Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03541 and BL00797

See Amino acid alignment / Visit BSNT_03541 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:32
# Commandline: needle
#    -asequence dna-align/BSNT_03541___namA.1.5803.seq
#    -bsequence dna-align/BL00797___yqjM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03541___namA-BL00797___yqjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03541___namA-BL00797___yqjM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03541___namA
# 2: BL00797___yqjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1057
# Identity:     754/1057 (71.3%)
# Similarity:   754/1057 (71.3%)
# Gaps:          77/1057 ( 7.3%)
# Score: 2517.5
# 
#
#=======================================

BSNT_03541___      1 -------ATGGCCAGAAAATTATTTACACCTA------TTACAATTAAAG     37
                            ||    .|||||.||||.||||| |      |||     ||||
BL00797___yqj      1 TTGAGTAAT----CGAAAACTATTCACACC-ATGGAGTTTA-----AAAG     40

BSNT_03541___     38 ATATGACGTTAAAAAACCGCATTGTCATGTCGCCAATGTGCATGTATTCT     87
                     ...|.||..||||||||||.||||||||||||||.||||||||||||||.
BL00797___yqj     41 GAGTTACACTAAAAAACCGGATTGTCATGTCGCCGATGTGCATGTATTCC     90

BSNT_03541___     88 TCTCATGAAAAGGACGGAAAATTAACA-CCGTTCCACATGGCACATTACA    136
                     ||.|||||||||||.||||||.| .|| ||.|||||||||.|.||.||||
BL00797___yqj     91 TCCCATGAAAAGGATGGAAAAGT-GCAGCCTTTCCACATGACCCACTACA    139

BSNT_03541___    137 TATCGCGCGCAATCGGCCAGGTCGGACTGATTATTGTAGAGGCGTCAGCG    186
                     |.||.|||||..||||.||.||||||||.||.||.|||||.||..|.||.
BL00797___yqj    140 TCTCCCGCGCCGTCGGACAAGTCGGACTAATCATGGTAGAAGCTACCGCC    189

BSNT_03541___    187 GTTAACCCTCAAGGACGAATCACTGACCAAGACTTAGGCATTTGGAGCGA    236
                     ||.|..||.||.|||.|||||.|||||||.||..|.|||||.|||...||
BL00797___yqj    190 GTCACTCCGCAGGGAAGAATCTCTGACCAGGATCTGGGCATATGGGATGA    239

BSNT_03541___    237 CGAGCATATTGAAGGCTTTGCAAAACTGACTGAGCAGGTCAAAGAACAAG    286
                     ||.|||||||||.||..||||...|.||||       ||||.|.|.||||
BL00797___yqj    240 CGCGCATATTGACGGACTTGCTGCATTGAC-------GTCACAAATCAAG    282

BSNT_03541___    287 --GT------TCAAAAATCGGC-ATTCAGCTTGCCCATGCCGGACGTAAA    327
                       ||      .|||||  |||| ||||||.|.||.||.||||||.|.|||
BL00797___yqj    283 ACGTACGGCAGCAAAA--CGGCGATTCAGTTGGCGCACGCCGGAAGAAAA    330

BSNT_03541___    328 GCTGAGCTTGAAGG-AGATATCTTCGCTCCATCGGCGATTGCGTTTGACG    376
                     ||.|||.|.||||| |.| ||||.||..||.||.||||||.|.||.||||
BL00797___yqj    331 GCCGAGGTCGAAGGTACA-ATCTACGGACCTTCAGCGATTCCTTTCGACG    379

BSNT_03541___    377 AACAATCAGC-AACACCTGTAGAAATGTCAGCAGAAAAAG----TAAAAG    421
                     || |||..|| |||.|||||.||||||.||    |||.||    ||||||
BL00797___yqj    380 AA-AATTCGCGAACGCCTGTTGAAATGACA----AAAGAGGACATAAAAG    424

BSNT_03541___    422 AAACAGTTCAGGAGTTCAAGCAAGCGGCTGCCCGCGCAAAAGAAGCCGGC    471
                     ||||.|||||||..|||||..|||..||||..|||||.||||..||||||
BL00797___yqj    425 AAACCGTTCAGGCTTTCAAAAAAGGAGCTGAACGCGCGAAAGCCGCCGGC    474

BSNT_03541___    472 TTTGATGTGATTGAAATTCATGCGGCGCACGGATATTTAATTCATGAATT    521
                     |||||..|.||.||.|||||||..||.||||||||.||.||..|.|||||
BL00797___yqj    475 TTTGACATCATCGAGATTCATGGAGCCCACGGATACTTGATCAACGAATT    524

BSNT_03541___    522 TTTGTCTCCGCTTTCCAACCATCGCACAGATGAATACGGCGGCTCACCTG    571
                     |||.||.||||||||||||.|.|||...|||||||||||.||.|||||.|
BL00797___yqj    525 TTTATCACCGCTTTCCAACAAACGCGAGGATGAATACGGAGGTTCACCGG    574

BSNT_03541___    572 AAAACCGCTATC--GTTTCTT-GAGAGAGATCATTGATGAAGTCAAACAA    618
                     |||||||||| |  |.|.||| |.|| || ||||.||.|..||.|||.||
BL00797___yqj    575 AAAACCGCTA-CAGGCTGCTTCGCGA-AG-TCATCGACGCTGTAAAAGAA    621

BSNT_03541___    619 GTATGGGACGGTCCTTTATTTGTCCGTGTATCTGCTTCTGACTACACTGA    668
                     ||.||||.|||.||.|||||.||.||.||.||.|||||.||||||| ..|
BL00797___yqj    622 GTCTGGGCCGGACCATTATTCGTACGCGTTTCAGCTTCAGACTACA-AAA    670

BSNT_03541___    669 C-AAAGGCTTAGACATTGCCGATCACATCGGTTTTGCAAAATGGATGAAG    717
                     | ||||||.|.||..|.||||||.|..|||||||.||.||||||||||||
BL00797___yqj    671 CAAAAGGCCTTGATGTCGCCGATTATGTCGGTTTCGCCAAATGGATGAAG    720

BSNT_03541___    718 GAGCAGGGAGTTGACTTAATTGACTG-CAGCTCAGGCGCCCTTGTTCACG    766
                     ||.|||||.|||||.||.||.|| || ||||||.||.||..||||.|..|
BL00797___yqj    721 GAACAGGGCGTTGATTTGATCGA-TGTCAGCTCCGGTGCTGTTGTGCCTG    769

BSNT_03541___    767 CAGACATTAACGTATTCCCTGGCTATCAGGTCAGCTTCGCTGAGAAAATC    816
                     |.||.||.|||||.|||||.|||||.||.|||.|||||||.||.|.|||.
BL00797___yqj    770 CTGATATCAACGTCTTCCCAGGCTACCAAGTCGGCTTCGCCGATACAATT    819

BSNT_03541___    817 CGTGAACAGGCGGACATGGCTACTGGTGCCGTCGGCATGATTAC-AGACG    865
                     ||.|..||.||.||.||....||.||.||.|||||..||||.|| || .|
BL00797___yqj    820 CGCGCTCAAGCCGAGATTCAGACAGGAGCTGTCGGATTGATCACTAG-TG    868

BSNT_03541___    866 G--TTCAATGGCTGAAGAAATTCTGCAAAACGGACGTGCCGACCTCATCT    913
                     |  |||||  |||||.|||||.||.|||||.|||||.||.||.||||   
BL00797___yqj    869 GCCTTCAA--GCTGAGGAAATCCTCCAAAATGGACGCGCTGATCTCA---    913

BSNT_03541___    914 TTATCG--GCA-GAGAGCTTTTGCGGGATCCATTCTTTGCAAGAACTGCT    960
                     ||.|||  ||| |.|||||..||.|.|||||||.||...|.|.|||.|||
BL00797___yqj    914 TTTTCGTTGCACGGGAGCTGCTGAGAGATCCATACTGGCCGAAAACCGCT    963

BSNT_03541___    961 GCGAAACAGCTCAATACAGAGATTCCGGCCCCTGTTCAATACGAAAGAGG   1010
                     ||.||||||.|.||.|||.|.|||...|..||||||||.|||||.||||.
BL00797___yqj    964 GCCAAACAGTTGAACACAAAAATTGAAGGGCCTGTTCAGTACGACAGAGC   1013

BSNT_03541___   1011 CTGGTAA   1017
                     |||||||
BL00797___yqj   1014 CTGGTAA   1020


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