Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04914 and BL00750

See Amino acid alignment / Visit BSNT_04914 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:05
# Commandline: needle
#    -asequence dna-align/BSNT_04914___cssR.1.5803.seq
#    -bsequence dna-align/BL00750___cssR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04914___cssR-BL00750___cssR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04914___cssR-BL00750___cssR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04914___cssR
# 2: BL00750___cssR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity:     524/690 (75.9%)
# Similarity:   524/690 (75.9%)
# Gaps:          27/690 ( 3.9%)
# Score: 1898.5
# 
#
#=======================================

BSNT_04914___      1 TTGTCATACACCATTTATCTAGTTGAAGATGAGGATAACCTGAATGAACT     50
                     |||||||||.||||||||||||||||||||||.||.||..|.||||||.|
BL00750___css      1 TTGTCATACTCCATTTATCTAGTTGAAGATGAAGAGAATTTAAATGAATT     50

BSNT_04914___     51 GCTGACGAAGTATTTAGAGAATGAGGGCTGGAACATTACATCTTTTACGA    100
                     ||||||.||.||.|||||||.|||.||||||.||.|.||.|||||| |.|
BL00750___css     51 GCTGACAAAATACTTAGAGAGTGAAGGCTGGCACGTCACTTCTTTT-CTA     99

BSNT_04914___    101 AA-GGTGAAGACGCCAG--AAAGAAAATGACACCGTCTCCCCACCTATGG    147
                     || ||||||..||||||  |||.||.|.|.||  |||.||.||..|||||
BL00750___css    100 AACGGTGAAAGCGCCAGGCAAAAAATAGGCCA--GTCACCTCATTTATGG    147

BSNT_04914___    148 ATTCTTGATATCATGCTGCCGGATACCGACGGCTATACATTAATAAAAGA    197
                     |||||.|||||||||.|.||.||||.||||||.|||||..||||||||||
BL00750___css    148 ATTCTCGATATCATGTTACCAGATATCGACGGGTATACGCTAATAAAAGA    197

BSNT_04914___    198 AATCAAGGCGA----AAGATCCTGACGTGCCGGTCATTTTTATTTCCGCC    243
                     |||.||    |    |||||||.||.||.||.||||||||||||||.||.
BL00750___css    198 AATAAA----AAATCAAGATCCGGAAGTCCCCGTCATTTTTATTTCTGCG    243

BSNT_04914___    244 CGAGATGCGGATATTGACAGAGTGCT-TGGCTTAGAGCTTGGCAGCAATG    292
                     ||.|||||.||.|||||||||||||| .||||| ||.||.|||||||..|
BL00750___css    244 CGCGATGCCGACATTGACAGAGTGCTGGGGCTT-GAACTGGGCAGCAGCG    292

BSNT_04914___    293 ACTACATTTCAAAGCCGTTTCTGCCGCGGGAGCTGATTATCCGTGTGCAA    342
                     ||||.||.||.|||||||||||.||..||||||||||.|||||.||||||
BL00750___css    293 ACTATATATCTAAGCCGTTTCTCCCCAGGGAGCTGATCATCCGCGTGCAA    342

BSNT_04914___    343 AAGCTGCTGCAGCTCGTATATAAGGAAGCTCCTCCTGTCCA-AAAAAATG    391
                     ||||||||..||||..|.|||||.||||..||.||||...| ||||||.|
BL00750___css    343 AAGCTGCTCAAGCTGATTTATAAAGAAGAACCGCCTGAGAAGAAAAAAGG    392

BSNT_04914___    392 AAATTGCC-GTCTCCTCGTATCGGGTCGCTGAAGACGCCCGCGAGGTCTA    440
                     ||  .||| ||.||||..|||...|||..|||||||....|.||.|||||
BL00750___css    393 AA--CGCCGGTTTCCTGCTATGAAGTCTATGAAGACTTGAGAGAAGTCTA    440

BSNT_04914___    441 TGACGAAAACGGGAATATTATCAATTTGACGTCAAAGGAATTTGATCTGC    490
                     |   |||||.||.|..||.|||||||||||||||||||||||||||||.|
BL00750___css    441 T---GAAAATGGCAGCATGATCAATTTGACGTCAAAGGAATTTGATCTTC    487

BSNT_04914___    491 TGCTATTATTTATCCATCATAAAGGGCATC-CGTACTCTCGTGAGGATAT    539
                     ||||..||||||| .|.||...|||||..| |.|..||..|.||||||||
BL00750___css    488 TGCTTCTATTTAT-AAACAACCAGGGCCGCGCCTTTTCAAGGGAGGATAT    536

BSNT_04914___    540 CCTCCTAAAAGTGTGGGGGCATGACTACTTCGGAACAGACCGGGTCGTTG    589
                     .|||...|..||.|||||....||.|||||||||||.|||||.|||||.|
BL00750___css    537 TCTCACCAGCGTCTGGGGAGTCGATTACTTCGGAACCGACCGCGTCGTCG    586

BSNT_04914___    590 ATGATCTCGTCCGGAGACTGCGC-AGAAAGATGCCTGAATTGAAGGTGGA    638
                     |.|||||.|||.|.||.|||||| ||||| |||||.|||.||||.|||||
BL00750___css    587 ACGATCTTGTCAGAAGGCTGCGCAAGAAA-ATGCCCGAACTGAAAGTGGA    635

BSNT_04914___    639 GACGATTTACGGTTTCGGCTACAGGTTGATGTCATCATGA    678
                     .||.||.|||||.||.|||||||||.||.||..|||||||
BL00750___css    636 AACCATCTACGGGTTTGGCTACAGGATGTTGAAATCATGA    675


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