Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03533 and BL00803

See Amino acid alignment / Visit BSNT_03533 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_03533___coaA.1.5803.seq
#    -bsequence dna-align/BL00803___coaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03533___coaA-BL00803___coaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03533___coaA-BL00803___coaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03533___coaA
# 2: BL00803___coaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 984
# Identity:     711/984 (72.3%)
# Similarity:   711/984 (72.3%)
# Gaps:          48/984 ( 4.9%)
# Score: 2470.0
# 
#
#=======================================

BSNT_03533___      1 GTGAAAAATAAAGAACTTAACCTACATACTTTATATACACAG-CACAATC     49
                     |||...|||.|.||..|.||..|.||.||.|||||||| .|| ||.|..|
BL00803___coa      1 GTGGCGAATCAGGATTTGAATTTGCACACGTTATATAC-GAGTCATACCC     49

BSNT_03533___     50 GGGCGTCTTG--GTCTGG-----TTTTGGGGGGCATTTGTCGATTGCTGT     92
                     |       ||  |.||||     |.|.||.||||||.|||||      ||
BL00803___coa     50 G-------TGATGCCTGGGCAAATCTCGGCGGGCATATGTCG------GT     86

BSNT_03533___     93 A------TCTGAAGAAGAGGCAA--AAGCTGTGGAAGGATTGAATGATTA    134
                     |      .|.|||||.||.|.||  ||||  |.|||||.||.|||||.||
BL00803___coa     87 AAAGATGACCGAAGAGGAAGTAAAGAAGC--TTGAAGGTTTAAATGACTA    134

BSNT_03533___    135 TCTATCTGTTGAAGAAGTGGAAACGATCTATATTCCGCTTGTTCGCTTGC    184
                     |||.|||.|.||||||||.|||||..|.|||.|||||||.|...|..|||
BL00803___coa    135 TCTGTCTTTGGAAGAAGTCGAAACCGTTTATGTTCCGCTGGCGAGGCTGC    184

BSNT_03533___    185 TTCATTTACA--TGTCAAGTC--TGCGGCTGAACGCAATAAGCATGTCAA    230
                     ||.|||||||  .|.|||.||  |    .||||||.||.|..|..||.||
BL00803___coa    185 TTTATTTACACCGGGCAACTCAAT----ATGAACGGAACACCCGGGTAAA    230

BSNT_03533___    231 TGTTTTTTTGAAGCACCCACATTCAGCCAAAATTCCGTTTATTATCGGCA    280
                     .|.|||||||||.||.||.||..|.|||||.|||||||||||.|||||.|
BL00803___coa    231 CGGTTTTTTGAATCATCCTCACGCGGCCAAGATTCCGTTTATCATCGGGA    280

BSNT_03533___    281 TTGCCGGCAGTGTCGCAGTCGGAAAAAGCACGACGGCGCGGATCTTGCAG    330
                     |||||||.||.|||||.||.|||||||||||||||||.||.|||.|.|||
BL00803___coa    281 TTGCCGGAAGCGTCGCGGTTGGAAAAAGCACGACGGCCCGCATCATTCAG    330

BSNT_03533___    331 AAGCTGCTTTCGCGTTTGCCTGACCGTCCAAAAGTGAGCCTTATCACGAC    380
                     |...||||.||.|||||||..||.||.|..|||||.||.||.|||||.||
BL00803___coa    331 ACTGTGCTCTCCCGTTTGCAGGAACGGCTGAAAGTCAGTCTGATCACAAC    380

BSNT_03533___    381 AGATGGTTTTTTATTTCCTACTGCCGAGCTGAAAAAGAAAA--ATATGAT    428
                     .||.||||||.|.|.|||||.|||.|..|||  |.||||||  |.|||||
BL00803___coa    381 CGACGGTTTTCTTTATCCTAATGCGGTTCTG--ACAGAAAAGCAGATGAT    428

BSNT_03533___    429 GTCTAGAAAAGGGTTTCCTGAAAGCTATGATGTAAAGGCGCTGCTCGAAT    478
                     |||.||.|||||||||||.||||||||||||||.||.||||||||.||.|
BL00803___coa    429 GTCGAGGAAAGGGTTTCCCGAAAGCTATGATGTCAAAGCGCTGCTTGAGT    478

BSNT_03533___    479 TTTTGAATGACTTAAAATCAGGAAAGGACAGCGTAAAGGCCCCGGTGTAT    528
                     |||||||.||.|||||||||||||||||.|..||..|.||.||.||.|||
BL00803___coa    479 TTTTGAACGATTTAAAATCAGGAAAGGAAATTGTCCACGCACCCGTTTAT    528

BSNT_03533___    529 TCCCATCTAACCTATGACCGCGAGGAAGGTGTGTTCGAGGTTGTAGAACA    578
                     |||||||||||.||||||.|...||||||.||.|..||....||||||||
BL00803___coa    529 TCCCATCTAACGTATGACAGATTGGAAGGGGTTTATGAAACGGTAGAACA    578

BSNT_03533___    579 GGCGGATATTGTGATTATTGAAGGCATTAATGTGCTTCAGTCGCCCACCT    628
                     .||||||||.|||||.||.||||||.||||||||||.|||.|.||.||..
BL00803___coa    579 AGCGGATATCGTGATCATCGAAGGCGTTAATGTGCTGCAGACACCGACGA    628

BSNT_03533___    629 TGGAGGATGACCGGGAAAACCCGCGTATTTTTGTTTCCGATTTCTTTGAT    678
                     |.||.||.|||||...|||.|||||..||||.|||||||||||.|||||.
BL00803___coa    629 TCGAAGACGACCGTACAAAACCGCGGGTTTTCGTTTCCGATTTTTTTGAC    678

BSNT_03533___    679 TTTTCGATTTATGTGGATGCGGAGGAAAGCCGGATTTTCACTTGGTATTT    728
                     ||.|||||||||||||||||.||.|||..||..|||.|||..||||||.|
BL00803___coa    679 TTCTCGATTTATGTGGATGCCGAAGAAGACCTCATTATCAAATGGTATCT    728

BSNT_03533___    729 AGAGCGTTTTCGCCTGCTTCGGGAAACTGCTTTTCAAAATCCTGA-TTCA    777
                     .||.||.||||||.||||..||||.||.|||||||||.|||| || |||.
BL00803___coa    729 TGAACGCTTTCGCATGCTCAGGGAGACGGCTTTTCAAGATCC-GAGTTCT    777

BSNT_03533___    778 TATTTTCATAAATTTAAAGACTTGTCCGATCAGGAGGCTGACGAGATGGC    827
                     |||||.||||||||.||||||.|..|.||..|.||.||.|||.|.|||||
BL00803___coa    778 TATTTCCATAAATTCAAAGACCTCGCGGACGAAGAAGCGGACCATATGGC    827

BSNT_03533___    828 AGCCTCGATTTGGGAGAGTGTCAACCGGCCGAATTTATATGAAAATATTT    877
                     |...||.||.|||||||..||||||||.||||||||.|||||.||.|||.
BL00803___coa    828 AAAGTCAATATGGGAGACCGTCAACCGTCCGAATTTGTATGAGAACATTC    877

BSNT_03533___    878 TGCCGACTAAATTCAGGTCAGATCTCATTTTGCGTAAGGGAGACGGGCAT    927
                     ||||.||.||||||.||||.|||.|.||.|||.|.||.||.||.||.||.
BL00803___coa    878 TGCCTACAAAATTCCGGTCTGATTTAATCTTGAGAAAAGGCGAAGGCCAC    927

BSNT_03533___    928 AAGGTCGAGGAAGTGCTGGTAAGGAGGGTATGA-    960
                     |||||.||.||..|..||||.||..|||||| | 
BL00803___coa    928 AAGGTGGAAGAGATTTTGGTCAGACGGGTAT-AG    960


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03533 and BL00803

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
