Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03527 and BL00801
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:31
# Commandline: needle
# -asequence dna-align/BSNT_03527___yqjW.1.5803.seq
# -bsequence dna-align/BL00801___uvrX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03527___yqjW-BL00801___uvrX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03527___yqjW-BL00801___uvrX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03527___yqjW
# 2: BL00801___uvrX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1550
# Identity: 750/1550 (48.4%)
# Similarity: 750/1550 (48.4%)
# Gaps: 601/1550 (38.8%)
# Score: 1471.0
#
#
#=======================================
BSNT_03527___ 1 ----ATGAAAGAAAAAGT-----------GATTTTTCTCGTTGACATGCA 35
||.|.||..||..| |.||||...||||||.|||
BL00801___uvr 1 ATGGATTACAGTCAATATCCGTCGCGTTCGGTTTTGTGCGTTGATATG-- 48
BSNT_03527___ 36 ATCG----TTTTATGCATCTGTAGAGAAAGCGG----AAAATCC------ 71
|| |||||||| ||||.| ..|.|||
BL00801___uvr 49 --CGGAGCTTTTATGC-----------AAGCTGCGCCGCAGTCCTGCTCG 85
BSNT_03527___ 72 -ACATTTGAAAAATAGGCCCG-TCA-TTGTTT-----CGGGTGACCCTGA 113
|| |||| |||| |.| |||.|| |||.|| .|.||
BL00801___uvr 86 GAC--TTGA--------CCCGATGACTTGCTTCTTGGCGGTTG--TCGGA 123
BSNT_03527___ 114 AAAAAGGGGCGG------AG--TGGTATTGGCTGC--CTGCCCGCT---- 149
||.|.||.|||| || |.||..|.||||| || ||.|||
BL00801___uvr 124 AACACGGAGCGGCAGGGAAGCATCGTTCTCGCTGCTTCT-CCGGCTCTGA 172
BSNT_03527___ 150 -----------GGCG---AAAC---AAAAAGGTGTGGTGAATGCTTCA-C 181
|||| |||| ||.||| ||||.| |
BL00801___uvr 173 AAAGAGAGTTCGGCGTTCAAACGGGAACAAG-----------GCTTTATC 211
BSNT_03527___ 182 GGCTGTGGGA-----GGCGCA-------GGAAAAGTGTCC-----TGAGG 214
.||||..||| .||||| ||..|| ||| ||.||
BL00801___uvr 212 AGCTGCCGGATGATCCGCGCATCAAGCTGGTCAA---TCCGAAGATGGGG 258
BSNT_03527___ 215 CTGTTGTGCTCCGGCCGCGTATGCAGCGGTATATTGATGTATCACTGCAA 264
||||| || |||| |||.| ||.||.
BL00801___uvr 259 CTGTT-TG-TCCG------------------------TGTTT--CTACAG 280
BSNT_03527___ 265 A--TTA--CGGCCATTCT--CGAGGAGTATACAGACCT-TGTGGAGCCTT 307
| |.| ||||..|||| || || ||||..||||.
BL00801___uvr 281 AGCTCACCCGGCTGTTCTGCCG--------------CTATGTGCCGCCTG 316
BSNT_03527___ 308 ATTCCATCGAT--GAACAGTTCATGGA------CATTA--CAGGCAGCCA 347
||.||||..|| |.|||| |.|||| |.||| ||||..|.|.
BL00801___uvr 317 ATGCCATTCATACGTACAG--CGTGGATGAAAGCTTTATTCAGGTGGACG 364
BSNT_03527___ 348 G------AAGC-TGTTTGG-GACGC-----CGATGGAGATCGCGAAAAGC 384
| |||| |||..|| ||||| ||||.|.||| ||||
BL00801___uvr 365 GTGTTGAAAGCATGTGGGGAGACGCCCGAACGATTGCGAT---GAAA--- 408
BSNT_03527___ 385 ATTCAGGGCAGA--ATCATG---CGGGAGATCGGCGTT---TATGCGCGG 426
||||| ||| || ||| .|||||.|.|||.|| |.||| .
BL00801___uvr 409 ATTCA----AGATGAT-ATGGAAAGGGAGTTTGGCCTTCCCTGTGC---T 450
BSNT_03527___ 427 GTCGGAATCGGCCCTAA-----------CAAAGCGCTGGCCAAAATTGCG 465
|||||||||||.||.|| |||| |||| |||.
BL00801___uvr 451 GTCGGAATCGGACCGAATCTGCTGATGGCAAA--GCTG--------TGCC 490
BSNT_03527___ 466 TGTGAC----AATTTTGCCAAAAAGAATAA--AAACGGTAT-----TTT- 503
| |||| || ||.|||| |||.| |..|||..| |||
BL00801___uvr 491 T-TGACCTTGAA----GCGAAAA--AATCAGCAGGCGGGGTGGCCGTTTG 533
BSNT_03527___ 504 ----TACCTTAACGAAAGAAAATATGAAAACCGAA-ATGTGGCCGCT--- 545
||| |||.|..|||||| |||| .||||||||||
BL00801___uvr 534 GGGCTAC----------GAAGACGTGAAAA-CGAAGCTGTGGCCGCTGTC 572
BSNT_03527___ 546 CCCGGTGGGCAGCATGTTTGGCGTCGG---GAGCCGC-----ATGAAGCA 587
.|||.||.||.||||||..||..|||| .|| || |.||.|
BL00801___uvr 573 TCCGCTGCGCCGCATGTGGGGAATCGGCTCCAG--GCTGGAAAAGACG-- 618
BSNT_03527___ 588 TCATTTAAATCGAATGGGCAT-----CAGCACGATCGGCGGGCTCGCGGC 632
|||||.||.|||||.|| ||| |||||..|||.|||
BL00801___uvr 619 ----TTAAACCGGATGGGGATTTTTACAG-----TCGGCCAGCTGGCG-- 657
BSNT_03527___ 633 TTTTCCGCT-CGATCT--------TTTAAAAAAGAAATGGGGCATTAACG 673
|.|| .||||| ||.|.|||| ||||
BL00801___uvr 658 -----CACTATGATCTCAGTCGGCTTGAGAAAA---------CATT---- 689
BSNT_03527___ 674 GCCACGTGCTGTGGATGACGGCAAAC---------------------GGA 702
|| ||.|||.||.|||| ||.
BL00801___uvr 690 ----CG------GGGTGATGGGAAACCAGCTCTATTATCACGCTTGGGGC 729
BSNT_03527___ 703 ATCGACTATTCCCCTGTGTCAAC--TT-------CGTCTC-TGGACGGGC 742
||||| |.|.|||.| || || ||| ||||.||||
BL00801___uvr 730 ATCGA---------TCTTTCAGCGATTGGAGCGCCG-CTCATGGAGGGGC 769
BSNT_03527___ 743 AAAAGGCGATAGGCCATGGAA------TGACTCTCC--CGAGAGACTACG 784
| |.|..||.|||||| .||.|||.| ||.||...|.||
BL00801___uvr 770 A------GGTCAGCTATGGAAAAAGCCAGATTCTGCTTCGCGATTATCCG 813
BSNT_03527___ 785 AACACTTTGACAAAGAAATCAAG---GTCGTATTGCTTGAGCTGAGTGAA 831
|| |....|.|||.||||| ||| ||| |||||..||.||||.
BL00801___uvr 814 AA-----TCCGGAGGAAGTCAAGCATGTC--ATT-CTTGAAATGTGTGAG 855
BSNT_03527___ 832 GAGGTGTGCAGGCGAAGCCGAAA--------------CGCCGGGGTCATG 867
||.||| |||.||| ||||.|| .|
BL00801___uvr 856 GAAGTG----------GCCAAAAGGGCGCGCGCCCACCGCCAGG----CG 891
BSNT_03527___ 868 GGGCAGA----CAGTGTCAG------------------TGAGC-TGCCGG 894
||.|.|| ||||.||.| ||||| ||.||
BL00801___uvr 892 GGCCGGACCGTCAGTCTCGGCATCGAATACAGCCGCGATGAGCTTGGCG- 940
BSNT_03527___ 895 GGTGCTGATTTTGATTGGCCGACGGGCTTCAACCGGCAAGTGAAGC--TG 942
||.|||||| ||.| ||||| ||.| ||
BL00801___uvr 941 ---GCGGATTTT---------ACCG--TTCAA----------AAACAATG 966
BSNT_03527___ 943 GCAGAGCCGACT---AAT-TCTACGCAGGATGTATA-----------TGA 977
| |.|||| || ||| || ||||..|||.|.|| ||.
BL00801___uvr 967 G-AAAGCC--CTTCAAATGTC-ACGCTTGATCTTTACCATACATGTCTGG 1012
BSNT_03527___ 978 GGCTGTACG-CCGGCTGTTTCTTACATTTTGGGACGGGAAACCTGTCCG- 1025
..||||.|| .||| ||||..|.|||.|||.|.||.||
BL00801___uvr 1013 CACTGTTCGAGCGG------------TTTTATGCCGGCAAAACGGTTCGG 1050
BSNT_03527___ 1026 -------CCGTCTCGGTGT-CAATCTGTCTCAGCTCTCATCTGATGAC-- 1065
|||||||..||| ||||.| ||| .||||||
BL00801___uvr 1051 AAAATTTCCGTCTCTTTGTCCAATAT----------TCA--AGATGACAC 1088
BSNT_03527___ 1066 --ATATGGCAGCTCAATTTATTTCAG----GATTATGCAAAGAAAATGAG 1109
|||| ||||||..||.|.|||| | |||.|.|.||||| ||
BL00801___uvr 1089 CAATAT-GCAGCTTGATCTTTTTC-GCCCCGATCAGGAAAAGA-----AG 1131
BSNT_03527___ 1110 C-----CTAGGCTATGTGATGGACGGCATTAAAAATCGATTCGGCGACAC 1154
| ||.||.|||||||||||||||||.|.|.|.||.|.||||...||
BL00801___uvr 1132 CGGCAGCTCGGGTATGTGATGGACGGCATCAGAGAACGGTACGGCTCAAC 1181
BSNT_03527___ 1155 AGCAATCATCAGGGCGGCGT------CACTGACAGCGGCA-GGCCAGGCA 1197
|||..|..|..|||| ||| |||..||..|||.| ||||.|.|
BL00801___uvr 1182 AGCGCTTTTGCGGGC--CGTTTCCTACACAAACGCCGGGACGGCCCGTC- 1228
BSNT_03527___ 1198 TTTGAACGCGCGGCTAAAATAGG-----GG------GGCACTATAAATGA 1236
.||||..|||||.|| || |||| ||.
BL00801___uvr 1229 --------TGCGGTCAAAATTGGTCGGAGGCCATCAGGCA-TAG------ 1263
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