Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04914 and BL00750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:05
# Commandline: needle
# -asequence dna-align/BSNT_04914___cssR.1.5803.seq
# -bsequence dna-align/BL00750___cssR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04914___cssR-BL00750___cssR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04914___cssR-BL00750___cssR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04914___cssR
# 2: BL00750___cssR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 524/690 (75.9%)
# Similarity: 524/690 (75.9%)
# Gaps: 27/690 ( 3.9%)
# Score: 1898.5
#
#
#=======================================
BSNT_04914___ 1 TTGTCATACACCATTTATCTAGTTGAAGATGAGGATAACCTGAATGAACT 50
|||||||||.||||||||||||||||||||||.||.||..|.||||||.|
BL00750___css 1 TTGTCATACTCCATTTATCTAGTTGAAGATGAAGAGAATTTAAATGAATT 50
BSNT_04914___ 51 GCTGACGAAGTATTTAGAGAATGAGGGCTGGAACATTACATCTTTTACGA 100
||||||.||.||.|||||||.|||.||||||.||.|.||.|||||| |.|
BL00750___css 51 GCTGACAAAATACTTAGAGAGTGAAGGCTGGCACGTCACTTCTTTT-CTA 99
BSNT_04914___ 101 AA-GGTGAAGACGCCAG--AAAGAAAATGACACCGTCTCCCCACCTATGG 147
|| ||||||..|||||| |||.||.|.|.|| |||.||.||..|||||
BL00750___css 100 AACGGTGAAAGCGCCAGGCAAAAAATAGGCCA--GTCACCTCATTTATGG 147
BSNT_04914___ 148 ATTCTTGATATCATGCTGCCGGATACCGACGGCTATACATTAATAAAAGA 197
|||||.|||||||||.|.||.||||.||||||.|||||..||||||||||
BL00750___css 148 ATTCTCGATATCATGTTACCAGATATCGACGGGTATACGCTAATAAAAGA 197
BSNT_04914___ 198 AATCAAGGCGA----AAGATCCTGACGTGCCGGTCATTTTTATTTCCGCC 243
|||.|| | |||||||.||.||.||.||||||||||||||.||.
BL00750___css 198 AATAAA----AAATCAAGATCCGGAAGTCCCCGTCATTTTTATTTCTGCG 243
BSNT_04914___ 244 CGAGATGCGGATATTGACAGAGTGCT-TGGCTTAGAGCTTGGCAGCAATG 292
||.|||||.||.|||||||||||||| .||||| ||.||.|||||||..|
BL00750___css 244 CGCGATGCCGACATTGACAGAGTGCTGGGGCTT-GAACTGGGCAGCAGCG 292
BSNT_04914___ 293 ACTACATTTCAAAGCCGTTTCTGCCGCGGGAGCTGATTATCCGTGTGCAA 342
||||.||.||.|||||||||||.||..||||||||||.|||||.||||||
BL00750___css 293 ACTATATATCTAAGCCGTTTCTCCCCAGGGAGCTGATCATCCGCGTGCAA 342
BSNT_04914___ 343 AAGCTGCTGCAGCTCGTATATAAGGAAGCTCCTCCTGTCCA-AAAAAATG 391
||||||||..||||..|.|||||.||||..||.||||...| ||||||.|
BL00750___css 343 AAGCTGCTCAAGCTGATTTATAAAGAAGAACCGCCTGAGAAGAAAAAAGG 392
BSNT_04914___ 392 AAATTGCC-GTCTCCTCGTATCGGGTCGCTGAAGACGCCCGCGAGGTCTA 440
|| .||| ||.||||..|||...|||..|||||||....|.||.|||||
BL00750___css 393 AA--CGCCGGTTTCCTGCTATGAAGTCTATGAAGACTTGAGAGAAGTCTA 440
BSNT_04914___ 441 TGACGAAAACGGGAATATTATCAATTTGACGTCAAAGGAATTTGATCTGC 490
| |||||.||.|..||.|||||||||||||||||||||||||||||.|
BL00750___css 441 T---GAAAATGGCAGCATGATCAATTTGACGTCAAAGGAATTTGATCTTC 487
BSNT_04914___ 491 TGCTATTATTTATCCATCATAAAGGGCATC-CGTACTCTCGTGAGGATAT 539
||||..||||||| .|.||...|||||..| |.|..||..|.||||||||
BL00750___css 488 TGCTTCTATTTAT-AAACAACCAGGGCCGCGCCTTTTCAAGGGAGGATAT 536
BSNT_04914___ 540 CCTCCTAAAAGTGTGGGGGCATGACTACTTCGGAACAGACCGGGTCGTTG 589
.|||...|..||.|||||....||.|||||||||||.|||||.|||||.|
BL00750___css 537 TCTCACCAGCGTCTGGGGAGTCGATTACTTCGGAACCGACCGCGTCGTCG 586
BSNT_04914___ 590 ATGATCTCGTCCGGAGACTGCGC-AGAAAGATGCCTGAATTGAAGGTGGA 638
|.|||||.|||.|.||.|||||| ||||| |||||.|||.||||.|||||
BL00750___css 587 ACGATCTTGTCAGAAGGCTGCGCAAGAAA-ATGCCCGAACTGAAAGTGGA 635
BSNT_04914___ 639 GACGATTTACGGTTTCGGCTACAGGTTGATGTCATCATGA 678
.||.||.|||||.||.|||||||||.||.||..|||||||
BL00750___css 636 AACCATCTACGGGTTTGGCTACAGGATGTTGAAATCATGA 675
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