Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03487 and BL00779
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03487___spoVAA.1.5803.seq
# -bsequence dna-align/BL00779___spoVAA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03487___spoVAA-BL00779___spoVAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03487___spoVAA-BL00779___spoVAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03487___spoVAA
# 2: BL00779___spoVAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 452/653 (69.2%)
# Similarity: 452/653 (69.2%)
# Gaps: 61/653 ( 9.3%)
# Score: 1490.5
#
#
#=======================================
BSNT_03487___ 1 ATGATGGAACGACGAATATTTATCCGGCTTCGCCACCGGGTGCTGGCACA 50
||||||||.|.|.|.||||||.|.||.|||||||||.|...||||.|
BL00779___spo 1 ---ATGGAACGTCAAGTTTTTATCAGACTCCGCCACCGGCTTGAGGCAGA 47
BSNT_03487___ 51 TCCAGGGGAT--ATT-ATTACCGTT----GGAGATGCCGCGCAAATAGAA 93
||| |||| ||| ||| || ||..||..|||.||..|||..
BL00779___spo 48 TCC---GGATGAATTGATT----TTGCTCGGCCATATCGCACAGGTAGCG 90
BSNT_03487___ 94 GGGCAGCTTCAGCTG--AAAAAGAAA--CTT--TCGGCTATGCCGCTTTA 137
||..| |.||.| |.||||||| ||| .|||| ||||..||||
BL00779___spo 91 GGTGA----CCGCGGATACAAAGAAAAGCTTGAACGGC--TGCCTATTTA 134
BSNT_03487___ 138 TCAGGTGAGCGAAAAAGATAAAAATATCGTAATTCTGGATATCATACAAG 187
||||||.|||.||...|||.|||..||.||..|.|||||..|.||..|.|
BL00779___spo 135 TCAGGTCAGCAAAGCGGATCAAAGCATGGTGGTGCTGGACGTGATGAAGG 184
BSNT_03487___ 188 TCCTCAGAGC----CAT---TCATTTACAAGATCC-GACACTTGATGTTC 229
|..|...||| ||| ||.|| ||| ||| ||||||||.|
BL00779___spo 185 TGATTGAAGCTGTACATAAATCGTT-------TCCTGAC-CTTGATGTCC 226
BSNT_03487___ 230 AAACCGTAGGCGGAGCAGAAACCATTGTTGAAATTCAATATCGAAAGCGA 279
|||||||.|||||..|.||||||||.||.||.||.||||||| |||
BL00779___spo 227 AAACCGTCGGCGGTTCTGAAACCATCGTGGAGATCCAATATC-----CGA 271
BSNT_03487___ 280 A-----ATTTATCAACGGTTCTATTTATCGGTGTCTGGCTGCTTCTGTTT 324
| ||.|.||..|.||.||.||.||||..|||||||||||..||||.
BL00779___spo 272 AAAGGGATCTGTCGCCCGTGCTTTTCATCGCCGTCTGGCTGCTCTTGTTC 321
BSNT_03487___ 325 ATTGGATCGTGTCTTGCCATCATGAACTTTCATGAGGATGTAAGCATGAG 374
.|.||..|..|.||||||.||||||||||||||||.|||||.||||||||
BL00779___spo 322 GTCGGTGCCGGCCTTGCCGTCATGAACTTTCATGAAGATGTCAGCATGAG 371
BSNT_03487___ 375 AGATGTTCATATCGCACTATATGAAATCATAACCGGAGAGAGGAATGACT 424
.||.||.||.|||...||.||.|||||..|.||.||..||..|||...||
BL00779___spo 372 GGAAGTGCACATCCTGCTTTACGAAATGGTGACGGGCAAGGTGAACCGCT 421
BSNT_03487___ 425 ATCCATA---TTTGCTTCAAATCCCATACAGCATCGGTTTGGGACTGGGG 471
||||||| |||| ||..|.||.||||||||||||.|.||.||.||.
BL00779___spo 422 ATCCATACCTTTTG---CAGGTTCCGTACAGCATCGGTCTTGGCCTCGGC 468
BSNT_03487___ 472 ATGATCGTGTTTTTTAACCACATATTTAAAAAGCGCCTAAATGAAGAGCC 521
||||||.||||||||||.||..||||||||||.||..|.||.||.|||||
BL00779___spo 469 ATGATCTTGTTTTTTAATCATTTATTTAAAAAACGGTTTAACGAGGAGCC 518
BSNT_03487___ 522 CAGCCCGCTGGAGGTTGAGATGTTTAACTATCAGCTTGATCTCGATCAAT 571
||||||.||||||||.|||||||||||.||||||||||||.|.||.||.|
BL00779___spo 519 CAGCCCCCTGGAGGTCGAGATGTTTAAATATCAGCTTGATTTGGACCATT 568
BSNT_03487___ 572 ATGTGGCCATGCATGAGAATCAAGAAACCATAAAGGATCTGCATGATCGT 621
|||||||||||||.||.||..|||||||.|.|||||||.|.|||||||.|
BL00779___spo 569 ATGTGGCCATGCACGAAAACAAAGAAACGACAAAGGATATTCATGATCAT 618
BSNT_03487___ 622 TAG 624
|||
BL00779___spo 619 TAG 621
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