Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03527 and BL00801

See Amino acid alignment / Visit BSNT_03527 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:31
# Commandline: needle
#    -asequence dna-align/BSNT_03527___yqjW.1.5803.seq
#    -bsequence dna-align/BL00801___uvrX.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03527___yqjW-BL00801___uvrX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03527___yqjW-BL00801___uvrX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03527___yqjW
# 2: BL00801___uvrX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1550
# Identity:     750/1550 (48.4%)
# Similarity:   750/1550 (48.4%)
# Gaps:         601/1550 (38.8%)
# Score: 1471.0
# 
#
#=======================================

BSNT_03527___      1 ----ATGAAAGAAAAAGT-----------GATTTTTCTCGTTGACATGCA     35
                         ||.|.||..||..|           |.||||...||||||.|||  
BL00801___uvr      1 ATGGATTACAGTCAATATCCGTCGCGTTCGGTTTTGTGCGTTGATATG--     48

BSNT_03527___     36 ATCG----TTTTATGCATCTGTAGAGAAAGCGG----AAAATCC------     71
                       ||    ||||||||           ||||.|    ..|.|||      
BL00801___uvr     49 --CGGAGCTTTTATGC-----------AAGCTGCGCCGCAGTCCTGCTCG     85

BSNT_03527___     72 -ACATTTGAAAAATAGGCCCG-TCA-TTGTTT-----CGGGTGACCCTGA    113
                      ||  ||||        |||| |.| |||.||     |||.||  .|.||
BL00801___uvr     86 GAC--TTGA--------CCCGATGACTTGCTTCTTGGCGGTTG--TCGGA    123

BSNT_03527___    114 AAAAAGGGGCGG------AG--TGGTATTGGCTGC--CTGCCCGCT----    149
                     ||.|.||.||||      ||  |.||..|.|||||  || ||.|||    
BL00801___uvr    124 AACACGGAGCGGCAGGGAAGCATCGTTCTCGCTGCTTCT-CCGGCTCTGA    172

BSNT_03527___    150 -----------GGCG---AAAC---AAAAAGGTGTGGTGAATGCTTCA-C    181
                                ||||   ||||   ||.|||           ||||.| |
BL00801___uvr    173 AAAGAGAGTTCGGCGTTCAAACGGGAACAAG-----------GCTTTATC    211

BSNT_03527___    182 GGCTGTGGGA-----GGCGCA-------GGAAAAGTGTCC-----TGAGG    214
                     .||||..|||     .|||||       ||..||   |||     ||.||
BL00801___uvr    212 AGCTGCCGGATGATCCGCGCATCAAGCTGGTCAA---TCCGAAGATGGGG    258

BSNT_03527___    215 CTGTTGTGCTCCGGCCGCGTATGCAGCGGTATATTGATGTATCACTGCAA    264
                     ||||| || ||||                        |||.|  ||.||.
BL00801___uvr    259 CTGTT-TG-TCCG------------------------TGTTT--CTACAG    280

BSNT_03527___    265 A--TTA--CGGCCATTCT--CGAGGAGTATACAGACCT-TGTGGAGCCTT    307
                     |  |.|  ||||..||||  ||              || ||||..||||.
BL00801___uvr    281 AGCTCACCCGGCTGTTCTGCCG--------------CTATGTGCCGCCTG    316

BSNT_03527___    308 ATTCCATCGAT--GAACAGTTCATGGA------CATTA--CAGGCAGCCA    347
                     ||.||||..||  |.||||  |.||||      |.|||  ||||..|.|.
BL00801___uvr    317 ATGCCATTCATACGTACAG--CGTGGATGAAAGCTTTATTCAGGTGGACG    364

BSNT_03527___    348 G------AAGC-TGTTTGG-GACGC-----CGATGGAGATCGCGAAAAGC    384
                     |      |||| |||..|| |||||     ||||.|.|||   ||||   
BL00801___uvr    365 GTGTTGAAAGCATGTGGGGAGACGCCCGAACGATTGCGAT---GAAA---    408

BSNT_03527___    385 ATTCAGGGCAGA--ATCATG---CGGGAGATCGGCGTT---TATGCGCGG    426
                     |||||    |||  || |||   .|||||.|.|||.||   |.|||   .
BL00801___uvr    409 ATTCA----AGATGAT-ATGGAAAGGGAGTTTGGCCTTCCCTGTGC---T    450

BSNT_03527___    427 GTCGGAATCGGCCCTAA-----------CAAAGCGCTGGCCAAAATTGCG    465
                     |||||||||||.||.||           ||||  ||||        |||.
BL00801___uvr    451 GTCGGAATCGGACCGAATCTGCTGATGGCAAA--GCTG--------TGCC    490

BSNT_03527___    466 TGTGAC----AATTTTGCCAAAAAGAATAA--AAACGGTAT-----TTT-    503
                     | ||||    ||    ||.||||  |||.|  |..|||..|     ||| 
BL00801___uvr    491 T-TGACCTTGAA----GCGAAAA--AATCAGCAGGCGGGGTGGCCGTTTG    533

BSNT_03527___    504 ----TACCTTAACGAAAGAAAATATGAAAACCGAA-ATGTGGCCGCT---    545
                         |||          |||.|..|||||| |||| .||||||||||   
BL00801___uvr    534 GGGCTAC----------GAAGACGTGAAAA-CGAAGCTGTGGCCGCTGTC    572

BSNT_03527___    546 CCCGGTGGGCAGCATGTTTGGCGTCGG---GAGCCGC-----ATGAAGCA    587
                     .|||.||.||.||||||..||..||||   .||  ||     |.||.|  
BL00801___uvr    573 TCCGCTGCGCCGCATGTGGGGAATCGGCTCCAG--GCTGGAAAAGACG--    618

BSNT_03527___    588 TCATTTAAATCGAATGGGCAT-----CAGCACGATCGGCGGGCTCGCGGC    632
                         |||||.||.|||||.||     |||     |||||..|||.|||  
BL00801___uvr    619 ----TTAAACCGGATGGGGATTTTTACAG-----TCGGCCAGCTGGCG--    657

BSNT_03527___    633 TTTTCCGCT-CGATCT--------TTTAAAAAAGAAATGGGGCATTAACG    673
                          |.|| .|||||        ||.|.||||         ||||    
BL00801___uvr    658 -----CACTATGATCTCAGTCGGCTTGAGAAAA---------CATT----    689

BSNT_03527___    674 GCCACGTGCTGTGGATGACGGCAAAC---------------------GGA    702
                         ||      ||.|||.||.||||                     ||.
BL00801___uvr    690 ----CG------GGGTGATGGGAAACCAGCTCTATTATCACGCTTGGGGC    729

BSNT_03527___    703 ATCGACTATTCCCCTGTGTCAAC--TT-------CGTCTC-TGGACGGGC    742
                     |||||         |.|.|||.|  ||       || ||| ||||.||||
BL00801___uvr    730 ATCGA---------TCTTTCAGCGATTGGAGCGCCG-CTCATGGAGGGGC    769

BSNT_03527___    743 AAAAGGCGATAGGCCATGGAA------TGACTCTCC--CGAGAGACTACG    784
                     |      |.|..||.||||||      .||.|||.|  ||.||...|.||
BL00801___uvr    770 A------GGTCAGCTATGGAAAAAGCCAGATTCTGCTTCGCGATTATCCG    813

BSNT_03527___    785 AACACTTTGACAAAGAAATCAAG---GTCGTATTGCTTGAGCTGAGTGAA    831
                     ||     |....|.|||.|||||   |||  ||| |||||..||.||||.
BL00801___uvr    814 AA-----TCCGGAGGAAGTCAAGCATGTC--ATT-CTTGAAATGTGTGAG    855

BSNT_03527___    832 GAGGTGTGCAGGCGAAGCCGAAA--------------CGCCGGGGTCATG    867
                     ||.|||          |||.|||              ||||.||    .|
BL00801___uvr    856 GAAGTG----------GCCAAAAGGGCGCGCGCCCACCGCCAGG----CG    891

BSNT_03527___    868 GGGCAGA----CAGTGTCAG------------------TGAGC-TGCCGG    894
                     ||.|.||    ||||.||.|                  ||||| ||.|| 
BL00801___uvr    892 GGCCGGACCGTCAGTCTCGGCATCGAATACAGCCGCGATGAGCTTGGCG-    940

BSNT_03527___    895 GGTGCTGATTTTGATTGGCCGACGGGCTTCAACCGGCAAGTGAAGC--TG    942
                        ||.||||||         ||.|  |||||          ||.|  ||
BL00801___uvr    941 ---GCGGATTTT---------ACCG--TTCAA----------AAACAATG    966

BSNT_03527___    943 GCAGAGCCGACT---AAT-TCTACGCAGGATGTATA-----------TGA    977
                     | |.||||  ||   ||| || ||||..|||.|.||           ||.
BL00801___uvr    967 G-AAAGCC--CTTCAAATGTC-ACGCTTGATCTTTACCATACATGTCTGG   1012

BSNT_03527___    978 GGCTGTACG-CCGGCTGTTTCTTACATTTTGGGACGGGAAACCTGTCCG-   1025
                     ..||||.|| .|||            ||||..|.|||.|||.|.||.|| 
BL00801___uvr   1013 CACTGTTCGAGCGG------------TTTTATGCCGGCAAAACGGTTCGG   1050

BSNT_03527___   1026 -------CCGTCTCGGTGT-CAATCTGTCTCAGCTCTCATCTGATGAC--   1065
                            |||||||..||| ||||.|          |||  .||||||  
BL00801___uvr   1051 AAAATTTCCGTCTCTTTGTCCAATAT----------TCA--AGATGACAC   1088

BSNT_03527___   1066 --ATATGGCAGCTCAATTTATTTCAG----GATTATGCAAAGAAAATGAG   1109
                       |||| ||||||..||.|.|||| |    |||.|.|.|||||     ||
BL00801___uvr   1089 CAATAT-GCAGCTTGATCTTTTTC-GCCCCGATCAGGAAAAGA-----AG   1131

BSNT_03527___   1110 C-----CTAGGCTATGTGATGGACGGCATTAAAAATCGATTCGGCGACAC   1154
                     |     ||.||.|||||||||||||||||.|.|.|.||.|.||||...||
BL00801___uvr   1132 CGGCAGCTCGGGTATGTGATGGACGGCATCAGAGAACGGTACGGCTCAAC   1181

BSNT_03527___   1155 AGCAATCATCAGGGCGGCGT------CACTGACAGCGGCA-GGCCAGGCA   1197
                     |||..|..|..||||  |||      |||..||..|||.| ||||.|.| 
BL00801___uvr   1182 AGCGCTTTTGCGGGC--CGTTTCCTACACAAACGCCGGGACGGCCCGTC-   1228

BSNT_03527___   1198 TTTGAACGCGCGGCTAAAATAGG-----GG------GGCACTATAAATGA   1236
                             .||||..|||||.||     ||      |||| ||.      
BL00801___uvr   1229 --------TGCGGTCAAAATTGGTCGGAGGCCATCAGGCA-TAG------   1263


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.