Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03536 and BL00809

See Amino acid alignment / Visit BSNT_03536 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_03536___yqjQ.1.5803.seq
#    -bsequence dna-align/BL00809___yqjQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03536___yqjQ-BL00809___yqjQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03536___yqjQ-BL00809___yqjQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03536___yqjQ
# 2: BL00809___yqjQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 845
# Identity:     546/845 (64.6%)
# Similarity:   546/845 (64.6%)
# Gaps:         127/845 (15.0%)
# Score: 1661.5
# 
#
#=======================================

BSNT_03536___      1 ------------GTGAAACATATAGCGGGAAAAAG-GATTTGGATAACCG     37
                                 .||||      ||| |.|.|||| |||   |||.||.|
BL00809___yqj      1 ATGGAGCAGAAGTTGAA------AGC-GCACAAAGTGAT---GATTACAG     40

BSNT_03536___     38 GCGCTTCAGGAGGGCTTGGTGAAAGAATCGCATACTTATGC-GCGGCTGA     86
                     |.|||||||||||||||||.|||.|.|||||||| |.|||| ||.|..||
BL00809___yqj     41 GAGCTTCAGGAGGGCTTGGCGAACGGATCGCATA-TCATGCTGCAGGGGA     89

BSNT_03536___     87 AGGAGCCCATGTCCTGCTGTCGGC--------TAGA-CGCGAGGATCGTT    127
                     ||||||..|..||.|.|||.|.||        .||| |||...|||..||
BL00809___yqj     90 AGGAGCGGAGATCATTCTGGCTGCGCGCAGAAGAGACCGCCTCGATGCTT    139

BSNT_03536___    128 TGATAGAAATCAAAA------GGAAAATAACCGAGGAATGGAGCGGACAG    171
                     ||     ||.|||||      |||.|| |||||         |||.|.||
BL00809___yqj    140 TG-----AAGCAAAACATCGCGGATAA-AACCG---------GCGCAAAG    174

BSNT_03536___    172 TGTGAGATTTTTCC------TC----TGGATGTCGGCCGCCTAGA-GGAT    210
                     ||          ||      ||    ||||.|||.||||    || ||||
BL00809___yqj    175 TG----------CCGTATAATCGTATTGGACGTCAGCCG----GACGGAT    210

BSNT_03536___    211 ATTGCCCGG--GT-----CCGCG----ATCAGATCGGCTCGGTTGATGTA    249
                             |  ||     |.|||    |..||..|||..||||||||.|.
BL00809___yqj    211 --------GAAGTTGAAGCGGCGTTTCAAGAGGCCGGTCCGGTTGATATT    252

BSNT_03536___    250 CTGATTAACAATGCGGGCTTCGGTATATTTGAAA---CGGTTTTAGACTC    296
                     ||..|.||.||||||||.|||||.||.|||||||   ||.||   |||.|
BL00809___yqj    253 CTTGTCAATAATGCGGGGTTCGGCATTTTTGAAAGCGCGCTT---GACGC    299

BSNT_03536___    297 TACATTGGATGACATGAAAGCGATGTTTGATGTGAATGTCTTCGGCCTGA    346
                     |.|..|.||.||.|||||||||||||||||.||.||.||.|||||.||||
BL00809___yqj    300 TTCCCTTGAAGATATGAAAGCGATGTTTGAGGTCAACGTATTCGGTCTGA    349

BSNT_03536___    347 TCGCCTGTACAAAAGCGGTGCTTCCGCAAATGCTTGAGCAAAAAAAGGGA    396
                     |||||||.||.|||..||..||.|||||.|||.|...||||.|.||.||.
BL00809___yqj    350 TCGCCTGCACGAAAATGGCACTCCCGCATATGATCAGGCAAGACAAAGGC    399

BSNT_03536___    397 CATATCATCAATATCGCCTCTCAAGCGGGGAAAATCGCAACACCGAAGTC    446
                     |||||.|||||||||||.||.||||||||.|||||.||.||.||.|||||
BL00809___yqj    400 CATATTATCAATATCGCTTCACAAGCGGGCAAAATAGCGACGCCCAAGTC    449

BSNT_03536___    447 TAGCCTGTATTCCGCTACCAAACATGCCGTGTTAGGTTACTCAAAC-GCT    495
                     .|||||.|||.|.||.||.||.|||||.|||.|.||.||.|||||| || 
BL00809___yqj    450 AAGCCTTTATGCGGCAACAAAGCATGCGGTGCTCGGATATTCAAACAGC-    498

BSNT_03536___    496 TTGCGGATGGAGCTTTCGGGAACCGGCATTTATGTGACAACAGTCAACCC    545
                     |||.|.|||||||||.|.|.|||.||..|..|.||||||||.|||||.||
BL00809___yqj    499 TTGAGAATGGAGCTTGCAGAAACAGGGGTCAACGTGACAACGGTCAATCC    548

BSNT_03536___    546 GGGACCGATTCAGACGGACTTTTTTTCCATTGCTGATAAAGGCGGGGACT    595
                     .|||||||||||.||.||||||||....|..||.||||||...||.||.|
BL00809___yqj    549 TGGACCGATTCAAACAGACTTTTTCAAGACGGCAGATAAAAAAGGCGATT    598

BSNT_03536___    596 ACGCCAAAAATGTCGGCCGCTGGATGCTTGATCCTGATGACGTAGC--AG    643
                     |.|..||||..|||||..|.||||||||.|||||.|||...||.||  ||
BL00809___yqj    599 ATGTAAAAAGCGTCGGGAGATGGATGCTAGATCCGGATCGGGTTGCTAAG    648

BSNT_03536___    644 CTCAAATTACAGCT--GCAATTTTTACGAAAAAGCGGGAGATCAATCTTC    691
                        |||.| |..||  |||||..|.|||||.|||||.||.||||||||||
BL00809___yqj    649 ---AAAAT-CGTCTCGGCAATGATGACGAACAAGCGCGAAATCAATCTTC    694

BSNT_03536___    692 CGCGTTTAATGAATGCCGGCACTAAGCTGTATCAGCTGTTTCCAGCTCTT    741
                     |..|.|..|||||...||.||..||.||.||.|||||.||.||..|.||.
BL00809___yqj    695 CAGGCTGGATGAACAGCGTCAGCAAACTCTACCAGCTTTTCCCTTCGCTG    744

BSNT_03536___    742 GTAGAA--AAGCTGGCAG---GACGCGCGTTC-ATGAAAAAATAA    780
                     ||.|||  ||     |||   ||.||||.||| || |||||||||
BL00809___yqj    745 GTTGAACGAA-----CAGGTCGAAGCGCTTTCTAT-AAAAAATAA    783


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03536 and BL00809

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
