Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03545 and BL00798

See Amino acid alignment / Visit BSNT_03545 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03545___yqjL.1.5803.seq
#    -bsequence dna-align/BL00798___yqjL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03545___yqjL-BL00798___yqjL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03545___yqjL-BL00798___yqjL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03545___yqjL
# 2: BL00798___yqjL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 854
# Identity:     504/854 (59.0%)
# Similarity:   504/854 (59.0%)
# Gaps:         184/854 (21.5%)
# Score: 1415.0
# 
#
#=======================================

BSNT_03545___      1 ATGAAATCAGCTTGGATGGAAAAGACATATACAATTGACGGATGTGC--G     48
                          ||.|.|.| .|.|||||..|.||||||..||||.||  ||||  |
BL00798___yqj      1 -----ATGACCAT-AACGGAAAGAATATATACTGTTGAAGG--GTGCATG     42

BSNT_03545___     49 TTTCATACACAGCACCGGAAAGGATCAA-----GCGGTGTAACGATTGTC     93
                     |||.|||||.||||..|.||||||..||     ||     |||||||.|.
BL00798___yqj     43 TTTTATACAAAGCAGAGAAAAGGAAAAAAGAACGC-----AACGATTATT     87

BSNT_03545___     94 TTTGAGGCCGGCTATGGTACTTCTTCTGAGACGTGGAAACC--ATTAATG    141
                     |||||.||.|||||.|||..||||||...|||.|||.|.||  .||.|| 
BL00798___yqj     88 TTTGAAGCGGGCTACGGTTTTTCTTCAACGACTTGGCAGCCCATTTTAT-    136

BSNT_03545___    142 GCGGACATTGATGATGAATTTGGCATTTTCACATATGATCGGGCAGGCAT    191
                      |.||.||.||.||.||..|.|||.|.||..||||.||.||.||||||.|
BL00798___yqj    137 -CCGATATAGACGAAGATCTCGGCTTGTTTGCATACGACCGTGCAGGCCT    185

BSNT_03545___    192 AGGAAAAAGCGGGCAAAGCA-GAGCTAAACGAACAGCTGATCAACAAGTG    240
                     .||.||||||||||..|||| .||| |||||||||||.|||||....|||
BL00798___yqj    186 TGGCAAAAGCGGGCCGAGCACCAGC-AAACGAACAGCGGATCAGATGGTG    234

BSNT_03545___    241 AAAGAATTGGAGAG-TTTGCTTAAAGCAGCTGATGTAAAACCTCCTTATT    289
                     ||||||.| .|.|| ..|||||..||||||.||.||.|||||.||.||  
BL00798___yqj    235 AAAGAACT-AAAAGCGCTGCTTGCAGCAGCAGACGTCAAACCGCCCTA--    281

BSNT_03545___    290 TGGCTGTTT----CACACTCATACGGAGCTGTCATCAC----CGGTTTAT    331
                       .||||||    |.||.||.|.|||.||.|||||..|    |.|||   
BL00798___yqj    282 --CCTGTTTGTCGCCCATTCGTTCGGCGCCGTCATTGCAAGGCTGTT---    326

BSNT_03545___    332 GGGCCTGCAA----AAACAAGTATGATATTATCGGCATGGTCCTTCTTGA    377
                          |||||    ..|||...||||..|.|||||||||||.||.|||||
BL00798___yqj    327 -----TGCAAGCCGGTACAGCGATGAAGTCATCGGCATGGTGCTGCTTGA    371

BSNT_03545___    378 CCCAGCTTTAGGCGATTGCGCCAGCTTTACCTTTATACCCGAAGAAA---    424
                     .||.||||..|..|||     |||                ||.||||   
BL00798___yqj    372 TCCCGCTTGTGAAGAT-----CAG----------------GAGGAAAAAG    400

BSNT_03545___    425 ---TGC------------ACAGATCACATACGAGAAAGATGAT-------    452
                        |||            |||.||.|        |||||.|||       
BL00798___yqj    401 TGCTGCCGCTACTTCCGGACACATTA--------AAAGAAGATTATGTCA    442

BSNT_03545___    453 ----------GCTTGAGGGCACACATGCAGAGTTTTCAAAAAGTCTGCAG    492
                               |.|.||.||..|.||||..||.|||..|.||||.|||.|.
BL00798___yqj    443 AACAGTTTTCGATCGAAGGGTCCCATGAGGACTTTAAACAAAGCCTGGAC    492

BSNT_03545___    493 GAGCTCAAAAAGCGGCAAGTCCACTTAGGAAACATGCCTC-------TTC    535
                     ..|||   .||||.|.||        |.||||||  ||||       |||
BL00798___yqj    493 ATGCT---GAAGCAGGAA--------AAGAAACA--CCTCGGTTCGGTTC    529

BSNT_03545___    536 TTGTG-TTGTCAT-----CAGGAGAACGGACTGAG----------AAATT    569
                     .|.|| |.|||.|     |.|||.||.||||.|||          ||   
BL00798___yqj    530 CTTTGCTCGTCCTCTCGGCGGGAAAAAGGACGGAGGCGGCGAAGCAA---    576

BSNT_03545___    570 CGCTGCTGAACAGGAGTGGC-AAAACTTGCACAGCAGCATATTGTCTCTA    618
                         |||.|.||.||.|||| .||.||| ||||||||..|..||||||||
BL00798___yqj    577 ----GCTCATCAAGAATGGCTGAAGCTT-CACAGCAGACTGCTGTCTCTA    621

BSNT_03545___    619 TCTAACCAAAGCGGCTGGATTCAAGCTAAAAACAGCTCCCACAACATCCA    668
                     ||..|.|||||||||||||||||.||.|||||||||||.||....|||||
BL00798___yqj    622 TCGCATCAAAGCGGCTGGATTCAGGCGAAAAACAGCTCGCATTTGATCCA    671

BSNT_03545___    669 TCATGATGAACCTCATATCGTTCA-CTTGGCTATTTATGACGTATGGTGC    717
                     |||||||||.||.||.|||||.|| ||| ||.||.|||||.||.||||..
BL00798___yqj    672 TCATGATGAGCCGCACATCGTCCAGCTT-GCGATCTATGATGTGTGGTAT    720

BSNT_03545___    718 GCAGCGTGCCAGCAG---------GCCGCTCCTCTTTACCAGGCAGTCAA    758
                     ||.||   .||||||         |||         ||.||.||.|.|||
BL00798___yqj    721 GCGGC---ACAGCAGCAAACATACGCC---------TATCAAGCCGCCAA    758

BSNT_03545___    759 TTAA    762
                     ||||
BL00798___yqj    759 TTAA    762


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03545 and BL00798

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
