Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04915 and BL00749
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:06
# Commandline: needle
# -asequence dna-align/BSNT_04915___cssS.1.5803.seq
# -bsequence dna-align/BL00749___cssS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04915___cssS-BL00749___cssS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04915___cssS-BL00749___cssS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04915___cssS
# 2: BL00749___cssS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1423
# Identity: 1009/1423 (70.9%)
# Similarity: 1009/1423 (70.9%)
# Gaps: 143/1423 (10.0%)
# Score: 3395.5
#
#
#=======================================
BSNT_04915___ 1 ATGAAAAACAAGCCGCTCGCGTTTCAGATATGGGTTGTCATATCCGGCAT 50
|||||.||||.|.|||||||.|||||.||.|||..||||||.|.||||||
BL00749___css 1 ATGAAGAACAGGTCGCTCGCCTTTCAAATTTGGAGTGTCATTTGCGGCAT 50
BSNT_04915___ 51 CCTGTTAGCGATATCGATTTTACTG-CTTGTGT-TATTTTCAAACACGCT 98
|||||||.||.|.||||||||.||| | ||.| ||||.||.|..||.||
BL00749___css 51 CCTGTTAACGGTCTCGATTTTGCTGAC--GTTTCTATTCTCGACGACACT 98
BSNT_04915___ 99 GCGAG-ATTTTTTCACTAATGAAACGTATACGACGATTGAAAATGAGCAG 147
|| || |.|||||||||.||||||..|||||.|..|||||||||||||||
BL00749___css 99 GC-AGAACTTTTTCACTGATGAAATTTATACAAACATTGAAAATGAGCAG 147
BSNT_04915___ 148 CATGTTCTGACAGAGTACCGCCTGCCAGG----TTCGATT-----GAAAG 188
|||||||||||.||.||| || |.||||| |||||
BL00749___css 148 CATGTTCTGACGGAATAC---------GGATTTTCCGATTCACCGGAAAG 188
BSNT_04915___ 189 GCGCTATTACAGCGAGGAAGCGACGGCGC-CG----ACAACTGTCCGCTC 233
..|| |.|.|| ||||||..||||.| || |||| .||||..
BL00749___css 189 AGGC---TTCGGC--GGAAGCAGCGGCTCGCGAAGCACAA---ACCGCCA 230
BSNT_04915___ 234 CGTACAGCACGTGCTCCTTCCTGA-AAATGAAGAGGCTTCT-TCAGACAA 281
|||.||||||||.||.||.||||| |||.||| .|.||| ||||
BL00749___css 231 CGTTCAGCACGTCCTGCTGCCTGAGAAAGGAA---CCGTCTATCAG---- 273
BSNT_04915___ 282 GGATTTAAGC------ATTCTGTCATCTTCATTTATCCACAAGGTGTACA 325
||| |||||..|...||||||||||.|.||||||.|.|
BL00749___css 274 -------AGCCCGCAGATTCTCCCCGATTCATTTATCGAGAAGGTGCAGA 316
BSNT_04915___ 326 AGCT-GGCTGATCA-GCAGGA------AGCTAAAAAGAAACGTTACAGCG 367
|||| || ||..| |||||| |.|.||||.|.| || ||
BL00749___css 317 AGCTCGG--GAAAAGGCAGGACGAGTCATCGAAAAGGTA---TT----CG 357
BSNT_04915___ 368 CCG-ACGTCAATGGAGAGAAAGTGTTTTTTGTCATTAAAAAGGGACTTTC 416
..| |.|||||.||||||.|.||.||.|||||..|.|||||
BL00749___css 358 GAGAATGTCAACGGAGAGCACGTTTTCTTTGTGCTCAAAAA--------- 398
BSNT_04915___ 417 CGTCAAT---------GGACAATCAG-CG---ATGATGCTCTCTTACGCG 453
||| |||| ||| || .||.||.|.||.||.|||
BL00749___css 399 ----AATCCAGACCCAGGAC---CAGACGTTTCTGTTGTTATCCTATGCG 441
BSNT_04915___ 454 CTTGATTCTTATCGGGACGATTTGGCCTATACCTTATTCAAACAGCTTCT 503
||||||||.||..|||||||||||.|..||||..|.||.||.|||||.||
BL00749___css 442 CTTGATTCATACAGGGACGATTTGTCTCATACGCTGTTTAAGCAGCTGCT 491
BSNT_04915___ 504 GTTTATTATAGCT-GTCGTCATTTTATTAAGCTGGATTCCGGCTATTTGG 552
||||||| |.|.| |||||||||||..|.|||||||||||..||||||||
BL00749___css 492 GTTTATT-TTGATCGTCGTCATTTTGCTGAGCTGGATTCCTTCTATTTGG 540
BSNT_04915___ 553 CTTGCAAAGTATTTATCAAGGCCTCTTGTATCATTTGAAAAACACGTCAA 602
||.||.||.|||||||||||.||.||.||..|..|||||||.||||||||
BL00749___css 541 CTGGCGAAATATTTATCAAGACCGCTCGTCACGCTTGAAAAGCACGTCAA 590
BSNT_04915___ 603 ACGGATTTCTGAACAGGATTGGGATGACCCAGTAAAAGTGGACCGGAAAG 652
||..||.|||.||||||||||||||||.||.||.|..||.|||.||.|||
BL00749___css 591 ACAAATCTCTAAACAGGATTGGGATGATCCCGTGATTGTCGACAGGGAAG 640
BSNT_04915___ 653 ATGAAATCGGAAAATTGGGCCATACCATCGAAGAGATGCGCCAAAAGCTT 702
|.||||||||.||..||||.||.|||||.|||||.|||||.||||||||.
BL00749___css 641 ACGAAATCGGCAAGCTGGGGCACACCATTGAAGACATGCGGCAAAAGCTC 690
BSNT_04915___ 703 GTGCAAAAGGATGAAACAGAAAGAACTCTATTGCAAAATATCTCTCATGA 752
.|.||.||.|||||.||||||.|.||.||..|||||||.|||||.||.||
BL00749___css 691 ATCCAGAAAGATGAGACAGAACGCACGCTCCTGCAAAACATCTCCCACGA 740
BSNT_04915___ 753 TTTAAAAACGCCGGTCATGGTCATCAGAGGCTATACACAATCAATTAAAG 802
..|.|||||||||||||||||||||.|.||.|||||.||.||.||.||||
BL00749___css 741 CCTGAAAACGCCGGTCATGGTCATCCGCGGGTATACCCAGTCGATCAAAG 790
BSNT_04915___ 803 ACGGGATTTTTCCTAAAGGAGACCTTGAAAACACTGTAGATGTTATTGAA 852
||||.||.|..|||||||||||..|.||||||||..|.||.||.||||||
BL00749___css 791 ACGGCATCTACCCTAAAGGAGATTTGGAAAACACGATTGAAGTCATTGAA 840
BSNT_04915___ 853 TGCGAAGCTCTTAAGCTGGAGAAAAAAATAAAGGAT-TTATTATATTTAA 901
.||||||||...||.||.||.||.|||||.|||||| ||.|| |||.|.|
BL00749___css 841 GGCGAAGCTGAAAAACTTGAAAAGAAAATCAAGGATCTTCTT-TATCTGA 889
BSNT_04915___ 902 CGAAGCTGGATTATTTAGC-GAAGCAA-AAAGTGCAGCACG--ACATGTT 947
|.|||||.|||||||| || ||..||| |||| .|||.||| || |.||
BL00749___css 890 CAAAGCTTGATTATTT-GCTGAGACAAGAAAG-ACAGTACGGAAC-TTTT 936
BSNT_04915___ 948 CAGTATTGTAGAAGTGACAGAAGAAGTCATCGAACGATTGAAGTGGGCGC 997
.| |||...|||.||.|...|||||||..|.|||||.||||..|||.|..
BL00749___css 937 GA-TATACAAGAGGTCATTAAAGAAGTTGTTGAACGCTTGAGATGGTCCA 985
BSNT_04915___ 998 GGAAAGAACT-ATCGTGGGAAATTGATGTAGAAGAGGATATTTTGATGCC 1046
..||||||.| |.| |||.|.||||||.|.||||||||.|...||.||.|
BL00749___css 986 AAAAAGAATTGAAC-TGGAAGATTGATCTTGAAGAGGAAACAATGTTGAC 1034
BSNT_04915___ 1047 GGGCGATCCGGAGCAATGGAACAAACTCCTCGAAAACATTCTGGAAAATC 1096
||||||||..||.|||||||.|||.||..|.||||||.||||.|||||.|
BL00749___css 1035 GGGCGATCAAGAACAATGGAGCAAGCTGTTGGAAAACGTTCTTGAAAACC 1084
BSNT_04915___ 1097 AAATCCGCTATGCTGAGACAAAAATAGAAATCAGCATGAAACAAGATGAT 1146
|.|||||||||||.||||||...||.||.||||||.| ||.|..||
BL00749___css 1085 AGATCCGCTATGCGGAGACATTCATTGACATCAGCGT----CAGGTCGA- 1129
BSNT_04915___ 1147 CGAA-----ATATCG-TGATCACCATTAAAAATGACGGTCCGCATATTGA 1190
|||| ||| || ||||||||||||||||||||||.|||||.|||||
BL00749___css 1130 CGAAAGAACATA-CGTTGATCACCATTAAAAATGACGGACCGCACATTGA 1178
BSNT_04915___ 1191 AGATGAGATGCTCTCCAGCCTCTATGAGCCTTTTAATAAAGGGAAGAAAG 1240
|||.||||||||.||||||||.||||||||||||||||||||||||||||
BL00749___css 1179 AGAAGAGATGCTTTCCAGCCTGTATGAGCCTTTTAATAAAGGGAAGAAAG 1228
BSNT_04915___ 1241 GCGAATTCGGCATTGGTCTAAGCATCGTAAAACGAATTTTAACTCTTCAT 1290
||||||||||||||||.||.||||||||.||||||||.|||||.||.||
BL00749___css 1229 GCGAATTCGGCATTGGACTCAGCATCGTTAAACGAATCTTAACGCTCCA- 1277
BSNT_04915___ 1291 AAGGCAT-CT---ATCTCAATTGAAAATGACAAAACGGGTGTAACATACC 1336
.||| || ||..|.|||...|||||..||||.|||||....|||.
BL00749___css 1278 ---CCATGCTGACATGACCATTCGGAATGATCAAACCGGTGTGTGCTACT 1324
BSNT_04915___ 1337 GCATAGCAGTGCC---AAAATAG 1356
..|||.|.||.|| |||.|||
BL00749___css 1325 CAATATCCGTTCCGAGAAATTAG 1347
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