCATGTCGGCGAGCCGTTTGCAGGGGTGAA    728

BSNT_03540___    729 CGCAAATTTAATGGTATCTGAGATTAACCGTTTGCTTGAACTGAATGCTG    778
                     .||.|||.|||||||.||||||||.|||.|..||||.|||.|.||.|..|
BL00811___yqj    729 TGCGAATCTAATGGTGTCTGAGATCAACAGGCTGCTCGAATTAAACGTCG    778

BSNT_03540___    779 ATTATTGCGAAAAGGTTGATGGCGAGGTCACTCCGCCGCCGGTAAACTTA    828
                     |.|||||||||.|.|..||.||.|||||.||.||.||.||||..||..|.
BL00811___yqj    779 ACTATTGCGAAGAAGCGGACGGAGAGGTGACGCCTCCCCCGGCCAATCTG    828

BSNT_03540___    829 ATGCAAAAGGACTTGAAAGAGGCATATTCAGTCCAGACACCGCATACAGC    878
                     ||||||||.||..||||.|||||.||.||.||.|||||.||.||.|||||
BL00811___yqj    829 ATGCAAAAAGATCTGAAGGAGGCCTACTCGGTTCAGACTCCTCACACAGC    878

BSNT_03540___    879 --TGTCACATTATTTAATGTGCTGTCAATGAAACGCTCAGCTAGTGAGCT    926
                       ||||.|  |.||||||||||||...|||.|.||.||.||....|||||
BL00811___yqj    879 GGTGTCGC--TCTTTAATGTGCTGATGATGCAGCGTTCCGCCGCCGAGCT    926

BSNT_03540___    927 GCATCAGATGCTGCTTAAAACAGCAGAACAG----GCGGCGGAGGAAAT-    971
                     .||||..||||||||..|.|||||    |||    |||||.|...|.|| 
BL00811___yqj    927 CCATCGCATGCTGCTCGACACAGC----CAGGGAAGCGGCCGCCAATATT    972

BSNT_03540___    972 ------CATGTCGAACGTTCGGAAGAAAACACAGGATTTTCAACAATTTG   1015
                           .||.||||||||       |||||....||.|.|||.|..||||
BL00811___yqj    973 CAAACAAATATCGAACGT-------AAAACGGCCGAATATCAGCGGTTTG   1015

BSNT_03540___   1016 -AGCCATTTCA-GCCGATTGAGCGGGACGTCACTGTTTTGACATTTGATG   1063
                      ||||  |||| |||.|||.|.|.||.|||..|.||..||||.|||||.|
BL00811___yqj   1016 AAGCC--TTCACGCCAATTAACCCGGCCGTTTCCGTGATGACGTTTGAGG   1063

BSNT_03540___   1064 AGCTGGTCTCGCGTGCA------------AAAAAGCGTGCGGGGATCTCG   1101
                     ||||        |||.|            |||||||   ||||.|.|.||
BL00811___yqj   1064 AGCT--------GTGGAACAAAGCACAGGAAAAAGC---CGGGAAGCCCG   1102

BSNT_03540___   1102 GAAACAGAGCGG---GC--TCTAAATTATGCCTTTGCTAACAGGGGGGAG   1146
                          || ||||   ||  .||.||.|.|||.|||||.||||||||||||
BL00811___yqj   1103 -----AG-GCGGAACGCATCCTCAACTTTGCATTTGCGAACAGGGGGGAG   1146

BSNT_03540___   1147 CTTGGAGACAGGGATTTTTCGACGAAAATTGTTTCTGAGCTTGCTTCGCT   1196
                     |||||||||.|.||.|||||.||||||||.||.|||||..|.|||||.||
BL00811___yqj   1147 CTTGGAGACCGCGACTTTTCAACGAAAATCGTCTCTGAATTGGCTTCACT   1196

BSNT_03540___   1197 TTGTAAGGAGGATGCGCCGCTCATCGTTCTGTTTTATAGTCCGCCGCTTT   1246
                     .||.||.||.|||||.|||.|.||||||||||||||.|||||||||.|||
BL00811___yqj   1197 CTGCAAAGAAGATGCTCCGATGATCGTTCTGTTTTACAGTCCGCCGTTTT   1246

BSNT_03540___   1247 ATCCAGCTGTTTCTTCAAAGGATGATCAATTGATCAGAAATACAGCAGAT   1296
                     ||||.|||||||||||||||||.||||...|||||.|||    ||..|||
BL00811___yqj   1247 ATCCGGCTGTTTCTTCAAAGGACGATCCTCTGATCCGAA----AGGTGAT   1292

BSNT_03540___   1297 CAG----TTAAAGCATTATGCGGCTGAGCGATACGGCATTGCA-TTACGG   1341
                     .||    .|.|||||.||||||||.||..|..||||.||||.| |||| .
BL00811___yqj   1293 GAGAGAAGTGAAGCAGTATGCGGCCGACAGGCACGGAATTGAATTTAC-A   1341

BSNT_03540___   1342 GAAGTTCAGTACTTCCCTGGACTTTCGGACTTGAGTTATCTTCAGCTGGA   1391
                     |||||.||.||.|||||.||.||.||.||.||.||.||.||.||||||.|
BL00811___yqj   1342 GAAGTCCAATATTTCCCCGGCCTGTCCGATTTAAGCTACCTGCAGCTGCA   1391

BSNT_03540___   1392 AAAGCAGGAGGTTGATGCATACACAAGCAATATGCCGCTCTTT-AACAGA   1440
                     |||.|||...||.|||||.|.||||..||||||||||||.||| |.|| .
BL00811___yqj   1392 AAAACAGTCAGTCGATGCGTTCACATCCAATATGCCGCTTTTTCATCA-C   1440

BSNT_03540___   1441 GGATATTCATTGCCAA------GCGGTAAAAATCAGGCT-TTATATGTCC   1483
                     ||.||||||.|.||||      |||  ||||..||  || ||   |||.|
BL00811___yqj   1441 GGCTATTCACTTCCAAAAGGACGCG--AAAACGCA--CTGTT---TGTGC   1483

BSNT_03540___   1484 CGGTTTTAAATGTCGGTCCGGCTGGTAAAGACCCGCATAAATGGACGGAA   1533
                     ||||..|.|||.||||.|||||.||.|||||.||.||.||||||||||||
BL00811___yqj   1484 CGGTCATCAATATCGGGCCGGCCGGCAAAGATCCTCACAAATGGACGGAA   1533

BSNT_03540___   1534 AGATTGTATATGCCTTATTCCTTTGAAGTGCTTCCCGATTTGCTTTCATT   1583
                     .|..|..||.||||.|.|||.||||.|..|||.||.|||           
BL00811___yqj   1534 CGTCTCCATGTGCCGTTTTCATTTGGAAAGCTGCCAGAT-----------   1572

BSNT_03540___   1584 TACGAT-CTCCGCGCTATTAAAGCAAT-CAGAATCTGCCGGCCAGCTGCT   1631
                         || ||||| |||     .||.|| ||           |.||||.||
BL00811___yqj   1573 ----ATCCTCCG-GCT-----CGCGATACA-----------CAAGCTTCT   1601

BSNT_03540___   1632 GCGGGAAAAATAA   1644
                              .|||
BL00811___yqj   1602 ---------CTAA   1605


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