Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03537 and BL00810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03537___yqjP.1.5803.seq
# -bsequence dna-align/BL00810___yqjP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03537___yqjP-BL00810___yqjP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03537___yqjP-BL00810___yqjP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03537___yqjP
# 2: BL00810___yqjP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1056
# Identity: 627/1056 (59.4%)
# Similarity: 627/1056 (59.4%)
# Gaps: 198/1056 (18.8%)
# Score: 1687.5
#
#
#=======================================
BSNT_03537___ 1 ATGACA-ACTGAAGATGTAATTGCGATCCGC-GTCCCGACGCCGTTTGCT 48
||||.| ||..|||| .|.|||.|.|| .|| .|.|||||.||||||||.
BL00810___yqj 1 ATGAAAGACGCAAGA-ATCATTCCTAT-TGCACTGCCGACTCCGTTTGCA 48
BSNT_03537___ 49 GTCGGTGATGTTATCGTTTACCTCGTAAAAGGTGATGCACTGACACTTAT 98
|||||.||.||.|.|.||||..|..|.|.|||.||.||.||.||.||..|
BL00810___yqj 49 GTCGGAGACGTCAACATTTATTTGCTCAGAGGCGAGGCGCTCACTCTGGT 98
BSNT_03537___ 99 TGATGCAGGGCCGAATACAAAAGAGGCTGCCAGAGCC--TTACAAGAGC- 145
.|||||.|||||.||.|||||.|||||.|| |||| ||..||||||
BL00810___yqj 99 GGATGCCGGGCCCAACACAAAGGAGGCGGC---AGCCGTTTTGAAGAGCG 145
BSNT_03537___ 146 AGCTTGCCGCTGTAAATGTGAAATTGTCA------GATATCGAGCAGGTT 189
||||.|||| ||..|.| |.||||| ||||||||.|||||.
BL00810___yqj 146 AGCTGGCCG----AACAGGG--ACTGTCATTAAGCGATATCGACCAGGTC 189
BSNT_03537___ 190 GTACTGACTCACCATCATGCTGATCATGCAGGCTTGCT---TGATGTCTT 236
||.|||||.||||||||.||||||||.||.||..|||| .||..||..
BL00810___yqj 190 GTCCTGACCCACCATCACGCTGATCACGCCGGACTGCTGAACGAATTCCC 239
BSNT_03537___ 237 TTCAGATGAAATCGAAGTGATTGGGCATGCATTCAACGAACCTTATATCA 286
..||||.|.|| ||.|.|||||.|||.|.|||||.|||||.|||||||
BL00810___yqj 240 GGCAGAGGTAA---AAATCATTGGCCATCCGTTCAATGAACCGTATATCA 286
BSNT_03537___ 287 GCCGAAATCAAGCCTTTATGGATTGGCAAAAAC----GT--TTTTTTCAA 330
|.|.|||||..|..|||||.| |||||| || ||||||..|
BL00810___yqj 287 GTCAAAATCCCGATTTTATTG------AAAAACAAAAGTCCTTTTTTACA 330
BSNT_03537___ 331 AAGCTGCTGCCTGAATTAGGCGTTCCATTTGATACGGGGAAGGCG----- 375
.|.|||.|.|....|||.||||||||....|||| .||||.||
BL00810___yqj 331 TACCTGTTTCAACGATTCGGCGTTCCCGGCGATA---TGAAGCCGCCAGG 377
BSNT_03537___ 376 --------GAAAAGCTGATGCGATCAG-CGTACGCATTTTCCTGTA---C 413
.|||||| | |||||...|.|||.|||| .
BL00810___yqj 378 CCATACCATAAAAGC-----------GTCGTACCGGTATTCATGTAATCG 416
BSNT_03537___ 414 GAGATCTCTGACAAAATCAATCAGAGAAGGTATGGGC--ATAGATGGGCT 461
||.|| |||||.|..|..|...|||||| ||||| ||.||.|||||
BL00810___yqj 417 GACAT---TGACAGAGACCGTTTCAGAAGG--TGGGCAAATTGAAGGGCT 461
BSNT_03537___ 462 TGAGGGCTGGTCTGTGTTGGAGATGCCTGGACATGCTGAATCGCATATCG 511
|||.||.|||...||..|.||||.|||.||||||||.|..||||||||.|
BL00810___yqj 462 TGACGGGTGGCGGGTTCTTGAGACGCCCGGACATGCCGCTTCGCATATTG 511
BSNT_03537___ 512 TTCTGTTCCATGAAAAAAGCGGAAGGATGCTTGGCGGCGATCTACTGCTG 561
|.||.|...|||||.||...|||||.|||||.||.||.||..|.|||||
BL00810___yqj 512 TCCTTTATAATGAAGAACTTGGAAGCATGCTCGGGGGAGACTTGCTGCT- 560
BSNT_03537___ 562 GCCAACAGCTCGTCT------AATCCGATTTTGGAAGCGCCG----AAAG 601
|.||| ||||| ||||||.||.||||||.|||| ||.|
BL00810___yqj 561 ----AAAGC-CGTCTTCTTCAAATCCGCTTCTGGAAGTGCCGCAAAAAGG 605
BSNT_03537___ 602 CGGGAGACGTCAGGTCAAAGCCTTTAGTGGATTATCAGCGGTCATTGCGA 651
.||||.|||.| |.|..||..|..|||||||.|.|...||..|..|.
BL00810___yqj 606 AGGGAAACGCC----CGACTCCGCTGCTGGATTACCTGGAATCTCTCGGC 651
BSNT_03537___ 652 AGGCTG--------TC----TCAACTTGATCCAACAATCGTATT-TCCTG 688
|||||| || || ||.|||| || |||.|
BL00810___yqj 652 AGGCTGCAGGAGCTTCCGCTTC-ACATGAT------------TTATCCCG 688
BSNT_03537___ 689 GTCACGGCGAGCCTATCACCAGTGTACAAGCGCTGATTGAG--------- 729
|.||.||.|||...||||| |.||| |||.||||
BL00810___yqj 689 GCCATGGGGAGGAAATCAC------AAAAG---TGAATGAGCTTGTCGCC 729
BSNT_03537___ 730 AAGCGTTTTGACAAGCAGAGGAACAGGACGGAGGATGTGCGTCGCATGCT 779
||..|..|.||.||||||.|.|||||..|.||.||.|||...|||||.||
BL00810___yqj 730 AAAAGGCTGGAAAAGCAGCGAAACAGAGCCGAAGAGGTGTACCGCATCCT 779
BSNT_03537___ 780 GGATGAAAAGCCG--ATGACCGCTTTTCAGGTCTGTCAGCAGCTTTTTCC 827
...||||||.||| .|.|| |||.||||.|.||||...|.||.||.||
BL00810___yqj 780 CTCTGAAAAACCGCATTCAC--CTTATCAGATATGTCGAAAACTGTTCCC 827
BSNT_03537___ 828 TGCTGTATATGAAAAGGAATTGTTTTTAACGATGTCAGAAACGGCAGGTC 877
|||.||.||||||||.||..||||.|||||..|||||||||||...||.|
BL00810___yqj 828 TGCAGTCTATGAAAAAGAGCTGTTCTTAACACTGTCAGAAACGATTGGGC 877
BSNT_03537___ 878 ACCTTGATG-TGTTGGAGGCTGAAGAAGCCATCACGTCATATTGGGAAGG 926
|.|||||.| | ||| |||.|| || |||.|||
BL00810___yqj 878 AGCTTGACGAT--------CTG--GAATCC-------CA----GGGGAGG 906
BSNT_03537___ 927 A----------------------AATACCGCATACTTTAAAACAATGAAG 954
| ||| ||..||||.|.|..|||.|.||
BL00810___yqj 907 ATCGGAGTTGATGCGGCCGATGGAAT--CGATTACTATTATGCAAAGTAG 954
BSNT_03537___ 955 AGGTGA 960
BL00810___yqj 954 ------ 954
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